A citation-based method for searching scientific literature

Masahito Yamagata, Wenjun Yan, Joshua R Sanes. Elife 2021
Times Cited: 27







List of co-cited articles
271 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics.
Karthik Shekhar, Sylvain W Lapan, Irene E Whitney, Nicholas M Tran, Evan Z Macosko, Monika Kowalczyk, Xian Adiconis, Joshua Z Levin, James Nemesh, Melissa Goldman,[...]. Cell 2016
540
40

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina.
Yi-Rong Peng, Karthik Shekhar, Wenjun Yan, Dustin Herrmann, Anna Sappington, Gregory S Bryman, Tavé van Zyl, Michael Tri H Do, Aviv Regev, Joshua R Sanes. Cell 2019
167
40

Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes.
Nicholas M Tran, Karthik Shekhar, Irene E Whitney, Anne Jacobi, Inbal Benhar, Guosong Hong, Wenjun Yan, Xian Adiconis, McKinzie E Arnold, Jung Min Lee,[...]. Neuron 2019
164
29

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
29

Cell Atlas of The Human Fovea and Peripheral Retina.
Wenjun Yan, Yi-Rong Peng, Tavé van Zyl, Aviv Regev, Karthik Shekhar, Dejan Juric, Joshua R Sanes. Sci Rep 2020
60
29


The neuronal organization of the retina.
Richard H Masland. Neuron 2012
486
25

Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes.
Bruce A Rheaume, Amyeo Jereen, Mohan Bolisetty, Muhammad S Sajid, Yue Yang, Kathleen Renna, Lili Sun, Paul Robson, Ephraim F Trakhtenberg. Nat Commun 2018
180
25

Mouse Retinal Cell Atlas: Molecular Identification of over Sixty Amacrine Cell Types.
Wenjun Yan, Mallory A Laboulaye, Nicholas M Tran, Irene E Whitney, Inbal Benhar, Joshua R Sanes. J Neurosci 2020
66
25

The functional diversity of retinal ganglion cells in the mouse.
Tom Baden, Philipp Berens, Katrin Franke, Miroslav Román Rosón, Matthias Bethge, Thomas Euler. Nature 2016
447
25

Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification.
Brian S Clark, Genevieve L Stein-O'Brien, Fion Shiau, Gabrielle H Cannon, Emily Davis-Marcisak, Thomas Sherman, Clayton P Santiago, Thanh V Hoang, Fatemeh Rajaii, Rebecca E James-Esposito,[...]. Neuron 2019
157
25

Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration.
Madhvi Menon, Shahin Mohammadi, Jose Davila-Velderrain, Brittany A Goods, Tanina D Cadwell, Yu Xing, Anat Stemmer-Rachamimov, Alex K Shalek, John Christopher Love, Manolis Kellis,[...]. Nat Commun 2019
103
22

Retinal bipolar cells: elementary building blocks of vision.
Thomas Euler, Silke Haverkamp, Timm Schubert, Tom Baden. Nat Rev Neurosci 2014
212
22

Understanding the retinal basis of vision across species.
Tom Baden, Thomas Euler, Philipp Berens. Nat Rev Neurosci 2020
76
22

Gene regulatory networks controlling vertebrate retinal regeneration.
Thanh Hoang, Jie Wang, Patrick Boyd, Fang Wang, Clayton Santiago, Lizhi Jiang, Sooyeon Yoo, Manuela Lahne, Levi J Todd, Meng Jia,[...]. Science 2020
95
22

A community-based transcriptomics classification and nomenclature of neocortical cell types.
Rafael Yuste, Michael Hawrylycz, Nadia Aalling, Argel Aguilar-Valles, Detlev Arendt, Ruben Armañanzas, Giorgio A Ascoli, Concha Bielza, Vahid Bokharaie, Tobias Borgtoft Bergmann,[...]. Nat Neurosci 2020
74
18



The retinal basis of vision in chicken.
M Seifert, T Baden, D Osorio. Semin Cell Dev Biol 2020
12
41

Molecular classification of zebrafish retinal ganglion cells links genes to cell types to behavior.
Yvonne Kölsch, Joshua Hahn, Anna Sappington, Manuel Stemmer, António M Fernandes, Thomas O Helmbrecht, Shriya Lele, Salwan Butrus, Eva Laurell, Irene Arnold-Ammer,[...]. Neuron 2021
19
26

Satb1 Regulates Contactin 5 to Pattern Dendrites of a Mammalian Retinal Ganglion Cell.
Yi-Rong Peng, Nicholas M Tran, Arjun Krishnaswamy, Dimitar Kostadinov, Emily M Martersteck, Joshua R Sanes. Neuron 2017
55
18


Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
14

Integration of eQTL and a Single-Cell Atlas in the Human Eye Identifies Causal Genes for Age-Related Macular Degeneration.
Luz D Orozco, Hsu-Hsin Chen, Christian Cox, Kenneth J Katschke, Rommel Arceo, Carmina Espiritu, Patrick Caplazi, Sarajane Saturnio Nghiem, Ying-Jiun Chen, Zora Modrusan,[...]. Cell Rep 2020
61
14

