A citation-based method for searching scientific literature

Clara Hermant, Maria-Elena Torres-Padilla. Genes Dev 2021
Times Cited: 9







List of co-cited articles
131 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Regulatory activities of transposable elements: from conflicts to benefits.
Edward B Chuong, Nels C Elde, Cédric Feschotte. Nat Rev Genet 2017
494
55

LINE-mediated retrotransposition of marked Alu sequences.
Marie Dewannieux, Cécile Esnault, Thierry Heidmann. Nat Genet 2003
683
44

Transposable elements are the primary source of novelty in primate gene regulation.
Marco Trizzino, YoSon Park, Marcia Holsbach-Beltrame, Katherine Aracena, Katelyn Mika, Minal Caliskan, George H Perry, Vincent J Lynch, Christopher D Brown. Genome Res 2017
85
44

Endogenous retroviruses function as species-specific enhancer elements in the placenta.
Edward B Chuong, M A Karim Rumi, Michael J Soares, Julie C Baker. Nat Genet 2013
205
44

Regulatory evolution of innate immunity through co-option of endogenous retroviruses.
Edward B Chuong, Nels C Elde, Cédric Feschotte. Science 2016
367
44


Mobile DNA in Health and Disease.
Haig H Kazazian, John V Moran. N Engl J Med 2017
140
44

Transposable elements have rewired the core regulatory network of human embryonic stem cells.
Galih Kunarso, Na-Yu Chia, Justin Jeyakani, Catalina Hwang, Xinyi Lu, Yun-Shen Chan, Huck-Hui Ng, Guillaume Bourque. Nat Genet 2010
470
44

Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
44

Evolution of the mammalian transcription factor binding repertoire via transposable elements.
Guillaume Bourque, Bernard Leong, Vinsensius B Vega, Xi Chen, Yen Ling Lee, Kandhadayar G Srinivasan, Joon-Lin Chew, Yijun Ruan, Chia-Lin Wei, Huck Hui Ng,[...]. Genome Res 2008
322
44

Author Correction: Regulation of transposable elements by DNA modifications.
Özgen Deniz, Jennifer M Frost, Miguel R Branco. Nat Rev Genet 2019
68
44

Host-transposon interactions: conflict, cooperation, and cooption.
Rachel L Cosby, Ni-Chen Chang, Cédric Feschotte. Genes Dev 2019
71
33

Hominoid-Specific Transposable Elements and KZFPs Facilitate Human Embryonic Genome Activation and Control Transcription in Naive Human ESCs.
Julien Pontis, Evarist Planet, Sandra Offner, Priscilla Turelli, Julien Duc, Alexandre Coudray, Thorold W Theunissen, Rudolf Jaenisch, Didier Trono. Cell Stem Cell 2019
64
33

The majority of primate-specific regulatory sequences are derived from transposable elements.
Pierre-Étienne Jacques, Justin Jeyakani, Guillaume Bourque. PLoS Genet 2013
171
33

Ten things you should know about transposable elements.
Guillaume Bourque, Kathleen H Burns, Mary Gehring, Vera Gorbunova, Andrei Seluanov, Molly Hammell, Michaël Imbeault, Zsuzsanna Izsvák, Henry L Levin, Todd S Macfarlan,[...]. Genome Biol 2018
246
33

Primate-restricted KRAB zinc finger proteins and target retrotransposons control gene expression in human neurons.
Priscilla Turelli, Christopher Playfoot, Dephine Grun, Charlène Raclot, Julien Pontis, Alexandre Coudray, Christian Thorball, Julien Duc, Eugenia V Pankevich, Bart Deplancke,[...]. Sci Adv 2020
10
33

Transposable elements as a potent source of diverse cis-regulatory sequences in mammalian genomes.
Vasavi Sundaram, Joanna Wysocka. Philos Trans R Soc Lond B Biol Sci 2020
25
33

KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks.
Michaël Imbeault, Pierre-Yves Helleboid, Didier Trono. Nature 2017
191
33

Transposable element-derived sequences in vertebrate development.
Ema Etchegaray, Magali Naville, Jean-Nicolas Volff, Zofia Haftek-Terreau. Mob DNA 2021
10
33

Widespread contribution of transposable elements to the innovation of gene regulatory networks.
Vasavi Sundaram, Yong Cheng, Zhihai Ma, Daofeng Li, Xiaoyun Xing, Peter Edge, Michael P Snyder, Ting Wang. Genome Res 2014
202
33

Paleovirology of 'syncytins', retroviral env genes exapted for a role in placentation.
Christian Lavialle, Guillaume Cornelis, Anne Dupressoir, Cécile Esnault, Odile Heidmann, Cécile Vernochet, Thierry Heidmann. Philos Trans R Soc Lond B Biol Sci 2013
195
33

Activation of neuronal genes via LINE-1 elements upon global DNA demethylation in human neural progenitors.
Marie E Jönsson, Per Ludvik Brattås, Charlotte Gustafsson, Rebecca Petri, David Yudovich, Karolina Pircs, Shana Verschuere, Sofia Madsen, Jenny Hansson, Jonas Larsson,[...]. Nat Commun 2019
32
33

KAP1 controls endogenous retroviruses in embryonic stem cells.
Helen M Rowe, Johan Jakobsson, Daniel Mesnard, Jacques Rougemont, Séverine Reynard, Tugce Aktas, Pierre V Maillard, Hillary Layard-Liesching, Sonia Verp, Julien Marquis,[...]. Nature 2010
454
33

