A citation-based method for searching scientific literature

Luisa Statello, Chun-Jie Guo, Ling-Ling Chen, Maite Huarte. Nat Rev Mol Cell Biol 2021
Times Cited: 113







List of co-cited articles
771 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Gregory Guernec, David Martin, Angelika Merkel, David G Knowles,[...]. Genome Res 2012
15

Long non-coding RNAs: insights into functions.
Tim R Mercer, Marcel E Dinger, John S Mattick. Nat Rev Genet 2009
11

Long Non-Coding RNAs in the Regulation of Gene Expression: Physiology and Disease.
Juliane C R Fernandes, Stephanie M Acuña, Juliana I Aoki, Lucile M Floeter-Winter, Sandra M Muxel. Noncoding RNA 2019
203
11

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.
Moran N Cabili, Cole Trapnell, Loyal Goff, Magdalena Koziol, Barbara Tazon-Vega, Aviv Regev, John L Rinn. Genes Dev 2011
10

Cellular functions of long noncoding RNAs.
Run-Wen Yao, Yang Wang, Ling-Ling Chen. Nat Cell Biol 2019
373
10

The landscape of long noncoding RNAs in the human transcriptome.
Matthew K Iyer, Yashar S Niknafs, Rohit Malik, Udit Singhal, Anirban Sahu, Yasuyuki Hosono, Terrence R Barrette, John R Prensner, Joseph R Evans, Shuang Zhao,[...]. Nat Genet 2015
9

On the classification of long non-coding RNAs.
Lina Ma, Vladimir B Bajic, Zhang Zhang. RNA Biol 2013
543
9

Mechanisms and Functions of Long Non-Coding RNAs at Multiple Regulatory Levels.
Xiaopei Zhang, Wei Wang, Weidong Zhu, Jie Dong, Yingying Cheng, Zujun Yin, Fafu Shen. Int J Mol Sci 2019
101
9

Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
Freddie Bray, Jacques Ferlay, Isabelle Soerjomataram, Rebecca L Siegel, Lindsey A Torre, Ahmedin Jemal. CA Cancer J Clin 2018
9

A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?
Leonardo Salmena, Laura Poliseno, Yvonne Tay, Lev Kats, Pier Paolo Pandolfi. Cell 2011
9

Towards a complete map of the human long non-coding RNA transcriptome.
Barbara Uszczynska-Ratajczak, Julien Lagarde, Adam Frankish, Roderic Guigó, Rory Johnson. Nat Rev Genet 2018
180
8

Noncoding RNA NORAD Regulates Genomic Stability by Sequestering PUMILIO Proteins.
Sungyul Lee, Florian Kopp, Tsung-Cheng Chang, Anupama Sataluri, Beibei Chen, Sushama Sivakumar, Hongtao Yu, Yang Xie, Joshua T Mendell. Cell 2016
375
8

Landscape of transcription in human cells.
Sarah Djebali, Carrie A Davis, Angelika Merkel, Alex Dobin, Timo Lassmann, Ali Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger,[...]. Nature 2012
8

Unique features of long non-coding RNA biogenesis and function.
Jeffrey J Quinn, Howard Y Chang. Nat Rev Genet 2016
8

Long Noncoding RNAs in Cancer Pathways.
Adam M Schmitt, Howard Y Chang. Cancer Cell 2016
8

Molecular mechanisms of long noncoding RNAs.
Kevin C Wang, Howard Y Chang. Mol Cell 2011
8

Linking Long Noncoding RNA Localization and Function.
Ling-Ling Chen. Trends Biochem Sci 2016
412
8

An atlas of human long non-coding RNAs with accurate 5' ends.
Chung-Chau Hon, Jordan A Ramilowski, Jayson Harshbarger, Nicolas Bertin, Owen J L Rackham, Julian Gough, Elena Denisenko, Sebastian Schmeier, Thomas M Poulsen, Jessica Severin,[...]. Nature 2017
444
7

Genome regulation by long noncoding RNAs.
John L Rinn, Howard Y Chang. Annu Rev Biochem 2012
7

The functions and unique features of long intergenic non-coding RNA.
Julia D Ransohoff, Yuning Wei, Paul A Khavari. Nat Rev Mol Cell Biol 2018
372
7

The transcriptional landscape of the mammalian genome.
P Carninci, T Kasukawa, S Katayama, J Gough, M C Frith, N Maeda, R Oyama, T Ravasi, B Lenhard, C Wells,[...]. Science 2005
6

The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites.
Jason A West, Christopher P Davis, Hongjae Sunwoo, Matthew D Simon, Ruslan I Sadreyev, Peggy I Wang, Michael Y Tolstorukov, Robert E Kingston. Mol Cell 2014
345
6

Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution.
Moran N Cabili, Margaret C Dunagin, Patrick D McClanahan, Andrew Biaesch, Olivia Padovan-Merhar, Aviv Regev, John L Rinn, Arjun Raj. Genome Biol 2015
317
6

Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor.
Tomoshige Kino, Darrell E Hurt, Takamasa Ichijo, Nancy Nader, George P Chrousos. Sci Signal 2010
818
6

Evolutionary conservation of long non-coding RNAs; sequence, structure, function.
Per Johnsson, Leonard Lipovich, Dan Grandér, Kevin V Morris. Biochim Biophys Acta 2014
365
6

Non-coding RNA: what is functional and what is junk?
Alexander F Palazzo, Eliza S Lee. Front Genet 2015
283
6

Long noncoding RNA as modular scaffold of histone modification complexes.
Miao-Chih Tsai, Ohad Manor, Yue Wan, Nima Mosammaparast, Jordon K Wang, Fei Lan, Yang Shi, Eran Segal, Howard Y Chang. Science 2010
6


Transcriptional and Post-transcriptional Gene Regulation by Long Non-coding RNA.
Iain M Dykes, Costanza Emanueli. Genomics Proteomics Bioinformatics 2017
293
6

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
6

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals.
Mitchell Guttman, Ido Amit, Manuel Garber, Courtney French, Michael F Lin, David Feldser, Maite Huarte, Or Zuk, Bryce W Carey, John P Cassady,[...]. Nature 2009
6


The biogenesis, biology and characterization of circular RNAs.
Lasse S Kristensen, Maria S Andersen, Lotte V W Stagsted, Karoline K Ebbesen, Thomas B Hansen, Jørgen Kjems. Nat Rev Genet 2019
688
5

Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters.
Tiffany Hung, Yulei Wang, Michael F Lin, Ashley K Koegel, Yojiro Kotake, Gavin D Grant, Hugo M Horlings, Nilay Shah, Christopher Umbricht, Pei Wang,[...]. Nat Genet 2011
784
5


An evolutionarily conserved long noncoding RNA TUNA controls pluripotency and neural lineage commitment.
Nianwei Lin, Kung-Yen Chang, Zhonghan Li, Keith Gates, Zacharia A Rana, Jason Dang, Danhua Zhang, Tianxu Han, Chao-Shun Yang, Thomas J Cunningham,[...]. Mol Cell 2014
249
5

Long noncoding RNAs: past, present, and future.
Johnny T Y Kung, David Colognori, Jeannie T Lee. Genetics 2013
5

The multidimensional mechanisms of long noncoding RNA function.
Francesco P Marchese, Ivan Raimondi, Maite Huarte. Genome Biol 2017
426
5

Decrypting noncoding RNA interactions, structures, and functional networks.
Muller Fabbri, Leonard Girnita, Gabriele Varani, George A Calin. Genome Res 2019
40
12

The long noncoding RNA Malat1: Its physiological and pathophysiological functions.
Xuejing Zhang, Milton H Hamblin, Ke-Jie Yin. RNA Biol 2017
167
5

The H19 locus: role of an imprinted non-coding RNA in growth and development.
Anne Gabory, Hélène Jammes, Luisa Dandolo. Bioessays 2010
412
5

Crosstalk Between Long Non-coding RNAs, Micro-RNAs and mRNAs: Deciphering Molecular Mechanisms of Master Regulators in Cancer.
Eduardo López-Urrutia, Lilia P Bustamante Montes, Diego Ladrón de Guevara Cervantes, Carlos Pérez-Plasencia, Alma D Campos-Parra. Front Oncol 2019
52
9

The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation.
Vidisha Tripathi, Jonathan D Ellis, Zhen Shen, David Y Song, Qun Pan, Andrew T Watt, Susan M Freier, C Frank Bennett, Alok Sharma, Paula A Bubulya,[...]. Mol Cell 2010
5

Circular RNAs are a large class of animal RNAs with regulatory potency.
Sebastian Memczak, Marvin Jens, Antigoni Elefsinioti, Francesca Torti, Janna Krueger, Agnieszka Rybak, Luisa Maier, Sebastian D Mackowiak, Lea H Gregersen, Mathias Munschauer,[...]. Nature 2013
5

Evolution and functions of long noncoding RNAs.
Chris P Ponting, Peter L Oliver, Wolf Reik. Cell 2009
5

A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains.
John N Hutchinson, Alexander W Ensminger, Christine M Clemson, Christopher R Lynch, Jeanne B Lawrence, Andrew Chess. BMC Genomics 2007
606
5

Overview of MicroRNA Biogenesis, Mechanisms of Actions, and Circulation.
Jacob O'Brien, Heyam Hayder, Yara Zayed, Chun Peng. Front Endocrinol (Lausanne) 2018
752
5

Endogenous microRNA sponges: evidence and controversy.
Daniel W Thomson, Marcel E Dinger. Nat Rev Genet 2016
824
5

Long non-coding RNA: Classification, biogenesis and functions in blood cells.
Swati Dahariya, Indira Paddibhatla, Santosh Kumar, Sanjeev Raghuwanshi, Adithya Pallepati, Ravi Kumar Gutti. Mol Immunol 2019
84
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.