A citation-based method for searching scientific literature

Panagiotis Kotsantis, Sandra Segura-Bayona, Pol Margalef, Paulina Marzec, Phil Ruis, Graeme Hewitt, Roberto Bellelli, Harshil Patel, Robert Goldstone, Anna R Poetsch, Simon J Boulton. Cell Rep 2020
Times Cited: 3







List of co-cited articles
21 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


DNA damage and genome instability by G-quadruplex ligands are mediated by R loops in human cancer cells.
Alessio De Magis, Stefano G Manzo, Marco Russo, Jessica Marinello, Rita Morigi, Olivier Sordet, Giovanni Capranico. Proc Natl Acad Sci U S A 2019
73
66

CNBP controls transcription by unfolding DNA G-quadruplex structures.
Aldana P David, Angélique Pipier, Federico Pascutti, Andrés Binolfi, Andrea M J Weiner, Emilse Challier, Sofía Heckel, Patrick Calsou, Dennis Gomez, Nora B Calcaterra,[...]. Nucleic Acids Res 2019
11
66

DNA G-quadruplexes in the human genome: detection, functions and therapeutic potential.
Robert Hänsel-Hertsch, Marco Di Antonio, Shankar Balasubramanian. Nat Rev Mol Cell Biol 2017
348
66

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
162
66

R loops: from transcription byproducts to threats to genome stability.
Andrés Aguilera, Tatiana García-Muse. Mol Cell 2012
555
66

G-quadruplex-R-loop interactions and the mechanism of anticancer G-quadruplex binders.
Giulia Miglietta, Marco Russo, Giovanni Capranico. Nucleic Acids Res 2020
11
66

Existence and consequences of G-quadruplex structures in DNA.
Pierre Murat, Shankar Balasubramanian. Curr Opin Genet Dev 2014
225
66

Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
66


A novel small molecule that alters shelterin integrity and triggers a DNA-damage response at telomeres.
Raphaël Rodriguez, Sebastian Müller, Justin A Yeoman, Chantal Trentesaux, Jean-François Riou, Shankar Balasubramanian. J Am Chem Soc 2008
233
66

G4-associated human diseases.
Nancy Maizels. EMBO Rep 2015
168
66


The regulation and functions of DNA and RNA G-quadruplexes.
Dhaval Varshney, Jochen Spiegel, Katherine Zyner, David Tannahill, Shankar Balasubramanian. Nat Rev Mol Cell Biol 2020
124
66

Genome-wide mapping of endogenous G-quadruplex DNA structures by chromatin immunoprecipitation and high-throughput sequencing.
Robert Hänsel-Hertsch, Jochen Spiegel, Giovanni Marsico, David Tannahill, Shankar Balasubramanian. Nat Protoc 2018
72
66

Quadruplex DNA: sequence, topology and structure.
Sarah Burge, Gary N Parkinson, Pascale Hazel, Alan K Todd, Stephen Neidle. Nucleic Acids Res 2006
66


Small-molecule-induced DNA damage identifies alternative DNA structures in human genes.
Raphaël Rodriguez, Kyle M Miller, Josep V Forment, Charles R Bradshaw, Mehran Nikan, Sébastien Britton, Tobias Oelschlaegel, Blerta Xhemalce, Shankar Balasubramanian, Stephen P Jackson. Nat Chem Biol 2012
386
66

G4 motifs correlate with promoter-proximal transcriptional pausing in human genes.
Johanna Eddy, Aarthy C Vallur, Sudir Varma, Hongfang Liu, William C Reinhold, Yves Pommier, Nancy Maizels. Nucleic Acids Res 2011
68
66

High-throughput sequencing of DNA G-quadruplex structures in the human genome.
Vicki S Chambers, Giovanni Marsico, Jonathan M Boutell, Marco Di Antonio, Geoffrey P Smith, Shankar Balasubramanian. Nat Biotechnol 2015
498
66

R-ChIP Using Inactive RNase H Reveals Dynamic Coupling of R-loops with Transcriptional Pausing at Gene Promoters.
Liang Chen, Jia-Yu Chen, Xuan Zhang, Ying Gu, Rui Xiao, Changwei Shao, Peng Tang, Hao Qian, Daji Luo, Hairi Li,[...]. Mol Cell 2017
104
66

Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity.
Jae Jin Kim, Seo Yun Lee, Fade Gong, Anna M Battenhouse, Daniel R Boutz, Aarti Bashyal, Samantha T Refvik, Cheng-Ming Chiang, Blerta Xhemalce, Tanya T Paull,[...]. Genes Dev 2019
24
66



Loss of Topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis.
Aziz El Hage, Sarah L French, Ann L Beyer, David Tollervey. Genes Dev 2010
269
33

A complex suite of loci and elements in eukaryotic type II topoisomerases determine selective sensitivity to distinct poisoning agents.
Tim R Blower, Afif Bandak, Amy S Y Lee, Caroline A Austin, John L Nitiss, James M Berger. Nucleic Acids Res 2019
3
33

