A citation-based method for searching scientific literature

Marlene F Schmidt, Zhong Yan Gan, David Komander, Grant Dewson. Cell Death Differ 2021
Times Cited: 60







List of co-cited articles
484 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The ubiquitin code.
David Komander, Michael Rape. Annu Rev Biochem 2012
11

Ubiquitin modifications.
Kirby N Swatek, David Komander. Cell Res 2016
810
10

TDP-43 is a component of ubiquitin-positive tau-negative inclusions in frontotemporal lobar degeneration and amyotrophic lateral sclerosis.
Tetsuaki Arai, Masato Hasegawa, Haruhiko Akiyama, Kenji Ikeda, Takashi Nonaka, Hiroshi Mori, David Mann, Kuniaki Tsuchiya, Mari Yoshida, Yoshio Hashizume,[...]. Biochem Biophys Res Commun 2006
10

The mitochondrial deubiquitinase USP30 opposes parkin-mediated mitophagy.
Baris Bingol, Joy S Tea, Lilian Phu, Mike Reichelt, Corey E Bakalarski, Qinghua Song, Oded Foreman, Donald S Kirkpatrick, Morgan Sheng. Nature 2014
476
10

Deubiquitylating enzymes and drug discovery: emerging opportunities.
Jeanine A Harrigan, Xavier Jacq, Niall M Martin, Stephen P Jackson. Nat Rev Drug Discov 2018
309
8

Breaking the chains: deubiquitylating enzyme specificity begets function.
Michael J Clague, Sylvie Urbé, David Komander. Nat Rev Mol Cell Biol 2019
259
8

Ubiquitin signaling in neurodegenerative diseases: an autophagy and proteasome perspective.
François Le Guerroué, Richard J Youle. Cell Death Differ 2021
12
41

USP30 sets a trigger threshold for PINK1-PARKIN amplification of mitochondrial ubiquitylation.
Emma V Rusilowicz-Jones, Jane Jardine, Andreas Kallinos, Adan Pinto-Fernandez, Franziska Guenther, Mariacarmela Giurrandino, Francesco G Barone, Katy McCarron, Christopher J Burke, Alejandro Murad,[...]. Life Sci Alliance 2020
31
16


Enhancement of proteasome activity by a small-molecule inhibitor of USP14.
Byung-Hoon Lee, Min Jae Lee, Soyeon Park, Dong-Chan Oh, Suzanne Elsasser, Ping-Chung Chen, Carlos Gartner, Nevena Dimova, John Hanna, Steven P Gygi,[...]. Nature 2010
662
8

USP30 and parkin homeostatically regulate atypical ubiquitin chains on mitochondria.
Christian N Cunningham, Joshua M Baughman, Lilian Phu, Joy S Tea, Christine Yu, Mary Coons, Donald S Kirkpatrick, Baris Bingol, Jacob E Corn. Nat Cell Biol 2015
176
8

Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
Shireen A Sarraf, Malavika Raman, Virginia Guarani-Pereira, Mathew E Sowa, Edward L Huttlin, Steven P Gygi, J Wade Harper. Nature 2013
661
8

The ubiquitin pathway in Parkinson's disease.
E Leroy, R Boyer, G Auburger, B Leube, G Ulm, E Mezey, G Harta, M J Brownstein, S Jonnalagada, T Chernova,[...]. Nature 1998
8

Novel highly selective inhibitors of ubiquitin specific protease 30 (USP30) accelerate mitophagy.
Arthur F Kluge, Bharat R Lagu, Pranab Maiti, Mahaboobi Jaleel, Michael Webb, Jyoti Malhotra, Ashley Mallat, P Akhila Srinivas, James E Thompson. Bioorg Med Chem Lett 2018
59
8

Ubiquitinated TDP-43 in frontotemporal lobar degeneration and amyotrophic lateral sclerosis.
Manuela Neumann, Deepak M Sampathu, Linda K Kwong, Adam C Truax, Matthew C Micsenyi, Thomas T Chou, Jennifer Bruce, Theresa Schuck, Murray Grossman, Christopher M Clark,[...]. Science 2006
8

