A citation-based method for searching scientific literature

François Kroll, Gareth T Powell, Marcus Ghosh, Gaia Gestri, Paride Antinucci, Timothy J Hearn, Hande Tunbak, Sumi Lim, Harvey W Dennis, Joseph M Fernandez, David Whitmore, Elena Dreosti, Stephen W Wilson, Ellen J Hoffman, Jason Rihel. Elife 2021
Times Cited: 32







List of co-cited articles
200 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A Rapid Method for Directed Gene Knockout for Screening in G0 Zebrafish.
Roland S Wu, Ian I Lam, Hilary Clay, Daniel N Duong, Rahul C Deo, Shaun R Coughlin. Dev Cell 2018
133
40

Highly Efficient CRISPR-Cas9-Based Methods for Generating Deletion Mutations and F0 Embryos that Lack Gene Function in Zebrafish.
Kazuyuki Hoshijima, Michael J Jurynec, Dana Klatt Shaw, Ashley M Jacobi, Mark A Behlke, David Jonah Grunwald. Dev Cell 2019
88
40

The zebrafish reference genome sequence and its relationship to the human genome.
Kerstin Howe, Matthew D Clark, Carlos F Torroja, James Torrance, Camille Berthelot, Matthieu Muffato, John E Collins, Sean Humphray, Karen McLaren, Lucy Matthews,[...]. Nature 2013
31

Efficient genome editing in zebrafish using a CRISPR-Cas system.
Woong Y Hwang, Yanfang Fu, Deepak Reyon, Morgan L Maeder, Shengdar Q Tsai, Jeffry D Sander, Randall T Peterson, J-R Joanna Yeh, J Keith Joung. Nat Biotechnol 2013
31

Maximizing mutagenesis with solubilized CRISPR-Cas9 ribonucleoprotein complexes.
Alexa Burger, Helen Lindsay, Anastasia Felker, Christopher Hess, Carolin Anders, Elena Chiavacci, Jonas Zaugg, Lukas M Weber, Raul Catena, Martin Jinek,[...]. Development 2016
160
28

Efficient multiplex biallelic zebrafish genome editing using a CRISPR nuclease system.
Li-En Jao, Susan R Wente, Wenbiao Chen. Proc Natl Acad Sci U S A 2013
783
25

CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo.
Miguel A Moreno-Mateos, Charles E Vejnar, Jean-Denis Beaudoin, Juan P Fernandez, Emily K Mis, Mustafa K Khokha, Antonio J Giraldez. Nat Methods 2015
580
21

Genetic compensation triggered by mutant mRNA degradation.
Mohamed A El-Brolosy, Zacharias Kontarakis, Andrea Rossi, Carsten Kuenne, Stefan Günther, Nana Fukuda, Khrievono Kikhi, Giulia L M Boezio, Carter M Takacs, Shih-Lei Lai,[...]. Nature 2019
408
21

Rapid reverse genetic screening using CRISPR in zebrafish.
Arish N Shah, Crystal F Davey, Alex C Whitebirch, Adam C Miller, Cecilia B Moens. Nat Methods 2015
204
21

CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing.
Kornel Labun, Tessa G Montague, Maximilian Krause, Yamila N Torres Cleuren, Håkon Tjeldnes, Eivind Valen. Nucleic Acids Res 2019
359
21

Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of single-guide RNAs.
James A Gagnon, Eivind Valen, Summer B Thyme, Peng Huang, Laila Akhmetova, Andrea Pauli, Tessa G Montague, Steven Zimmerman, Constance Richter, Alexander F Schier. PLoS One 2014
510
21

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
21

The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio.
P Haffter, M Granato, M Brand, M C Mullins, M Hammerschmidt, D A Kane, J Odenthal, F J van Eeden, Y J Jiang, C P Heisenberg,[...]. Development 1996
18

High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9.
Gaurav K Varshney, Wuhong Pei, Matthew C LaFave, Jennifer Idol, Lisha Xu, Viviana Gallardo, Blake Carrington, Kevin Bishop, MaryPat Jones, Mingyu Li,[...]. Genome Res 2015
281
18

