Suyang Zhang, Shintaro Aibara, Seychelle M Vos, Dmitry E Agafonov, Reinhard Lührmann, Patrick Cramer. Science 2021
Times Cited: 34
Times Cited: 34
Times Cited
Times Co-cited
Similarity
U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation.
Daisuke Kaida, Michael G Berg, Ihab Younis, Mumtaz Kasim, Larry N Singh, Lili Wan, Gideon Dreyfuss. Nature 2010
Daisuke Kaida, Michael G Berg, Ihab Younis, Mumtaz Kasim, Larry N Singh, Lili Wan, Gideon Dreyfuss. Nature 2010
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Structure of paused transcription complex Pol II-DSIF-NELF.
Seychelle M Vos, Lucas Farnung, Henning Urlaub, Patrick Cramer. Nature 2018
Seychelle M Vos, Lucas Farnung, Henning Urlaub, Patrick Cramer. Nature 2018
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Prespliceosome structure provides insights into spliceosome assembly and regulation.
Clemens Plaschka, Pei-Chun Lin, Clément Charenton, Kiyoshi Nagai. Nature 2018
Clemens Plaschka, Pei-Chun Lin, Clément Charenton, Kiyoshi Nagai. Nature 2018
20
Crystal structure of human U1 snRNP, a small nuclear ribonucleoprotein particle, reveals the mechanism of 5' splice site recognition.
Yasushi Kondo, Chris Oubridge, Anne-Marie M van Roon, Kiyoshi Nagai. Elife 2015
Yasushi Kondo, Chris Oubridge, Anne-Marie M van Roon, Kiyoshi Nagai. Elife 2015
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Splicing of Nascent RNA Coincides with Intron Exit from RNA Polymerase II.
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The spliceosome: design principles of a dynamic RNP machine.
Markus C Wahl, Cindy L Will, Reinhard Lührmann. Cell 2009
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Splicing Kinetics and Coordination Revealed by Direct Nascent RNA Sequencing through Nanopores.
Heather L Drexler, Karine Choquet, L Stirling Churchman. Mol Cell 2020
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Splicing and transcription touch base: co-transcriptional spliceosome assembly and function.
Lydia Herzel, Diana S M Ottoz, Tara Alpert, Karla M Neugebauer. Nat Rev Mol Cell Biol 2017
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Structure of activated transcription complex Pol II-DSIF-PAF-SPT6.
Seychelle M Vos, Lucas Farnung, Marc Boehning, Christoph Wigge, Andreas Linden, Henning Urlaub, Patrick Cramer. Nature 2018
Seychelle M Vos, Lucas Farnung, Marc Boehning, Christoph Wigge, Andreas Linden, Henning Urlaub, Patrick Cramer. Nature 2018
20
Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp.
Carrie Bernecky, Jürgen M Plitzko, Patrick Cramer. Nat Struct Mol Biol 2017
Carrie Bernecky, Jürgen M Plitzko, Patrick Cramer. Nat Struct Mol Biol 2017
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Roles and mechanisms of alternative splicing in cancer - implications for care.
Sophie C Bonnal, Irene López-Oreja, Juan Valcárcel. Nat Rev Clin Oncol 2020
Sophie C Bonnal, Irene López-Oreja, Juan Valcárcel. Nat Rev Clin Oncol 2020
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U1 snRNP determines mRNA length and regulates isoform expression.
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Promoter directionality is controlled by U1 snRNP and polyadenylation signals.
Albert E Almada, Xuebing Wu, Andrea J Kriz, Christopher B Burge, Phillip A Sharp. Nature 2013
Albert E Almada, Xuebing Wu, Andrea J Kriz, Christopher B Burge, Phillip A Sharp. Nature 2013
17
Spliceosome structure and function.
Cindy L Will, Reinhard Lührmann. Cold Spring Harb Perspect Biol 2011
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Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals.
