A citation-based method for searching scientific literature

Hui Qiu, Zhi-Ying Shao, Xin Wen, Long-Zhen Zhang. Am J Cancer Res 2020
Times Cited: 3







List of co-cited articles
6 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity.
Kristen M Turner, Viraj Deshpande, Doruk Beyter, Tomoyuki Koga, Jessica Rusert, Catherine Lee, Bin Li, Karen Arden, Bing Ren, David A Nathanson,[...]. Nature 2017
261
66

Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers.
Hoon Kim, Nam-Phuong Nguyen, Kristen Turner, Sihan Wu, Amit D Gujar, Jens Luebeck, Jihe Liu, Viraj Deshpande, Utkrisht Rajkumar, Sandeep Namburi,[...]. Nat Genet 2020
84
66

Novel insights into extrachromosomal DNA: redefining the onco-drivers of tumor progression.
Xiang Gu, Jie Yu, Peiwei Chai, Shengfang Ge, Xianqun Fan. J Exp Clin Cancer Res 2020
11
66

Oncogenic extrachromosomal DNA functions as mobile enhancers to globally amplify chromosomal transcription.
Yanfen Zhu, Amit D Gujar, Chee-Hong Wong, Harianto Tjong, Chew Yee Ngan, Liang Gong, Yi-An Chen, Hoon Kim, Jihe Liu, Meihong Li,[...]. Cancer Cell 2021
35
66

Extrachromosomal oncogene amplification in tumour pathogenesis and evolution.
Roel G W Verhaak, Vineet Bafna, Paul S Mischel. Nat Rev Cancer 2019
101
66

Functional Enhancers Shape Extrachromosomal Oncogene Amplifications.
Andrew R Morton, Nergiz Dogan-Artun, Zachary J Faber, Graham MacLeod, Cynthia F Bartels, Megan S Piazza, Kevin C Allan, Stephen C Mack, Xiuxing Wang, Ryan C Gimple,[...]. Cell 2019
98
66



The emerging genomics and systems biology research lead to systems genomics studies.
Mary Qu Yang, Kenji Yoshigoe, William Yang, Weida Tong, Xiang Qin, A Dunker, Zhongxue Chen, Hamid R Arbania, Jun S Liu, Andrzej Niemierko,[...]. BMC Genomics 2014
16
33

Chromosomal translocations and palindromic AT-rich repeats.
Takema Kato, Hiroki Kurahashi, Beverly S Emanuel. Curr Opin Genet Dev 2012
48
33

The pattern of gene amplification is determined by the chromosomal location of hairpin-capped breaks.
Vidhya Narayanan, Piotr A Mieczkowski, Hyun-Min Kim, Thomas D Petes, Kirill S Lobachev. Cell 2006
123
33

The second case of a t(17;22) in a family with neurofibromatosis type 1: sequence analysis of the breakpoint regions.
H Kehrer-Sawatzki, J Häussler, W Krone, H Bode, D E Jenne, K U Mehnert, U Tümmers, G Assum. Hum Genet 1997
72
33

Double-strand break end resection and repair pathway choice.
Lorraine S Symington, Jean Gautier. Annu Rev Genet 2011
951
33

A large beta-thalassemia deletion in a family of Indonesian-Malay descent.
A J Dimovski, E Baysal, D G Efremov, J F Prior, J L Raven, G D Efremov, T H Huisman. Hemoglobin 1996
10
33

Homology-mediated end-capping as a primary step of sister chromatid fusion in the breakage-fusion-bridge cycles.
Michael Marotta, Xiongfong Chen, Takaaki Watanabe, Pieter W Faber, Scott J Diede, Stephen Tapscott, Raymond Tubbs, Anna Kondratova, Robert Stephens, Hisashi Tanaka. Nucleic Acids Res 2013
14
33


The fragility of a structurally diverse duplication block triggers recurrent genomic amplification.
Ryusuke Suzuki, Michael M Murata, Nicholas Manguso, Takaaki Watanabe, Lila Mouakkad-Montoya, Fumie Igari, Md Maminur Rahman, Ying Qu, Xiaojiang Cui, Armando E Giuliano,[...]. Nucleic Acids Res 2021
4
33


Size-dependent palindrome-induced intrachromosomal recombination in yeast.
Berislav Lisnić, Ivan-Kresimir Svetec, Anamarija Stafa, Zoran Zgaga. DNA Repair (Amst) 2009
12
33

Size-dependent antirecombinogenic effect of short spacers on palindrome recombinogenicity.
Marina Svetec Miklenić, Nikolina Gatalica, Angela Matanović, Bojan Žunar, Anamarija Štafa, Berislav Lisnić, Ivan Krešimir Svetec. DNA Repair (Amst) 2020
3
33

The relaxation time for a cruciform structure in superhelical DNA.
A V Vologodskii, M D Frank-Kamenetskii. FEBS Lett 1983
12
33

RPA antagonizes microhomology-mediated repair of DNA double-strand breaks.
Sarah K Deng, Bryan Gibb, Mariana Justino de Almeida, Eric C Greene, Lorraine S Symington. Nat Struct Mol Biol 2014
116
33

Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures.
Catherine Naughton, Nicolaos Avlonitis, Samuel Corless, James G Prendergast, Ioulia K Mati, Paul P Eijk, Scott L Cockroft, Mark Bradley, Bauke Ylstra, Nick Gilbert. Nat Struct Mol Biol 2013
226
33

The distribution of inverted repeat sequences in the Saccharomyces cerevisiae genome.
Eva M Strawbridge, Gary Benson, Yevgeniy Gelfand, Craig J Benham. Curr Genet 2010
22
33

