A citation-based method for searching scientific literature

Phuc-Chau Do, Trung H Nguyen, Uyen H M Vo, Ly Le. PLoS One 2020
Times Cited: 3







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


An in vivo human-plasmablast enrichment technique allows rapid identification of therapeutic influenza A antibodies.
Gerald Nakamura, Ning Chai, Summer Park, Nancy Chiang, Zhonghua Lin, Henry Chiu, Rina Fong, Donghong Yan, Janice Kim, Juan Zhang,[...]. Cell Host Microbe 2013
128
33

Molecular basis of the structure and function of H1 hemagglutinin of influenza virus.
Nongluk Sriwilaijaroen, Yasuo Suzuki. Proc Jpn Acad Ser B Phys Biol Sci 2012
128
33

Matt: local flexibility aids protein multiple structure alignment.
Matthew Menke, Bonnie Berger, Lenore Cowen. PLoS Comput Biol 2008
133
33

A method for simultaneous alignment of multiple protein structures.
Maxim Shatsky, Ruth Nussinov, Haim J Wolfson. Proteins 2004
341
33

Array-Based Rational Design of Short Peptide Probe-Derived from an Anti-TNT Monoclonal Antibody.
Mina Okochi, Masaki Muto, Kentaro Yanai, Masayoshi Tanaka, Takeshi Onodera, Jin Wang, Hiroshi Ueda, Kiyoshi Toko. ACS Comb Sci 2017
16
33

The biology of influenza viruses.
Nicole M Bouvier, Peter Palese. Vaccine 2008
557
33

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
33

Multiple flexible structure alignment using partial order graphs.
Yuzhen Ye, Adam Godzik. Bioinformatics 2005
81
33

SABmark--a benchmark for sequence alignment that covers the entire known fold space.
Ivo Van Walle, Ignace Lasters, Lode Wyns. Bioinformatics 2005
141
33

Ultra-fast FFT protein docking on graphics processors.
David W Ritchie, Vishwesh Venkatraman. Bioinformatics 2010
209
33

VMD: visual molecular dynamics.
W Humphrey, A Dalke, K Schulten. J Mol Graph 1996
33

Heterosubtypic neutralizing monoclonal antibodies cross-protective against H5N1 and H1N1 recovered from human IgM+ memory B cells.
Mark Throsby, Edward van den Brink, Mandy Jongeneelen, Leo L M Poon, Philippe Alard, Lisette Cornelissen, Arjen Bakker, Freek Cox, Els van Deventer, Yi Guan,[...]. PLoS One 2008
570
33

In Silico Design of New Inhibitors Against Hemagglutinin of Influenza.
Aurélie Perrier, Matthias Eluard, Michel Petitjean, Anne Vanet. J Phys Chem B 2019
5
33

A neutralizing antibody selected from plasma cells that binds to group 1 and group 2 influenza A hemagglutinins.
Davide Corti, Jarrod Voss, Steven J Gamblin, Giosiana Codoni, Annalisa Macagno, David Jarrossay, Sebastien G Vachieri, Debora Pinna, Andrea Minola, Fabrizia Vanzetta,[...]. Science 2011
865
33

HOMSTRAD: a database of protein structure alignments for homologous families.
K Mizuguchi, C M Deane, T L Blundell, J P Overington. Protein Sci 1998
361
33

A potent broad-spectrum protective human monoclonal antibody crosslinking two haemagglutinin monomers of influenza A virus.
Ying Wu, MyungSam Cho, David Shore, Manki Song, JungAh Choi, Tao Jiang, Yong-Qiang Deng, Melissa Bourgeois, Lynn Almli, Hua Yang,[...]. Nat Commun 2015
106
33


Computational Design of Epitope-Specific Functional Antibodies.
Guy Nimrod, Sharon Fischman, Mark Austin, Asael Herman, Feenagh Keyes, Olga Leiderman, David Hargreaves, Marek Strajbl, Jason Breed, Shelley Klompus,[...]. Cell Rep 2018
33
33

The future of peptide-based drugs.
David J Craik, David P Fairlie, Spiros Liras, David Price. Chem Biol Drug Des 2013
33

SISYPHUS--structural alignments for proteins with non-trivial relationships.
Antonina Andreeva, Andreas Prlić, Tim J P Hubbard, Alexey G Murzin. Nucleic Acids Res 2007
54
33

Potent peptidic fusion inhibitors of influenza virus.
Rameshwar U Kadam, Jarek Juraszek, Boerries Brandenburg, Christophe Buyck, Wim B G Schepens, Bart Kesteleyn, Bart Stoops, Rob J Vreeken, Jan Vermond, Wouter Goutier,[...]. Science 2017
88
33




Structural and functional bases for broad-spectrum neutralization of avian and human influenza A viruses.
Jianhua Sui, William C Hwang, Sandra Perez, Ge Wei, Daniel Aird, Li-mei Chen, Eugenio Santelli, Boguslaw Stec, Greg Cadwell, Maryam Ali,[...]. Nat Struct Mol Biol 2009
923
33

Vaccine-Induced Antibodies that Neutralize Group 1 and Group 2 Influenza A Viruses.
M Gordon Joyce, Adam K Wheatley, Paul V Thomas, Gwo-Yu Chuang, Cinque Soto, Robert T Bailer, Aliaksandr Druz, Ivelin S Georgiev, Rebecca A Gillespie, Masaru Kanekiyo,[...]. Cell 2016
201
33