Gene Yeo, Christopher B Burge. J Comput Biol 2004
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RNA Splicing by the Spliceosome.
Max E Wilkinson, Clément Charenton, Kiyoshi Nagai. Annu Rev Biochem 2020
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Alternative isoform regulation in human tissue transcriptomes.
Eric T Wang, Rickard Sandberg, Shujun Luo, Irina Khrebtukova, Lu Zhang, Christine Mayr, Stephen F Kingsmore, Gary P Schroth, Christopher B Burge. Nature 2008
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Pick one, but be quick: 5' splice sites and the problems of too many choices.
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STAR: ultrafast universal RNA-seq aligner.
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14
Integrator is a genome-wide attenuator of non-productive transcription.
Søren Lykke-Andersen, Kristina Žumer, Ewa Šmidová Molska, Jérôme O Rouvière, Guifen Wu, Carina Demel, Björn Schwalb, Manfred Schmid, Patrick Cramer, Torben Heick Jensen. Mol Cell 2021
Søren Lykke-Andersen, Kristina Žumer, Ewa Šmidová Molska, Jérôme O Rouvière, Guifen Wu, Carina Demel, Björn Schwalb, Manfred Schmid, Patrick Cramer, Torben Heick Jensen. Mol Cell 2021
14
A unified mechanism for intron and exon definition and back-splicing.
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14
Alternative Splicing Regulatory Networks: Functions, Mechanisms, and Evolution.
Jernej Ule, Benjamin J Blencowe. Mol Cell 2019
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Alternative RNA structures formed during transcription depend on elongation rate and modify RNA processing.
Tassa Saldi, Kent Riemondy, Benjamin Erickson, David L Bentley. Mol Cell 2021
Tassa Saldi, Kent Riemondy, Benjamin Erickson, David L Bentley. Mol Cell 2021
20
Exon and intron definition in pre-mRNA splicing.
Laura De Conti, Marco Baralle, Emanuele Buratti. Wiley Interdiscip Rev RNA 2013
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14
Mammalian NET-Seq Reveals Genome-wide Nascent Transcription Coupled to RNA Processing.
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14
Splice site selection, rate of splicing, and alternative splicing on nascent transcripts.
A L Beyer, Y N Osheim. Genes Dev 1988
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14
Structural Basis of Nuclear pre-mRNA Splicing: Lessons from Yeast.
Clemens Plaschka, Andrew J Newman, Kiyoshi Nagai. Cold Spring Harb Perspect Biol 2019
Clemens Plaschka, Andrew J Newman, Kiyoshi Nagai. Cold Spring Harb Perspect Biol 2019
14
Structural Insights into Nuclear pre-mRNA Splicing in Higher Eukaryotes.
Berthold Kastner, Cindy L Will, Holger Stark, Reinhard Lührmann. Cold Spring Harb Perspect Biol 2019
Berthold Kastner, Cindy L Will, Holger Stark, Reinhard Lührmann. Cold Spring Harb Perspect Biol 2019
14
POINT technology illuminates the processing of polymerase-associated intact nascent transcripts.
Rui Sousa-Luís, Gwendal Dujardin, Inna Zukher, Hiroshi Kimura, Carika Weldon, Maria Carmo-Fonseca, Nick J Proudfoot, Takayuki Nojima. Mol Cell 2021
Rui Sousa-Luís, Gwendal Dujardin, Inna Zukher, Hiroshi Kimura, Carika Weldon, Maria Carmo-Fonseca, Nick J Proudfoot, Takayuki Nojima. Mol Cell 2021
22
Stem-loop 4 of U1 snRNA is essential for splicing and interacts with the U2 snRNP-specific SF3A1 protein during spliceosome assembly.
Shalini Sharma, Somsakul Pop Wongpalee, Ajay Vashisht, James A Wohlschlegel, Douglas L Black. Genes Dev 2014
Shalini Sharma, Somsakul Pop Wongpalee, Ajay Vashisht, James A Wohlschlegel, