A citation-based method for searching scientific literature

Olga Kyrchanova, Pavel Georgiev. Int J Mol Sci 2021
Times Cited: 6







List of co-cited articles
54 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander,[...]. Cell 2014
66

Functional role of dimerization and CP190 interacting domains of CTCF protein in Drosophila melanogaster.
Artem Bonchuk, Oksana Maksimenko, Olga Kyrchanova, Tatyana Ivlieva, Vladic Mogila, Girish Deshpande, Daniel Wolle, Paul Schedl, Pavel Georgiev. BMC Biol 2015
42
50

Two new insulator proteins, Pita and ZIPIC, target CP190 to chromatin.
Oksana Maksimenko, Marek Bartkuhn, Viacheslav Stakhov, Martin Herold, Nickolay Zolotarev, Theresa Jox, Melanie K Buxa, Ramona Kirsch, Artem Bonchuk, Anna Fedotova,[...]. Genome Res 2015
63
50

Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
50

Three-dimensional folding and functional organization principles of the Drosophila genome.
Tom Sexton, Eitan Yaffe, Ephraim Kenigsberg, Frédéric Bantignies, Benjamin Leblanc, Michael Hoichman, Hugues Parrinello, Amos Tanay, Giacomo Cavalli. Cell 2012
50

Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture.
Caelin Cubeñas-Potts, M Jordan Rowley, Xiaowen Lyu, Ge Li, Elissa P Lei, Victor G Corces. Nucleic Acids Res 2017
67
50

Developmental enhancers and chromosome topology.
Eileen E M Furlong, Michael Levine. Science 2018
172
50


The boundary paradox in the Bithorax complex.
Olga Kyrchanova, Vladic Mogila, Daniel Wolle, Jose Paolo Magbanua, Robert White, Pavel Georgiev, Paul Schedl. Mech Dev 2015
28
33

Functional dissection of the developmentally restricted BEN domain chromatin boundary factor Insensitive.
Anna Fedotova, Chaevia Clendinen, Artem Bonchuk, Vladic Mogila, Tsutomu Aoki, Pavel Georgiev, Paul Schedl. Epigenetics Chromatin 2019
7
33

CTCF genomic binding sites in Drosophila and the organisation of the bithorax complex.
Eimear E Holohan, Camilla Kwong, Boris Adryan, Marek Bartkuhn, Martin Herold, Rainer Renkawitz, Steven Russell, Robert White. PLoS Genet 2007
138
33

Architectural protein Pita cooperates with dCTCF in organization of functional boundaries in Bithorax complex.
Olga Kyrchanova, Nikolay Zolotarev, Vladic Mogila, Oksana Maksimenko, Paul Schedl, Pavel Georgiev. Development 2017
20
33

Genome wide ChIP-chip analyses reveal important roles for CTCF in Drosophila genome organization.
Sheryl T Smith, Priyankara Wickramasinghe, Andrew Olson, Dmitri Loukinov, Lan Lin, Joy Deng, Yanping Xiong, John Rux, Ravi Sachidanandam, Hao Sun,[...]. Dev Biol 2009
55
33

A cis-regulatory map of the Drosophila genome.
Nicolas Nègre, Christopher D Brown, Lijia Ma, Christopher Aaron Bristow, Steven W Miller, Ulrich Wagner, Pouya Kheradpour, Matthew L Eaton, Paul Loriaux, Rachel Sealfon,[...]. Nature 2011
353
33

The open for business model of the bithorax complex in Drosophila.
Robert K Maeda, François Karch. Chromosoma 2015
40
33

Selective interactions of boundaries with upstream region of Abd-B promoter in Drosophila bithorax complex and role of dCTCF in this process.
Olga Kyrchanova, Tatiana Ivlieva, Stepan Toshchakov, Alexander Parshikov, Oksana Maksimenko, Pavel Georgiev. Nucleic Acids Res 2011
33
33

Functional Dissection of the Blocking and Bypass Activities of the Fab-8 Boundary in the Drosophila Bithorax Complex.
Olga Kyrchanova, Vladic Mogila, Daniel Wolle, Girish Deshpande, Alexander Parshikov, Fabienne Cléard, Francois Karch, Paul Schedl, Pavel Georgiev. PLoS Genet 2016
24
33

