A citation-based method for searching scientific literature

Youri Timsit, Grégoire Sergeant-Perthuis, Daniel Bennequin. Sci Rep 2021
Times Cited: 7







List of co-cited articles
168 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The structure of the eukaryotic ribosome at 3.0 Å resolution.
Adam Ben-Shem, Nicolas Garreau de Loubresse, Sergey Melnikov, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Science 2011
718
57

Translation: The Universal Structural Core of Life.
Chad R Bernier, Anton S Petrov, Nicholas A Kovacs, Petar I Penev, Loren Dean Williams. Mol Biol Evol 2018
26
42

Root of the Tree: The Significance, Evolution, and Origins of the Ribosome.
Jessica C Bowman, Anton S Petrov, Moran Frenkel-Pinter, Petar I Penev, Loren Dean Williams. Chem Rev 2020
32
42

A new system for naming ribosomal proteins.
Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton,[...]. Curr Opin Struct Biol 2014
322
42

History of the ribosome and the origin of translation.
Anton S Petrov, Burak Gulen, Ashlyn M Norris, Nicholas A Kovacs, Chad R Bernier, Kathryn A Lanier, George E Fox, Stephen C Harvey, Roger M Wartell, Nicholas V Hud,[...]. Proc Natl Acad Sci U S A 2015
109
42

One core, two shells: bacterial and eukaryotic ribosomes.
Sergey Melnikov, Adam Ben-Shem, Nicolas Garreau de Loubresse, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Nat Struct Mol Biol 2012
225
42


Nervous-Like Circuits in the Ribosome Facts, Hypotheses and Perspectives.
Youri Timsit, Daniel Bennequin. Int J Mol Sci 2019
4
75

ECOD: an evolutionary classification of protein domains.
Hua Cheng, R Dustin Schaeffer, Yuxing Liao, Lisa N Kinch, Jimin Pei, Shuoyong Shi, Bong-Hyun Kim, Nick V Grishin. PLoS Comput Biol 2014
151
28

The rapid generation of mutation data matrices from protein sequences.
D T Jones, W R Taylor, J M Thornton. Comput Appl Biosci 1992
28

Circular Permutation Obscures Universality of a Ribosomal Protein.
Nicholas A Kovacs, Petar I Penev, Amitej Venapally, Anton S Petrov, Loren Dean Williams. J Mol Evol 2018
5
40

Revising the Structural Diversity of Ribosomal Proteins Across the Three Domains of Life.
Sergey Melnikov, Kasidet Manakongtreecheep, Dieter Söll. Mol Biol Evol 2018
32
28

Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale.
Odile Lecompte, Raymond Ripp, Jean-Claude Thierry, Dino Moras, Olivier Poch. Nucleic Acids Res 2002
225
28

Ribosomal protein-sequence block structure suggests complex prokaryotic evolution with implications for the origin of eukaryotes.
Prashanth Vishwanath, Paola Favaretto, Hyman Hartman, Scott C Mohr, Temple F Smith. Mol Phylogenet Evol 2004
35
28

Frozen in Time: The History of Proteins.
Nicholas A Kovacs, Anton S Petrov, Kathryn A Lanier, Loren Dean Williams. Mol Biol Evol 2017
36
28


Molecular signatures of ribosomal evolution.
Elijah Roberts, Anurag Sethi, Jonathan Montoya, Carl R Woese, Zaida Luthey-Schulten. Proc Natl Acad Sci U S A 2008
74
28


The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.
N Ban, P Nissen, J Hansen, P B Moore, T A Steitz. Science 2000
28

ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules.
Haim Ashkenazy, Shiran Abadi, Eric Martz, Ofer Chay, Itay Mayrose, Tal Pupko, Nir Ben-Tal. Nucleic Acids Res 2016
989
28

Supersized Ribosomal RNA Expansion Segments in Asgard Archaea.
Petar I Penev, Sara Fakhretaha-Aval, Vaishnavi J Patel, Jamie J Cannone, Robin R Gutell, Anton S Petrov, Loren Dean Williams, Jennifer B Glass. Genome Biol Evol 2020
6
33

RiboVision suite for visualization and analysis of ribosomes.
Chad R Bernier, Anton S Petrov, Chris C Waterbury, James Jett, Fengbo Li, Larry E Freil, Xiao Xiong, Lan Wang, Blacki L R Migliozzi, Eli Hershkovits,[...]. Faraday Discuss 2014
59
28

Tightly-orchestrated rearrangements govern catalytic center assembly of the ribosome.
Yi Zhou, Sharmishtha Musalgaonkar, Arlen W Johnson, David W Taylor. Nat Commun 2019
23
28

Ribosome biogenesis in the yeast Saccharomyces cerevisiae.
John L Woolford, Susan J Baserga. Genetics 2013
431
28