The primary mechanism of cytotoxicity of the chemotherapeutic agent CX-5461 is topoisomerase II poisoning.
Peter M Bruno, Mengrou Lu, Kady A Dennis, Haider Inam, Connor J Moore, John Sheehe, Stephen J Elledge, Michael T Hemann, Justin R Pritchard. Proc Natl Acad Sci U S A 2020
28
33

BRD4 prevents the accumulation of R-loops and protects against transcription-replication collision events and DNA damage.
Fred C Lam, Yi Wen Kong, Qiuying Huang, Tu-Lan Vu Han, Amanda D Maffa, Ekkehard M Kasper, Michael B Yaffe. Nat Commun 2020
14
33


NG6: Integrated next generation sequencing storage and processing environment.
Jérôme Mariette, Frédéric Escudié, Nicolas Allias, Gérald Salin, Céline Noirot, Sylvain Thomas, Christophe Klopp. BMC Genomics 2012
41
33


A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.
Pablo Cingolani, Adrian Platts, Le Lily Wang, Melissa Coon, Tung Nguyen, Luan Wang, Susan J Land, Xiangyi Lu, Douglas M Ruden. Fly (Austin) 2012
33

Site-Specific Cleavage by Topoisomerase 2: A Mark of the Core Centromere.
Walter E Mills, Jennifer M Spence, Tatsuo Fukagawa, Christine J Farr. Int J Mol Sci 2018
5
33

DrugTargetSeqR: a genomics- and CRISPR-Cas9-based method to analyze drug targets.
Corynn Kasap, Olivier Elemento, Tarun M Kapoor. Nat Chem Biol 2014
65
33

Cellular processing pathways contribute to the activation of etoposide-induced DNA damage responses.
Jia-Rong Fan, An-Lin Peng, Hsiang-Chin Chen, Shu-Chi Lo, Ting-Hsiang Huang, Tsai-Kun Li. DNA Repair (Amst) 2008
38
33


Genome-wide genetic screening with chemically mutagenized haploid embryonic stem cells.
Josep V Forment, Mareike Herzog, Julia Coates, Tomasz Konopka, Bianca V Gapp, Sebastian M Nijman, David J Adams, Thomas M Keane, Stephen P Jackson. Nat Chem Biol 2017
25
33

Transcription-mediated replication hindrance: a major driver of genome instability.
Belén Gómez-González, Andrés Aguilera. Genes Dev 2019
61
33

RECQ5-dependent SUMOylation of DNA topoisomerase I prevents transcription-associated genome instability.
Min Li, Subhash Pokharel, Jiin-Tarng Wang, Xiaohua Xu, Yilun Liu. Nat Commun 2015
33
33

The effects of DNA supercoiling on G-quadruplex formation.
Doreen A T Sekibo, Keith R Fox. Nucleic Acids Res 2017
24
33

First-in-Human RNA Polymerase I Transcription Inhibitor CX-5461 in Patients with Advanced Hematologic Cancers: Results of a Phase I Dose-Escalation Study.
Amit Khot, Natalie Brajanovski, Donald P Cameron, Nadine Hein, Kylee H Maclachlan, Elaine Sanij, John Lim, John Soong, Emma Link, Piers Blombery,[...]. Cancer Discov 2019
40
33

Apoptosis related to telomere instability and cell cycle alterations in human glioma cells treated by new highly selective G-quadruplex ligands.
Gaëlle Pennarun, Christine Granotier, Laurent R Gauthier, Dennis Gomez, Françoise Hoffschir, Eliane Mandine, Jean-François Riou, Jean-Louis Mergny, Patrick Mailliet, François D Boussin. Oncogene 2005
182
33

DNA topoisomerases and their poisoning by anticancer and antibacterial drugs.
Yves Pommier, Elisabetta Leo, HongLiang Zhang, Christophe Marchand. Chem Biol 2010
976
33

Superhelicity Constrains a Localized and R-Loop-Dependent Formation of G-Quadruplexes at the Upstream Region of Transcription.
Ke-Wei Zheng, Yi-de He, Hong-He Liu, Xin-Min Li, Yu-Hua Hao, Zheng Tan. ACS Chem Biol 2017
21
33


Using transcriptome sequencing to identify mechanisms of drug action and resistance.
Sarah A Wacker, Benjamin R Houghtaling, Olivier Elemento, Tarun M Kapoor. Nat Chem Biol 2012
104
33

BLM helicase suppresses recombination at G-quadruplex motifs in transcribed genes.
Niek van Wietmarschen, Sarra Merzouk, Nancy Halsema, Diana C J Spierings, Victor Guryev, Peter M Lansdorp. Nat Commun 2018
36
33

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
33



G-quadruplex structures mark human regulatory chromatin.
Robert Hänsel-Hertsch, Dario Beraldi, Stefanie V Lensing, Giovanni Marsico, Katherine Zyner, Aled Parry, Marco Di Antonio, Jeremy Pike, Hiroshi Kimura, Masashi Narita,[...]. Nat Genet 2016
318
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.