A citation-based method for searching scientific literature

Rachel E Rodin, Yanmei Dou, Minseok Kwon, Maxwell A Sherman, Alissa M D'Gama, Ryan N Doan, Lariza M Rento, Kelly M Girskis, Craig L Bohrson, Sonia N Kim, Ajay Nadig, Lovelace J Luquette, Doga C Gulhan, Peter J Park, Christopher A Walsh. Nat Neurosci 2021
Times Cited: 12







List of co-cited articles
63 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Accurate detection of mosaic variants in sequencing data without matched controls.
Yanmei Dou, Minseok Kwon, Rachel E Rodin, Isidro Cortés-Ciriano, Ryan Doan, Lovelace J Luquette, Alon Galor, Craig Bohrson, Christopher A Walsh, Peter J Park. Nat Biotechnol 2020
13
33

The contribution of de novo coding mutations to autism spectrum disorder.
Ivan Iossifov, Brian J O'Roak, Stephan J Sanders, Michael Ronemus, Niklas Krumm, Dan Levy, Holly A Stessman, Kali T Witherspoon, Laura Vives, Karynne E Patterson,[...]. Nature 2014
33

Somatic mutation in single human neurons tracks developmental and transcriptional history.
Michael A Lodato, Mollie B Woodworth, Semin Lee, Gilad D Evrony, Bhaven K Mehta, Amir Karger, Soohyun Lee, Thomas W Chittenden, Alissa M D'Gama, Xuyu Cai,[...]. Science 2015
286
25

The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
25

Aging and neurodegeneration are associated with increased mutations in single human neurons.
Michael A Lodato, Rachel E Rodin, Craig L Bohrson, Michael E Coulter, Alison R Barton, Minseok Kwon, Maxwell A Sherman, Carl M Vitzthum, Lovelace J Luquette, Chandri N Yandava,[...]. Science 2018
212
25

Different mutational rates and mechanisms in human cells at pregastrulation and neurogenesis.
Taejeong Bae, Livia Tomasini, Jessica Mariani, Bo Zhou, Tanmoy Roychowdhury, Daniel Franjic, Mihovil Pletikos, Reenal Pattni, Bo-Juen Chen, Elisa Venturini,[...]. Science 2018
107
25

Synaptic, transcriptional and chromatin genes disrupted in autism.
Silvia De Rubeis, Xin He, Arthur P Goldberg, Christopher S Poultney, Kaitlin Samocha, A Erucment Cicek, Yan Kou, Li Liu, Menachem Fromer, Susan Walker,[...]. Nature 2014
25

Excess of rare, inherited truncating mutations in autism.
Niklas Krumm, Tychele N Turner, Carl Baker, Laura Vives, Kiana Mohajeri, Kali Witherspoon, Archana Raja, Bradley P Coe, Holly A Stessman, Zong-Xiao He,[...]. Nat Genet 2015
292
25

Most genetic risk for autism resides with common variation.
Trent Gaugler, Lambertus Klei, Stephan J Sanders, Corneliu A Bodea, Arthur P Goldberg, Ann B Lee, Milind Mahajan, Dina Manaa, Yudi Pawitan, Jennifer Reichert,[...]. Nat Genet 2014
568
25

Paternally inherited cis-regulatory structural variants are associated with autism.
William M Brandler, Danny Antaki, Madhusudan Gujral, Morgan L Kleiber, Joe Whitney, Michelle S Maile, Oanh Hong, Timothy R Chapman, Shirley Tan, Prateek Tandon,[...]. Science 2018
79
25

De novo mutations revealed by whole-exome sequencing are strongly associated with autism.
Stephan J Sanders, Michael T Murtha, Abha R Gupta, John D Murdoch, Melanie J Raubeson, A Jeremy Willsey, A Gulhan Ercan-Sencicek, Nicholas M DiLullo, Neelroop N Parikshak, Jason L Stein,[...]. Nature 2012
25

Large mosaic copy number variations confer autism risk.
Maxwell A Sherman, Rachel E Rodin, Giulio Genovese, Caroline Dias, Alison R Barton, Ronen E Mukamel, Bonnie Berger, Peter J Park, Christopher A Walsh, Po-Ru Loh. Nat Neurosci 2021
5
40

Somatic mutation, genomic variation, and neurological disease.
Annapurna Poduri, Gilad D Evrony, Xuyu Cai, Christopher A Walsh. Science 2013
335
16


Brain Somatic Mutations in Epileptic Disorders.
Hyun Yong Koh, Jeong Ho Lee. Mol Cells 2018
13
16

Clonal Hematopoiesis and Risk of Atherosclerotic Cardiovascular Disease.
Siddhartha Jaiswal, Pradeep Natarajan, Alexander J Silver, Christopher J Gibson, Alexander G Bick, Eugenia Shvartz, Marie McConkey, Namrata Gupta, Stacey Gabriel, Diego Ardissino,[...]. N Engl J Med 2017
843
16