Cryo-EM structures of Arx1 and maturation factors Rei1 and Jjj1 bound to the 60S ribosomal subunit.
Basil J Greber, Daniel Boehringer, Christian Montellese, Nenad Ban. Nat Struct Mol Biol 2012
72
28

Atomic structures of the eukaryotic ribosome.
Sebastian Klinge, Felix Voigts-Hoffmann, Marc Leibundgut, Nenad Ban. Trends Biochem Sci 2012
102
28

The cytosolic J-protein, Jjj1, and Rei1 function in the removal of the pre-60 S subunit factor Arx1.
Alison E Meyer, Lindsey A Hoover, Elizabeth A Craig. J Biol Chem 2010
41
28



Insertion of the Biogenesis Factor Rei1 Probes the Ribosomal Tunnel during 60S Maturation.
Basil Johannes Greber, Stefan Gerhardy, Alexander Leitner, Marc Leibundgut, Michèle Salem, Daniel Boehringer, Nicolas Leulliot, Ruedi Aebersold, Vikram Govind Panse, Nenad Ban. Cell 2016
64
28

Structural insights into assembly of the ribosomal nascent polypeptide exit tunnel.
Daniel M Wilson, Yu Li, Amber LaPeruta, Michael Gamalinda, Ning Gao, John L Woolford. Nat Commun 2020
5
40

The GTPase Nog1 co-ordinates the assembly, maturation and quality control of distant ribosomal functional centers.
Purnima Klingauf-Nerurkar, Ludovic C Gillet, Daniela Portugal-Calisto, Michaela Oborská-Oplová, Martin Jäger, Olga T Schubert, Agnese Pisano, Cohue Peña, Sanjana Rao, Martin Altvater,[...]. Elife 2020
15
28

Defining the pathway of cytoplasmic maturation of the 60S ribosomal subunit.
Kai-Yin Lo, Zhihua Li, Cyril Bussiere, Stefan Bresson, Edward M Marcotte, Arlen W Johnson. Mol Cell 2010
132
28


Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
28


The role of disordered ribosomal protein extensions in the early steps of eubacterial 50 S ribosomal subunit assembly.
Youri Timsit, Zahir Acosta, Frédéric Allemand, Claude Chiaruttini, Mathias Springer. Int J Mol Sci 2009
32
28

Promiscuous behaviour of archaeal ribosomal proteins: implications for eukaryotic ribosome evolution.
Jean-Paul Armache, Andreas M Anger, Viter Márquez, Sibylle Franckenberg, Thomas Fröhlich, Elizabeth Villa, Otto Berninghausen, Michael Thomm, Georg J Arnold, Roland Beckmann,[...]. Nucleic Acids Res 2013
44
28

Ancient machinery embedded in the contemporary ribosome.
Matthew J Belousoff, Chen Davidovich, Ella Zimmerman, Yaron Caspi, Itai Wekselman, Lin Rozenszajn, Tal Shapira, Ofir Sade-Falk, Leena Taha, Anat Bashan,[...]. Biochem Soc Trans 2010
33
28

Photoreceptors Take Charge: Emerging Principles for Light Sensing.
Tilman Kottke, Aihua Xie, Delmar S Larsen, Wouter D Hoff. Annu Rev Biophys 2018
29
28

Hydrogen bond dynamics in the active site of photoactive yellow protein.
Paul A Sigala, Mark A Tsuchida, Daniel Herschlag. Proc Natl Acad Sci U S A 2009
55
28

Signal Percolation within a Bacterial Community.
Joseph W Larkin, Xiaoling Zhai, Kaito Kikuchi, Samuel E Redford, Arthur Prindle, Jintao Liu, Sacha Greenfield, Aleksandra M Walczak, Jordi Garcia-Ojalvo, Andrew Mugler,[...]. Cell Syst 2018
32
28

Channelrhodopsin-1: a light-gated proton channel in green algae.
Georg Nagel, Doris Ollig, Markus Fuhrmann, Suneel Kateriya, Anna Maria Musti, Ernst Bamberg, Peter Hegemann. Science 2002
603
28

PAS domains: internal sensors of oxygen, redox potential, and light.
B L Taylor, I B Zhulin. Microbiol Mol Biol Rev 1999
28



Photosensory behavior in procaryotes.
D P Häder. Microbiol Rev 1987
61
28

Bacterial chemotaxis: information processing, thermodynamics, and behavior.
Gabriele Micali, Robert G Endres. Curr Opin Microbiol 2016
40
28

Algal sensory photoreceptors.
Peter Hegemann. Annu Rev Plant Biol 2008
163
28

A rhodopsin-guanylyl cyclase gene fusion functions in visual perception in a fungus.
Gabriela M Avelar, Robert I Schumacher, Paulo A Zaini, Guy Leonard, Thomas A Richards, Suely L Gomes. Curr Biol 2014
75
28


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.