A palindrome-mediated recurrent translocation with 3:1 meiotic nondisjunction: the t(8;22)(q24.13;q11.21).
Molly B Sheridan, Takema Kato, Chad Haldeman-Englert, G Reza Jalali, Jeff M Milunsky, Ying Zou, Ruediger Klaes, Georgio Gimelli, Stefania Gimelli, Robert M Gemmill,[...]. Am J Hum Genet 2010
32
33

Genomic characterization of two large Alu-mediated rearrangements of the BRCA1 gene.
Ana Peixoto, Manuela Pinheiro, Lígia Massena, Catarina Santos, Pedro Pinto, Patrícia Rocha, Carla Pinto, Manuel R Teixeira. J Hum Genet 2013
21
33

DNA secondary structure is influenced by genetic variation and alters susceptibility to de novo translocation.
Takema Kato, Hidehito Inagaki, Maoqing Tong, Hiroshi Kogo, Tamae Ohye, Kouji Yamada, Makiko Tsutsumi, Beverly S Emanuel, Hiroki Kurahashi. Mol Cytogenet 2011
7
33

Telomeres in cancer: tumour suppression and genome instability.
John Maciejowski, Titia de Lange. Nat Rev Mol Cell Biol 2017
319
33


A reference catalog of DNA palindromes in the human genome and their variations in 1000 Genomes.
Madhavi K Ganapathiraju, Sandeep Subramanian, Srilakshmi Chaparala, Kalyani B Karunakaran. Hum Genome Var 2020
3
33

GAP-Seq: a method for identification of DNA palindromes.
Hui Yang, Natalia Volfovsky, Alison Rattray, Xiongfong Chen, Hisashi Tanaka, Jeffrey Strathern. BMC Genomics 2014
6
33

Real-time detection of cruciform extrusion by single-molecule DNA nanomanipulation.
T Ramreddy, R Sachidanandam, T R Strick. Nucleic Acids Res 2011
21
33

Chromosomal breakage-fusion-bridge events cause genetic intratumor heterogeneity.
D Gisselsson, L Pettersson, M Höglund, M Heidenblad, L Gorunova, J Wiegant, F Mertens, P Dal Cin, F Mitelman, N Mandahl. Proc Natl Acad Sci U S A 2000
287
33


Analysis of the t(3;8) of hereditary renal cell carcinoma: a palindrome-mediated translocation.
Takema Kato, Colleen P Franconi, Molly B Sheridan, April M Hacker, Hidehito Inagakai, Thomas W Glover, Martin F Arlt, Harry A Drabkin, Robert M Gemmill, Hiroki Kurahashi,[...]. Cancer Genet 2014
14
33

Genome-wide Identification of Structure-Forming Repeats as Principal Sites of Fork Collapse upon ATR Inhibition.
Nishita Shastri, Yu-Chen Tsai, Suzanne Hile, Deondre Jordan, Barrett Powell, Jessica Chen, Dillon Maloney, Marei Dose, Yancy Lo, Theonie Anastassiadis,[...]. Mol Cell 2018
34
33

Digital karyotyping identifies thymidylate synthase amplification as a mechanism of resistance to 5-fluorouracil in metastatic colorectal cancer patients.
Tian-Li Wang, Luis A Diaz, Katharine Romans, Alberto Bardelli, Saurabh Saha, Gennaro Galizia, Michael Choti, Ross Donehower, Giovanni Parmigiani, Ie-Ming Shih,[...]. Proc Natl Acad Sci U S A 2004
144
33

Factors affecting inverted repeat stimulation of recombination and deletion in Saccharomyces cerevisiae.
K S Lobachev, B M Shor, H T Tran, W Taylor, J D Keen, M A Resnick, D A Gordenin. Genetics 1998
106
33

Alu repeats and human disease.
P L Deininger, M A Batzer. Mol Genet Metab 1999
638
33

Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
33

Novel patterns of genome rearrangement and their association with survival in breast cancer.
James Hicks, Alexander Krasnitz, B Lakshmi, Nicholas E Navin, Michael Riggs, Evan Leibu, Diane Esposito, Joan Alexander, Jen Troge, Vladimir Grubor,[...]. Genome Res 2006
244
33

Mre11-Sae2 and RPA Collaborate to Prevent Palindromic Gene Amplification.
Sarah K Deng, Yi Yin, Thomas D Petes, Lorraine S Symington. Mol Cell 2015
41
33


A tough row to hoe: when replication forks encounter DNA damage.
Darshil R Patel, Robert S Weiss. Biochem Soc Trans 2018
13
33

Structure and evolution of double minutes in diagnosis and relapse brain tumors.
Ke Xu, Liang Ding, Ti-Cheng Chang, Ying Shao, Jason Chiang, Heather Mulder, Shuoguo Wang, Tim I Shaw, Ji Wen, Laura Hover,[...]. Acta Neuropathol 2019
36
33

Tightly clustered 11q23 and 22q11 breakpoints permit PCR-based detection of the recurrent constitutional t(11;22).
H Kurahashi, T H Shaikh, E H Zackai, L Celle, D A Driscoll, M L Budarf, B S Emanuel. Am J Hum Genet 2000
67
33


The functional response of upstream DNA to dynamic supercoiling in vivo.
Fedor Kouzine, Suzanne Sanford, Zichrini Elisha-Feil, David Levens. Nat Struct Mol Biol 2008
210
33

Long inverted repeat transiently stalls DNA replication by forming hairpin structures on both leading and lagging strands.
Pey Jiun Lai, Chew Theng Lim, Hang Phuong Le, Tsutomu Katayama, David R F Leach, Asako Furukohri, Hisaji Maki. Genes Cells 2016
11
33

Patterns of segmental duplication in the human genome.
Liqing Zhang, Henry H S Lu, Wen-yu Chung, Jing Yang, Wen-Hsiung Li. Mol Biol Evol 2005
93
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.