Converging mechanisms in ALS and FTD: disrupted RNA and protein homeostasis.
Shuo-Chien Ling, Magdalini Polymenidou, Don W Cleveland. Neuron 2013
985
8

Ubiquitin: structures, functions, mechanisms.
Cecile M Pickart, Michael J Eddins. Biochim Biophys Acta 2004
894
6

Parkin is recruited selectively to impaired mitochondria and promotes their autophagy.
Derek Narendra, Atsushi Tanaka, Der-Fen Suen, Richard J Youle. J Cell Biol 2008
6

Deubiquitylating enzymes in neuronal health and disease.
Fatima Amer-Sarsour, Alina Kordonsky, Yevgeny Berdichevsky, Gali Prag, Avraham Ashkenazi. Cell Death Dis 2021
8
50

USP8 regulates mitophagy by removing K6-linked ubiquitin conjugates from parkin.
Thomas M Durcan, Matthew Y Tang, Joëlle R Pérusse, Eman A Dashti, Miguel A Aguileta, Gian-Luca McLelland, Priti Gros, Thomas A Shaler, Denis Faubert, Benoit Coulombe,[...]. EMBO J 2014
214
6


TDP-43 is intercellularly transmitted across axon terminals.
Marisa S Feiler, Benjamin Strobel, Axel Freischmidt, Anika M Helferich, Julia Kappel, Bryson M Brewer, Deyu Li, Dietmar R Thal, Paul Walther, Albert C Ludolph,[...]. J Cell Biol 2015
177
6

The increasing complexity of the ubiquitin code.
Richard Yau, Michael Rape. Nat Cell Biol 2016
517
6

TDP-43 pathology disrupts nuclear pore complexes and nucleocytoplasmic transport in ALS/FTD.
Ching-Chieh Chou, Yi Zhang, Mfon E Umoh, Spencer W Vaughan, Ileana Lorenzini, Feilin Liu, Melissa Sayegh, Paul G Donlin-Asp, Yu Han Chen, Duc M Duong,[...]. Nat Neurosci 2018
245
6

Ubiquitin Homeostasis Is Disrupted in TDP-43 and FUS Cell Models of ALS.
Natalie E Farrawell, Luke McAlary, Jeremy S Lum, Christen G Chisholm, Sadaf T Warraich, Ian P Blair, Kara L Vine, Darren N Saunders, Justin J Yerbury. iScience 2020
13
30

The ubiquitin system.
A Hershko, A Ciechanover. Annu Rev Biochem 1998
6

The neuropathological diagnosis of Alzheimer's disease.
Michael A DeTure, Dennis W Dickson. Mol Neurodegener 2019
544
6

Insights into ubiquitin chain architecture using Ub-clipping.
Kirby N Swatek, Joanne L Usher, Anja F Kueck, Christina Gladkova, Tycho E T Mevissen, Jonathan N Pruneda, Tim Skern, David Komander. Nature 2019
87
6

Global Landscape and Dynamics of Parkin and USP30-Dependent Ubiquitylomes in iNeurons during Mitophagic Signaling.
Alban Ordureau, Joao A Paulo, Jiuchun Zhang, Heeseon An, Kirby N Swatek, Joe R Cannon, Qiaoqiao Wan, David Komander, J Wade Harper. Mol Cell 2020
67
6

Mutations in the parkin gene cause autosomal recessive juvenile parkinsonism.
T Kitada, S Asakawa, N Hattori, H Matsumine, Y Yamamura, S Minoshima, M Yokochi, Y Mizuno, N Shimizu. Nature 1998
6

Mechanism and regulation of the Lys6-selective deubiquitinase USP30.
Malte Gersch, Christina Gladkova, Alexander F Schubert, Martin A Michel, Sarah Maslen, David Komander. Nat Struct Mol Biol 2017
101
6

Ubiquitination in the regulation of inflammatory cell death and cancer.
Peter E Cockram, Matthias Kist, Sumit Prakash, Si-Han Chen, Ingrid E Wertz, Domagoj Vucic. Cell Death Differ 2021
18
16

Deubiquitylases in developmental ubiquitin signaling and congenital diseases.
Mohammed A Basar, David B Beck, Achim Werner. Cell Death Differ 2021
21
14

Adaptors as the regulators of HECT ubiquitin ligases.
Sonia Shalini Shah, Sharad Kumar. Cell Death Differ 2021
14
21


Ubiquitin signaling in cell cycle control and tumorigenesis.
Fabin Dang, Li Nie, Wenyi Wei. Cell Death Differ 2021
46
6

Oxidative modifications and down-regulation of ubiquitin carboxyl-terminal hydrolase L1 associated with idiopathic Parkinson's and Alzheimer's diseases.
Joungil Choi, Allan I Levey, Susan T Weintraub, Howard D Rees, Marla Gearing, Lih-Shen Chin, Lian Li. J Biol Chem 2004
439
5

The deubiquitinase USP15 antagonizes Parkin-mediated mitochondrial ubiquitination and mitophagy.
Tom Cornelissen, Dominik Haddad, Fieke Wauters, Cindy Van Humbeeck, Wim Mandemakers, Brianada Koentjoro, Carolyn Sue, Kris Gevaert, Bart De Strooper, Patrik Verstreken,[...]. Hum Mol Genet 2014
196
5

The role of parkin in familial and sporadic Parkinson's disease.
Ted M Dawson, Valina L Dawson. Mov Disord 2010
239
5

Deubiquitinating enzymes regulate PARK2-mediated mitophagy.
Yuqing Wang, Mauro Serricchio, Miluska Jauregui, Riya Shanbhag, Tasha Stoltz, Caitlin T Di Paolo, Peter K Kim, G Angus McQuibban. Autophagy 2015
135
5

USP33 deubiquitinates PRKN/parkin and antagonizes its role in mitophagy.
Kaifeng Niu, Hongbo Fang, Zixiang Chen, Yuqi Zhu, Qunsong Tan, Di Wei, Yueyang Li, Adayabalam S Balajee, Yongliang Zhao. Autophagy 2020
26
11

Molecular basis of USP7 inhibition by selective small-molecule inhibitors.
Andrew P Turnbull, Stephanos Ioannidis, Wojciech W Krajewski, Adan Pinto-Fernandez, Claire Heride, Agnes C L Martin, Louise M Tonkin, Elizabeth C Townsend, Shane M Buker, David R Lancia,[...]. Nature 2017
199
5

Parkinson's disease.
Lorraine V Kalia, Anthony E Lang. Lancet 2015
5

Deubiquitinase Usp8 regulates α-synuclein clearance and modifies its toxicity in Lewy body disease.
Zoi Alexopoulou, Johannes Lang, Rebecca M Perrett, Myriam Elschami, Madeleine E D Hurry, Hyoung Tae Kim, Dimitra Mazaraki, Aron Szabo, Benedikt M Kessler, Alfred Lewis Goldberg,[...]. Proc Natl Acad Sci U S A 2016
75
5

USP30 deubiquitylates mitochondrial Parkin substrates and restricts apoptotic cell death.
Jin-Rui Liang, Aitor Martinez, Jon D Lane, Ugo Mayor, Michael J Clague, Sylvie Urbé. EMBO Rep 2015
86
5


A small natural molecule promotes mitochondrial fusion through inhibition of the deubiquitinase USP30.
Wen Yue, Ziheng Chen, Haiyang Liu, Chen Yan, Ming Chen, Du Feng, Chaojun Yan, Hao Wu, Lei Du, Yueying Wang,[...]. Cell Res 2014
121
5

A Multi-network Approach Identifies Protein-Specific Co-expression in Asymptomatic and Symptomatic Alzheimer's Disease.
Nicholas T Seyfried, Eric B Dammer, Vivek Swarup, Divya Nandakumar, Duc M Duong, Luming Yin, Qiudong Deng, Tram Nguyen, Chadwick M Hales, Thomas Wingo,[...]. Cell Syst 2017
197
5

Reverse engineering Lewy bodies: how far have we come and how far can we go?
Mohamed Bilal Fares, Somanath Jagannath, Hilal A Lashuel. Nat Rev Neurosci 2021
46
6

Post-translational regulation of ubiquitin signaling.
Lei Song, Zhao-Qing Luo. J Cell Biol 2019
86
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.