Bipolar cell-photoreceptor connectivity in the zebrafish (Danio rerio) retina.
Yong N Li, Taro Tsujimura, Shoji Kawamura, John E Dowling. J Comp Neurol 2012
44
14

Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup.
Trevor D Lamb, Shaun P Collin, Edward N Pugh. Nat Rev Neurosci 2007
248
14

Heterogeneity of horizontal cells in the chicken retina.
Andy J Fischer, Jennifer J Stanke, Gina Aloisio, Heather Hoy, William K Stell. J Comp Neurol 2007
66
14


The Retinal Basis of Vertebrate Color Vision.
T Baden, D Osorio. Annu Rev Vis Sci 2019
29
14

Connectomic reconstruction of the inner plexiform layer in the mouse retina.
Moritz Helmstaedter, Kevin L Briggman, Srinivas C Turaga, Viren Jain, H Sebastian Seung, Winfried Denk. Nature 2013
492
14


A comparison of single-cell trajectory inference methods.
Wouter Saelens, Robrecht Cannoodt, Helena Todorov, Yvan Saeys. Nat Biotechnol 2019
440
14

Generating and Using Transcriptomically Based Retinal Cell Atlases.
Karthik Shekhar, Joshua R Sanes. Annu Rev Vis Sci 2021
6
66

Cell fate determination in the vertebrate retina.
C L Cepko, C P Austin, X Yang, M Alexiades, D Ezzeddine. Proc Natl Acad Sci U S A 1996
770
11

The visual ecology of avian photoreceptors.
N S Hart. Prog Retin Eye Res 2001
270
11

The chick eye in vision research: An excellent model for the study of ocular disease.
C Ellis Wisely, Javed A Sayed, Heather Tamez, Chris Zelinka, Mohamed H Abdel-Rahman, Andy J Fischer, Colleen M Cebulla. Prog Retin Eye Res 2017
35
11

MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data.
Greg Finak, Andrew McDavid, Masanao Yajima, Jingyuan Deng, Vivian Gersuk, Alex K Shalek, Chloe K Slichter, Hannah W Miller, M Juliana McElrath, Martin Prlic,[...]. Genome Biol 2015
869
11

T-box transcription regulator Tbr2 is essential for the formation and maintenance of Opn4/melanopsin-expressing intrinsically photosensitive retinal ganglion cells.
Chai-An Mao, Hongyan Li, Zhijing Zhang, Takae Kiyama, Satchidananda Panda, Samer Hattar, Christophe P Ribelayga, Stephen L Mills, Steven W Wang. J Neurosci 2014
37
11

Diverse Central Projection Patterns of Retinal Ganglion Cells.
Emily M Martersteck, Karla E Hirokawa, Mariah Evarts, Amy Bernard, Xin Duan, Yang Li, Lydia Ng, Seung W Oh, Benjamin Ouellette, Joshua J Royall,[...]. Cell Rep 2017
105
11

Massively parallel digital transcriptional profiling of single cells.
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
11

Single-nuclei RNA-seq on human retinal tissue provides improved transcriptome profiling.
Qingnan Liang, Rachayata Dharmat, Leah Owen, Akbar Shakoor, Yumei Li, Sangbae Kim, Albert Vitale, Ivana Kim, Denise Morgan, Shaoheng Liang,[...]. Nat Commun 2019
48
11

Single-Cell Analysis of Human Retina Identifies Evolutionarily Conserved and Species-Specific Mechanisms Controlling Development.
Yufeng Lu, Fion Shiau, Wenyang Yi, Suying Lu, Qian Wu, Joel D Pearson, Alyssa Kallman, Suijuan Zhong, Thanh Hoang, Zhentao Zuo,[...]. Dev Cell 2020
62
11

Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution.
Cameron S Cowan, Magdalena Renner, Martina De Gennaro, Brigitte Gross-Scherf, David Goldblum, Yanyan Hou, Martin Munz, Tiago M Rodrigues, Jacek Krol, Tamas Szikra,[...]. Cell 2020
135
11


On the development of the stratification of the inner plexiform layer in the chick retina.
Ulrich Drenhaus, Patrizia Morino, Rüdiger W Veh. J Comp Neurol 2003
21
14

OTX2 represses sister cell fate choices in the developing retina to promote photoreceptor specification.
Miruna Georgiana Ghinia Tegla, Diego F Buenaventura, Diana Y Kim, Cassandra Thakurdin, Kevin C Gonzalez, Mark M Emerson. Elife 2020
15
20

Cholinergic amacrine cells of the chicken retina: a light and electron microscope immunocytochemical study.
T J Millar, I Ishimoto, I W Chubb, M L Epstein, C D Johnson, I G Morgan. Neuroscience 1987
87
11

Spatial and Temporal Patterns of Neurogenesis in the Chick Retina.
Carmen Prada, José Puga, Luisa Pérez-Méndez, Rosario López, Galo Ramírez. Eur J Neurosci 1991
338
11

New functions of Müller cells.
Andreas Reichenbach, Andreas Bringmann. Glia 2013
385
11

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.