Roles for retrotransposon insertions in human disease.
Dustin C Hancks, Haig H Kazazian. Mob DNA 2016
275
33


A family of transposable elements co-opted into developmental enhancers in the mouse neocortex.
James H Notwell, Tisha Chung, Whitney Heavner, Gill Bejerano. Nat Commun 2015
48
33

A Field Guide to Eukaryotic Transposable Elements.
Jonathan N Wells, Cédric Feschotte. Annu Rev Genet 2020
22
33

Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells.
Yanxiao Zhang, Ting Li, Sebastian Preissl, Maria Luisa Amaral, Jonathan D Grinstein, Elie N Farah, Eugin Destici, Yunjiang Qiu, Rong Hu, Ah Young Lee,[...]. Nat Genet 2019
78
33

Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells.
Jichang Wang, Gangcai Xie, Manvendra Singh, Avazeh T Ghanbarian, Tamás Raskó, Attila Szvetnik, Huiqiang Cai, Daniel Besser, Alessandro Prigione, Nina V Fuchs,[...]. Nature 2014
228
33

Embryonic stem cell potency fluctuates with endogenous retrovirus activity.
Todd S Macfarlan, Wesley D Gifford, Shawn Driscoll, Karen Lettieri, Helen M Rowe, Dario Bonanomi, Amy Firth, Oded Singer, Didier Trono, Samuel L Pfaff. Nature 2012
556
33

Functional evaluation of transposable elements as enhancers in mouse embryonic and trophoblast stem cells.
Christopher D Todd, Özgen Deniz, Darren Taylor, Miguel R Branco. Elife 2019
43
33

Regulation of transposable elements by DNA modifications.
Özgen Deniz, Jennifer M Frost, Miguel R Branco. Nat Rev Genet 2019
75
33

Conserved roles of mouse DUX and human DUX4 in activating cleavage-stage genes and MERVL/HERVL retrotransposons.
Peter G Hendrickson, Jessie A Doráis, Edward J Grow, Jennifer L Whiddon, Jong-Won Lim, Candice L Wike, Bradley D Weaver, Christian Pflueger, Benjamin R Emery, Aaron L Wilcox,[...]. Nat Genet 2017
256
33

The origin and behavior of mutable loci in maize.
B McCLINTOCK. Proc Natl Acad Sci U S A 1950
717
33

Role of Transposable Elements in Gene Regulation in the Human Genome.
Arsala Ali, Kyudong Han, Ping Liang. Life (Basel) 2021
9
33

KRAB-zinc finger protein gene expansion in response to active retrotransposons in the murine lineage.
Gernot Wolf, Alberto de Iaco, Ming-An Sun, Melania Bruno, Matthew Tinkham, Don Hoang, Apratim Mitra, Sherry Ralls, Didier Trono, Todd S Macfarlan. Elife 2020
21
33

Recurrent evolution of vertebrate transcription factors by transposase capture.
Rachel L Cosby, Julius Judd, Ruiling Zhang, Alan Zhong, Nathaniel Garry, Ellen J Pritham, Cédric Feschotte. Science 2021
23
33

LINE-1 activation after fertilization regulates global chromatin accessibility in the early mouse embryo.
Joanna W Jachowicz, Xinyang Bing, Julien Pontabry, Ana Bošković, Oliver J Rando, Maria-Elena Torres-Padilla. Nat Genet 2017
116
33

Functional cis-regulatory modules encoded by mouse-specific endogenous retrovirus.
Vasavi Sundaram, Mayank N K Choudhary, Erica Pehrsson, Xiaoyun Xing, Christopher Fiore, Manishi Pandey, Brett Maricque, Methma Udawatta, Duc Ngo, Yujie Chen,[...]. Nat Commun 2017
26
22

The impact of retrotransposons on human genome evolution.
Richard Cordaux, Mark A Batzer. Nat Rev Genet 2009
950
22

Warning SINEs: Alu elements, evolution of the human brain, and the spectrum of neurological disease.
Peter A Larsen, Kelsie E Hunnicutt, Roxanne J Larsen, Anne D Yoder, Ann M Saunders. Chromosome Res 2018
24
22

Increased l1 retrotransposition in the neuronal genome in schizophrenia.
Miki Bundo, Manabu Toyoshima, Yohei Okada, Wado Akamatsu, Junko Ueda, Taeko Nemoto-Miyauchi, Fumiko Sunaga, Michihiro Toritsuka, Daisuke Ikawa, Akiyoshi Kakita,[...]. Neuron 2014
183
22

Exaptation at the molecular genetic level.
Jürgen Brosius. Sci China Life Sci 2019
6
33

Human Endogenous Retroviruses in Neurological Diseases.
Patrick Küry, Avindra Nath, Alain Créange, Antonina Dolei, Patrice Marche, Julian Gold, Gavin Giovannoni, Hans-Peter Hartung, Hervé Perron. Trends Mol Med 2018
107
22


Organizational principles of 3D genome architecture.
M Jordan Rowley, Victor G Corces. Nat Rev Genet 2018
323
22

Human transposon tectonics.
Kathleen H Burns, Jef D Boeke. Cell 2012
182
22

Human genomic deletions mediated by recombination between Alu elements.
Shurjo K Sen, Kyudong Han, Jianxin Wang, Jungnam Lee, Hui Wang, Pauline A Callinan, Matthew Dyer, Richard Cordaux, Ping Liang, Mark A Batzer. Am J Hum Genet 2006
206
22




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.