Structure and Function Analysis of an Antibody Recognizing All Influenza A Subtypes.
Nicole L Kallewaard, Davide Corti, Patrick J Collins, Ursula Neu, Josephine M McAuliffe, Ebony Benjamin, Leslie Wachter-Rosati, Frances J Palmer-Hill, Andy Q Yuan, Philip A Walker,[...]. Cell 2016
227
33

Antibody recognition of a highly conserved influenza virus epitope.
Damian C Ekiert, Gira Bhabha, Marc-André Elsliger, Robert H E Friesen, Mandy Jongeneelen, Mark Throsby, Jaap Goudsmit, Ian A Wilson. Science 2009
982
33

Computational prediction of protein hot spot residues.
John Kenneth Morrow, Shuxing Zhang. Curr Pharm Des 2012
59
33

High cleavage efficiency of a 2A peptide derived from porcine teschovirus-1 in human cell lines, zebrafish and mice.
Jin Hee Kim, Sang-Rok Lee, Li-Hua Li, Hye-Jeong Park, Jeong-Hoh Park, Kwang Youl Lee, Myeong-Kyu Kim, Boo Ahn Shin, Seok-Yong Choi. PLoS One 2011
778
33

MASS: multiple structural alignment by secondary structures.
O Dror, H Benyamini, R Nussinov, H Wolfson. Bioinformatics 2003
68
33




Antibody 27F3 Broadly Targets Influenza A Group 1 and 2 Hemagglutinins through a Further Variation in VH1-69 Antibody Orientation on the HA Stem.
Shanshan Lang, Jia Xie, Xueyong Zhu, Nicholas C Wu, Richard A Lerner, Ian A Wilson. Cell Rep 2017
65
33

Effect of silk fibroin peptide derived from silkworm Bombyx mori on the anti-inflammatory effect of Tat-SOD in a mice edema model.
Dae Won Kim, Hyun Sook Hwang, Duk-Soo Kim, Seung Hoon Sheen, Dong Hwa Heo, Gyojun Hwang, Suk Hyung Kang, HaeYong Kweon, You-Young Jo, Seok Woo Kang,[...]. BMB Rep 2011
25
33


Broadly cross-reactive antibodies dominate the human B cell response against 2009 pandemic H1N1 influenza virus infection.
Jens Wrammert, Dimitrios Koutsonanos, Gui-Mei Li, Srilatha Edupuganti, Jianhua Sui, Michael Morrissey, Megan McCausland, Ioanna Skountzou, Mady Hornig, W Ian Lipkin,[...]. J Exp Med 2011
629
33

Oseltamivir resistance during treatment of influenza A (H5N1) infection.
Menno D de Jong, Tan Thanh Tran, Huu Khanh Truong, Minh Hien Vo, Gavin J D Smith, Vinh Chau Nguyen, Van Cam Bach, Tu Qui Phan, Quang Ha Do, Yi Guan,[...]. N Engl J Med 2005
654
33


New insights into the spring-loaded conformational change of influenza virus hemagglutinin.
Jennifer A Gruenke, R Todd Armstrong, William W Newcomb, Jay C Brown, Judith M White. J Virol 2002
52
33


Stereochemistry of polypeptide chain configurations.
G N RAMACHANDRAN, C RAMAKRISHNAN, V SASISEKHARAN. J Mol Biol 1963
33

Cross-neutralization of influenza A viruses mediated by a single antibody loop.
Damian C Ekiert, Arun K Kashyap, John Steel, Adam Rubrum, Gira Bhabha, Reza Khayat, Jeong Hyun Lee, Michael A Dillon, Ryann E O'Neil, Aleksandr M Faynboym,[...]. Nature 2012
337
33

Alternative recognition of the conserved stem epitope in influenza A virus hemagglutinin by a VH3-30-encoded heterosubtypic antibody.
Arkadiusz Wyrzucki, Cyrille Dreyfus, Ines Kohler, Marco Steck, Ian A Wilson, Lars Hangartner. J Virol 2014
52
33

Protein-protein docking and hot-spot prediction for drug discovery.
Solene Grosdidier, Juan Fernández-Recio. Curr Pharm Des 2012
29
33

Computational design of proteins targeting the conserved stem region of influenza hemagglutinin.
Sarel J Fleishman, Timothy A Whitehead, Damian C Ekiert, Cyrille Dreyfus, Jacob E Corn, Eva-Maria Strauch, Ian A Wilson, David Baker. Science 2011
403
33

Recurring and Adaptable Binding Motifs in Broadly Neutralizing Antibodies to Influenza Virus Are Encoded on the D3-9 Segment of the Ig Gene.
Nicholas C Wu, Seiya Yamayoshi, Mutsumi Ito, Ryuta Uraki, Yoshihiro Kawaoka, Ian A Wilson. Cell Host Microbe 2018
25
33

3DFlu: database of sequence and structural variability of the influenza hemagglutinin at population scale.
Giovanni Mazzocco, Michal Lazniewski, Piotr Migdał, Teresa Szczepińska, Jan P Radomski, Dariusz Plewczynski. Database (Oxford) 2016
4
33

MUSTANG: a multiple structural alignment algorithm.
Arun S Konagurthu, James C Whisstock, Peter J Stuckey, Arthur M Lesk. Proteins 2006
499
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.