Somatic mutation: The hidden genetics of brain malformations and focal epilepsies.
Zimeng Ye, Lara McQuillan, Annapurna Poduri, Timothy E Green, Naomichi Matsumoto, Heather C Mefford, Ingrid E Scheffer, Samuel F Berkovic, Michael S Hildebrand. Epilepsy Res 2019
18
16

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
16

The mutational constraint spectrum quantified from variation in 141,456 humans.
Konrad J Karczewski, Laurent C Francioli, Grace Tiao, Beryl B Cummings, Jessica Alföldi, Qingbo Wang, Ryan L Collins, Kristen M Laricchia, Andrea Ganna, Daniel P Birnbaum,[...]. Nature 2020
16

Landmarks of human embryonic development inscribed in somatic mutations.
Sara Bizzotto, Yanmei Dou, Javier Ganz, Ryan N Doan, Minseok Kwon, Craig L Bohrson, Sonia N Kim, Taejeong Bae, Alexej Abyzov, Peter J Park,[...]. Science 2021
9
22

Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples.
Kristian Cibulskis, Michael S Lawrence, Scott L Carter, Andrey Sivachenko, David Jaffe, Carrie Sougnez, Stacey Gabriel, Matthew Meyerson, Eric S Lander, Gad Getz. Nat Biotechnol 2013
16

Tumor evolution. High burden and pervasive positive selection of somatic mutations in normal human skin.
Iñigo Martincorena, Amit Roshan, Moritz Gerstung, Peter Ellis, Peter Van Loo, Stuart McLaren, David C Wedge, Anthony Fullam, Ludmil B Alexandrov, Jose M Tubio,[...]. Science 2015
801
16

Clonal hematopoiesis, with and without candidate driver mutations, is common in the elderly.
Florian Zink, Simon N Stacey, Gudmundur L Norddahl, Michael L Frigge, Olafur T Magnusson, Ingileif Jonsdottir, Thorgeir E Thorgeirsson, Asgeir Sigurdsson, Sigurjon A Gudjonsson, Julius Gudmundsson,[...]. Blood 2017
308
16

Inherited causes of clonal haematopoiesis in 97,691 whole genomes.
Alexander G Bick, Joshua S Weinstock, Satish K Nandakumar, Charles P Fulco, Erik L Bao, Seyedeh M Zekavat, Mindy D Szeto, Xiaotian Liao, Matthew J Leventhal, Joseph Nasser,[...]. Nature 2020
84
16

Tobacco smoking and somatic mutations in human bronchial epithelium.
Kenichi Yoshida, Kate H C Gowers, Henry Lee-Six, Deepak P Chandrasekharan, Tim Coorens, Elizabeth F Maughan, Kathryn Beal, Andrew Menzies, Fraser R Millar, Elizabeth Anderson,[...]. Nature 2020
109
16

Somatic mutant clones colonize the human esophagus with age.
Iñigo Martincorena, Joanna C Fowler, Agnieszka Wabik, Andrew R J Lawson, Federico Abascal, Michael W J Hall, Alex Cagan, Kasumi Murai, Krishnaa Mahbubani, Michael R Stratton,[...]. Science 2018
355
16

Clonal hematopoiesis and blood-cancer risk inferred from blood DNA sequence.
Giulio Genovese, Anna K Kähler, Robert E Handsaker, Johan Lindberg, Samuel A Rose, Samuel F Bakhoum, Kimberly Chambert, Eran Mick, Benjamin M Neale, Menachem Fromer,[...]. N Engl J Med 2014
16

Age-related clonal hematopoiesis associated with adverse outcomes.
Siddhartha Jaiswal, Pierre Fontanillas, Jason Flannick, Alisa Manning, Peter V Grauman, Brenton G Mar, R Coleman Lindsley, Craig H Mermel, Noel Burtt, Alejandro Chavez,[...]. N Engl J Med 2014
16

The mutational landscape of normal human endometrial epithelium.
Luiza Moore, Daniel Leongamornlert, Tim H H Coorens, Mathijs A Sanders, Peter Ellis, Stefan C Dentro, Kevin J Dawson, Tim Butler, Raheleh Rahbari, Thomas J Mitchell,[...]. Nature 2020
104
16

Clonal hematopoiesis in human aging and disease.
Siddhartha Jaiswal, Benjamin L Ebert. Science 2019
183
16

Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder.
Elaine T Lim, Mohammed Uddin, Silvia De Rubeis, Yingleong Chan, Anne S Kamumbu, Xiaochang Zhang, Alissa M D'Gama, Sonia N Kim, Robert Sean Hill, Arthur P Goldberg,[...]. Nat Neurosci 2017
118
16

Targeted DNA Sequencing from Autism Spectrum Disorder Brains Implicates Multiple Genetic Mechanisms.
Alissa M D'Gama, Sirisha Pochareddy, Mingfeng Li, Saumya S Jamuar, Rachel E Reiff, Anh-Thu N Lam, Nenad Sestan, Christopher A Walsh. Neuron 2015
84
16

Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
Stephan J Sanders, Xin He, A Jeremy Willsey, A Gulhan Ercan-Sencicek, Kaitlin E Samocha, A Ercument Cicek, Michael T Murtha, Vanessa H Bal, Somer L Bishop, Shan Dong,[...]. Neuron 2015
638
16