Guidelines for morpholino use in zebrafish.
Didier Y R Stainier, Erez Raz, Nathan D Lawson, Stephen C Ekker, Rebecca D Burdine, Judith S Eisen, Philip W Ingham, Stefan Schulte-Merker, Deborah Yelon, Brant M Weinstein,[...]. PLoS Genet 2017
183
18

A genetic screen for mutations affecting embryogenesis in zebrafish.
W Driever, L Solnica-Krezel, A F Schier, S C Neuhauss, J Malicki, D L Stemple, D Y Stainier, F Zwartkruis, S Abdelilah, Z Rangini,[...]. Development 1996
910
18

Expanding the CRISPR Toolbox in Zebrafish for Studying Development and Disease.
Kaili Liu, Cassidy Petree, Teresa Requena, Pratishtha Varshney, Gaurav K Varshney. Front Cell Dev Biol 2019
55
15

Effective targeted gene 'knockdown' in zebrafish.
A Nasevicius, S C Ekker. Nat Genet 2000
15

Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases.
Yannick Doyon, Jasmine M McCammon, Jeffrey C Miller, Farhoud Faraji, Catherine Ngo, George E Katibah, Rainier Amora, Toby D Hocking, Lei Zhang, Edward J Rebar,[...]. Nat Biotechnol 2008
614
15

Reverse genetic screening reveals poor correlation between morpholino-induced and mutant phenotypes in zebrafish.
F O Kok, M Shin, C-W Ni, A Gupta, A S Grosse, A van Impel, B C Kirchmaier, J Peterson-Maduro, G Kourkoulis, I Male,[...]. Dev Cell 2015
493
12

A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.
Martin Jinek, Krzysztof Chylinski, Ines Fonfara, Michael Hauer, Jennifer A Doudna, Emmanuelle Charpentier. Science 2012
12

Genetic compensation induced by deleterious mutations but not gene knockdowns.
Andrea Rossi, Zacharias Kontarakis, Claudia Gerri, Hendrik Nolte, Soraya Hölper, Marcus Krüger, Didier Y R Stainier. Nature 2015
720
12

CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing.
Miguel A Moreno-Mateos, Juan P Fernandez, Romain Rouet, Charles E Vejnar, Maura A Lane, Emily Mis, Mustafa K Khokha, Jennifer A Doudna, Antonio J Giraldez. Nat Commun 2017
139
12

Targeted gene disruption in somatic zebrafish cells using engineered TALENs.
Jeffry D Sander, Lindsay Cade, Cyd Khayter, Deepak Reyon, Randall T Peterson, J Keith Joung, Jing-Ruey J Yeh. Nat Biotechnol 2011
424
12

Precise Editing of the Zebrafish Genome Made Simple and Efficient.
Kazuyuki Hoshijima, Michael J Jurynec, David Jonah Grunwald. Dev Cell 2016
114
12

Efficient single-copy HDR by 5' modified long dsDNA donors.
Jose Arturo Gutierrez-Triana, Tinatini Tavhelidse, Thomas Thumberger, Isabelle Thomas, Beate Wittbrodt, Tanja Kellner, Kerim Anlas, Erika Tsingos, Joachim Wittbrodt. Elife 2018
39
12

CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool.
Manuel Stemmer, Thomas Thumberger, Maria Del Sol Keyer, Joachim Wittbrodt, Juan L Mateo. PLoS One 2015
436
12

One-step efficient generation of dual-function conditional knockout and geno-tagging alleles in zebrafish.
Wenyuan Li, Yage Zhang, Bingzhou Han, Lianyan Li, Muhang Li, Xiaochan Lu, Cheng Chen, Mengjia Lu, Yujie Zhang, Xuefeng Jia,[...]. Elife 2019
16
18

The art and design of genetic screens: zebrafish.
E E Patton, L I Zon. Nat Rev Genet 2001
315
9


Guided genetic screen to identify genes essential in the regeneration of hair cells and other tissues.
Wuhong Pei, Lisha Xu, Sunny C Huang, Kade Pettie, Jennifer Idol, Alberto Rissone, Erin Jimenez, Jason W Sinclair, Claire Slevin, Gaurav K Varshney,[...]. NPJ Regen Med 2018
17
17