BEN-solo factors partition active chromatin to ensure proper gene activation in Drosophila.
Malin Ueberschär, Huazhen Wang, Chun Zhang, Shu Kondo, Tsutomu Aoki, Paul Schedl, Eric C Lai, Jiayu Wen, Qi Dai. Nat Commun 2019
3
66

An optimized transgenesis system for Drosophila using germ-line-specific phiC31 integrases.
Johannes Bischof, Robert K Maeda, Monika Hediger, François Karch, Konrad Basler. Proc Natl Acad Sci U S A 2007
33

Boundaries mediate long-distance interactions between enhancers and promoters in the Drosophila Bithorax complex.
Nikolay Postika, Mario Metzler, Markus Affolter, Martin Müller, Paul Schedl, Pavel Georgiev, Olga Kyrchanova. PLoS Genet 2018
14
33

CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription.
Zhonghui Tang, Oscar Junhong Luo, Xingwang Li, Meizhen Zheng, Jacqueline Jufen Zhu, Przemyslaw Szalaj, Pawel Trzaskoma, Adriana Magalska, Jakub Wlodarczyk, Blazej Ruszczycki,[...]. Cell 2015
482
33


Spatial partitioning of the regulatory landscape of the X-inactivation centre.
Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat,[...]. Nature 2012
33

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
33

Formation of Chromosomal Domains by Loop Extrusion.
Geoffrey Fudenberg, Maxim Imakaev, Carolyn Lu, Anton Goloborodko, Nezar Abdennur, Leonid A Mirny. Cell Rep 2016
721
33

Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes.
Adrian L Sanborn, Suhas S P Rao, Su-Chen Huang, Neva C Durand, Miriam H Huntley, Andrew I Jewett, Ivan D Bochkov, Dharmaraj Chinnappan, Ashok Cutkosky, Jian Li,[...]. Proc Natl Acad Sci U S A 2015
766
33

Single-cell Hi-C for genome-wide detection of chromatin interactions that occur simultaneously in a single cell.
Takashi Nagano, Yaniv Lubling, Eitan Yaffe, Steven W Wingett, Wendy Dean, Amos Tanay, Peter Fraser. Nat Protoc 2015
81
33

ARID1A spatially partitions interphase chromosomes.
Shuai Wu, Nail Fatkhutdinov, Leah Rosin, Jennifer M Luppino, Osamu Iwasaki, Hideki Tanizawa, Hsin-Yao Tang, Andrew V Kossenkov, Alessandro Gardini, Ken-Ichi Noma,[...]. Sci Adv 2019
19
33

The structural basis for cohesin-CTCF-anchored loops.
Yan Li, Judith H I Haarhuis, Ángela Sedeño Cacciatore, Roel Oldenkamp, Marjon S van Ruiten, Laureen Willems, Hans Teunissen, Kyle W Muir, Elzo de Wit, Benjamin D Rowland,[...]. Nature 2020
77
33

Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.
Elphège P Nora, Anton Goloborodko, Anne-Laure Valton, Johan H Gibcus, Alec Uebersohn, Nezar Abdennur, Job Dekker, Leonid A Mirny, Benoit G Bruneau. Cell 2017
626
33

Evolutionarily Conserved Principles Predict 3D Chromatin Organization.
M Jordan Rowley, Michael H Nichols, Xiaowen Lyu, Masami Ando-Kuri, I Sarahi M Rivera, Karen Hermetz, Ping Wang, Yijun Ruan, Victor G Corces. Mol Cell 2017
225
33

CTCF-mediated topological boundaries during development foster appropriate gene regulation.
Varun Narendra, Milica Bulajić, Job Dekker, Esteban O Mazzoni, Danny Reinberg. Genes Dev 2016
81
33

Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.
Gordana Wutz, Csilla Várnai, Kota Nagasaka, David A Cisneros, Roman R Stocsits, Wen Tang, Stefan Schoenfelder, Gregor Jessberger, Matthias Muhar, M Julius Hossain,[...]. EMBO J 2017
271
33


Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains.
Sergey V Ulianov, Ekaterina E Khrameeva, Alexey A Gavrilov, Ilya M Flyamer, Pavel Kos, Elena A Mikhaleva, Aleksey A Penin, Maria D Logacheva, Maxim V Imakaev, Alexander Chertovich,[...]. Genome Res 2016
175
33

CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation.
Varun Narendra, Pedro P Rocha, Disi An, Ramya Raviram, Jane A Skok, Esteban O Mazzoni, Danny Reinberg. Science 2015
306
33

TADs and Their Borders: Free Movement or Building a Wall?
Li-Hsin Chang, Sourav Ghosh, Daan Noordermeer. J Mol Biol 2020
27
33


The insulator functions of the Drosophila polydactyl C2H2 zinc finger protein CTCF: Necessity versus sufficiency.
Olga Kyrchanova, Oksana Maksimenko, Airat Ibragimov, Vladimir Sokolov, Nikolay Postika, Maria Lukyanova, Paul Schedl, Pavel Georgiev. Sci Adv 2020
13
33

Chromatin binding of Gcn5 in Drosophila is largely mediated by CP190.
Tamer Ali, Marcus Krüger, Sabin Bhuju, Michael Jarek, Marek Bartkuhn, Rainer Renkawitz. Nucleic Acids Res 2017
10
33

Coordinated control of dCTCF and gypsy chromatin insulators in Drosophila.
Tatiana I Gerasimova, Elissa P Lei, Ashley M Bushey, Victor G Corces. Mol Cell 2007
104
33



A functional insulator screen identifies NURF and dREAM components to be required for enhancer-blocking.
Dorte Bohla, Martin Herold, Imke Panzer, Melanie K Buxa, Tamer Ali, Jeroen Demmers, Marcus Krüger, Maren Scharfe, Michael Jarek, Marek Bartkuhn,[...]. PLoS One 2014
26
33

Mechanism and functional role of the interaction between CP190 and the architectural protein Pita in Drosophila melanogaster.
Marat Sabirov, Olga Kyrchanova, Galina V Pokholkova, Artem Bonchuk, Natalia Klimenko, Elena Belova, Igor F Zhimulev, Oksana Maksimenko, Pavel Georgiev. Epigenetics Chromatin 2021
2
100

Architectural proteins Pita, Zw5,and ZIPIC contain homodimerization domain and support specific long-range interactions in Drosophila.
Nikolay Zolotarev, Anna Fedotova, Olga Kyrchanova, Artem Bonchuk, Aleksey A Penin, Andrey S Lando, Irina A Eliseeva, Ivan V Kulakovskiy, Oksana Maksimenko, Pavel Georgiev. Nucleic Acids Res 2016
33
33

Chromatin immunoprecipitation indirect peaks highlight long-range interactions of insulator proteins and Pol II pausing.
Jun Liang, Laurent Lacroix, Adrien Gamot, Suresh Cuddapah, Sophie Queille, Priscillia Lhoumaud, Pierre Lepetit, Pascal G P Martin, Jutta Vogelmann, Franck Court,[...]. Mol Cell 2014
60
33

Chromatin insulator factors involved in long-range DNA interactions and their role in the folding of the Drosophila genome.
Jutta Vogelmann, Antoine Le Gall, Stephanie Dejardin, Frederic Allemand, Adrien Gamot, Gilles Labesse, Olivier Cuvier, Nicolas Nègre, Martin Cohen-Gonsaud, Emmanuel Margeat,[...]. PLoS Genet 2014
60
33

Proximity-dependent biotin labelling reveals CP190 as an EcR/Usp molecular partner.
Marina Yu Mazina, Rustam H Ziganshin, Mikhail D Magnitov, Anton K Golovnin, Nadezhda E Vorobyeva. Sci Rep 2020
9
33

Ectopically tethered CP190 induces large-scale chromatin decondensation.
Sajad H Ahanger, Katharina Günther, Oliver Weth, Marek Bartkuhn, Ramesh R Bhonde, Yogesh S Shouche, Rainer Renkawitz. Sci Rep 2014
14
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.