Genetic heritability and shared environmental factors among twin pairs with autism.
Joachim Hallmayer, Sue Cleveland, Andrea Torres, Jennifer Phillips, Brianne Cohen, Tiffany Torigoe, Janet Miller, Angie Fedele, Jack Collins, Karen Smith,[...]. Arch Gen Psychiatry 2011
994
16

Recent Advances in Understanding the Genetic Architecture of Autism.
Caroline M Dias, Christopher A Walsh. Annu Rev Genomics Hum Genet 2020
8
25

Single-cell genomics identifies cell type-specific molecular changes in autism.
Dmitry Velmeshev, Lucas Schirmer, Diane Jung, Maximilian Haeussler, Yonatan Perez, Simone Mayer, Aparna Bhaduri, Nitasha Goyal, David H Rowitch, Arnold R Kriegstein. Science 2019
167
16

FOXG1-Dependent Dysregulation of GABA/Glutamate Neuron Differentiation in Autism Spectrum Disorders.
Jessica Mariani, Gianfilippo Coppola, Ping Zhang, Alexej Abyzov, Lauren Provini, Livia Tomasini, Mariangela Amenduni, Anna Szekely, Dean Palejev, Michael Wilson,[...]. Cell 2015
538
16

The Contribution of Mosaic Variants to Autism Spectrum Disorder.
Donald Freed, Jonathan Pevsner. PLoS Genet 2016
57
16

Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA.
Tychele N Turner, Fereydoun Hormozdiari, Michael H Duyzend, Sarah A McClymont, Paul W Hook, Ivan Iossifov, Archana Raja, Carl Baker, Kendra Hoekzema, Holly A Stessman,[...]. Am J Hum Genet 2016
159
16

Using whole-exome sequencing to identify inherited causes of autism.
Timothy W Yu, Maria H Chahrour, Michael E Coulter, Sarn Jiralerspong, Kazuko Okamura-Ikeda, Bulent Ataman, Klaus Schmitz-Abe, David A Harmin, Mazhar Adli, Athar N Malik,[...]. Neuron 2013
268
16

Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism.
F Kyle Satterstrom, Jack A Kosmicki, Jiebiao Wang, Michael S Breen, Silvia De Rubeis, Joon-Yong An, Minshi Peng, Ryan Collins, Jakob Grove, Lambertus Klei,[...]. Cell 2020
419
16

Whole-genome deep-learning analysis identifies contribution of noncoding mutations to autism risk.
Jian Zhou, Christopher Y Park, Chandra L Theesfeld, Aaron K Wong, Yuan Yuan, Claudia Scheckel, John J Fak, Julien Funk, Kevin Yao, Yoko Tajima,[...]. Nat Genet 2019
83
16

Prevalence of Autism Spectrum Disorder Among Children Aged 8 Years - Autism and Developmental Disabilities Monitoring Network, 11 Sites, United States, 2016.
Matthew J Maenner, Kelly A Shaw, Jon Baio, Anita Washington, Mary Patrick, Monica DiRienzo, Deborah L Christensen, Lisa D Wiggins, Sydney Pettygrove, Jennifer G Andrews,[...]. MMWR Surveill Summ 2020
670
16

Patterns and rates of exonic de novo mutations in autism spectrum disorders.
Benjamin M Neale, Yan Kou, Li Liu, Avi Ma'ayan, Kaitlin E Samocha, Aniko Sabo, Chiao-Feng Lin, Christine Stevens, Li-San Wang, Vladimir Makarov,[...]. Nature 2012
16

Patches of disorganization in the neocortex of children with autism.
Rich Stoner, Maggie L Chow, Maureen P Boyle, Susan M Sunkin, Peter R Mouton, Subhojit Roy, Anthony Wynshaw-Boris, Sophia A Colamarino, Ed S Lein, Eric Courchesne. N Engl J Med 2014
388
16

Recessive gene disruptions in autism spectrum disorder.
Ryan N Doan, Elaine T Lim, Silvia De Rubeis, Catalina Betancur, David J Cutler, Andreas G Chiocchetti, Lynne M Overman, Aubrie Soucy, Susanne Goetze, Christine M Freitag,[...]. Nat Genet 2019
37
16

Strong association of de novo copy number mutations with autism.
Jonathan Sebat, B Lakshmi, Dheeraj Malhotra, Jennifer Troge, Christa Lese-Martin, Tom Walsh, Boris Yamrom, Seungtai Yoon, Alex Krasnitz, Jude Kendall,[...]. Science 2007
16

From neural development to cognition: unexpected roles for chromatin.
Jehnna L Ronan, Wei Wu, Gerald R Crabtree. Nat Rev Genet 2013
291
16


Common genetic variants, acting additively, are a major source of risk for autism.
Lambertus Klei, Stephan J Sanders, Michael T Murtha, Vanessa Hus, Jennifer K Lowe, A Jeremy Willsey, Daniel Moreno-De-Luca, Timothy W Yu, Eric Fombonne, Daniel Geschwind,[...]. Mol Autism 2012
256
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.