Conditional mutagenesis by oligonucleotide-mediated integration of loxP sites in zebrafish.
Leonard Burg, Nicholas Palmer, Khrievono Kikhi, Evgeniya S Miroshnik, Helen Rueckert, Eleanor Gaddy, Carlee MacPherson Cunningham, Kenny Mattonet, Shih-Lei Lai, Rubén Marín-Juez,[...]. PLoS Genet 2018
24
12

ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering.
Thomas Gaj, Charles A Gersbach, Carlos F Barbas. Trends Biotechnol 2013
9

Production of clones of homozygous diploid zebra fish (Brachydanio rerio).
G Streisinger, C Walker, N Dower, D Knauber, F Singer. Nature 1981
742
9

A Survey of Validation Strategies for CRISPR-Cas9 Editing.
Monica F Sentmanat, Samuel T Peters, Colin P Florian, Jon P Connelly, Shondra M Pruett-Miller. Sci Rep 2018
134
9

Efficient Multiple Genome Modifications Induced by the crRNAs, tracrRNA and Cas9 Protein Complex in Zebrafish.
Hirohito Kotani, Kiyohito Taimatsu, Rie Ohga, Satoshi Ota, Atsuo Kawahara. PLoS One 2015
61
9

Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9.
John G Doench, Nicolo Fusi, Meagan Sullender, Mudra Hegde, Emma W Vaimberg, Katherine F Donovan, Ian Smith, Zuzana Tothova, Craig Wilen, Robert Orchard,[...]. Nat Biotechnol 2016
9

An automated high-resolution in vivo screen in zebrafish to identify chemical regulators of myelination.
Jason J Early, Katy Lh Cole, Jill M Williamson, Matthew Swire, Hari Kamadurai, Marc Muskavitch, David A Lyons. Elife 2018
44
9

Rapid Reverse Genetic Screening Using CRISPR in Zebrafish.
Arish N Shah, Crystal F Davey, Alex C Whitebirch, Adam C Miller, Cecilia B Moens. Zebrafish 2016
13
23

Reverse genetic screen reveals that Il34 facilitates yolk sac macrophage distribution and seeding of the brain.
Laura E Kuil, Nynke Oosterhof, Samuël N Geurts, Herma C van der Linde, Erik Meijering, Tjakko J van Ham. Dis Model Mech 2019
27
11


mRNA processing in mutant zebrafish lines generated by chemical and CRISPR-mediated mutagenesis produces unexpected transcripts that escape nonsense-mediated decay.
Jennifer L Anderson, Timothy S Mulligan, Meng-Chieh Shen, Hui Wang, Catherine M Scahill, Frederick J Tan, Shao J Du, Elisabeth M Busch-Nentwich, Steven A Farber. PLoS Genet 2017
60
9

Identification of 315 genes essential for early zebrafish development.
Adam Amsterdam, Robert M Nissen, Zhaoxia Sun, Eric C Swindell, Sarah Farrington, Nancy Hopkins. Proc Natl Acad Sci U S A 2004
610
9

CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering.
Kornel Labun, Tessa G Montague, James A Gagnon, Summer B Thyme, Eivind Valen. Nucleic Acids Res 2016
466
9

Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases.
Xiangdong Meng, Marcus B Noyes, Lihua J Zhu, Nathan D Lawson, Scot A Wolfe. Nat Biotechnol 2008
540
9

A CRISPR/Cas9 vector system for tissue-specific gene disruption in zebrafish.
Julien Ablain, Ellen M Durand, Song Yang, Yi Zhou, Leonard I Zon. Dev Cell 2015
225
9

Easy quantitative assessment of genome editing by sequence trace decomposition.
Eva K Brinkman, Tao Chen, Mario Amendola, Bas van Steensel. Nucleic Acids Res 2014
9

CRISPR gRNA phenotypic screening in zebrafish reveals pro-regenerative genes in spinal cord injury.
Marcus Keatinge, Themistoklis M Tsarouchas, Tahimina Munir, Nicola J Porter, Juan Larraz, Davide Gianni, Hui-Hsin Tsai, Catherina G Becker, David A Lyons, Thomas Becker. PLoS Genet 2021
12
25

Neural signatures of sleep in zebrafish.
Louis C Leung, Gordon X Wang, Romain Madelaine, Gemini Skariah, Koichi Kawakami, Karl Deisseroth, Alexander E Urban, Philippe Mourrain. Nature 2019
47
9



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.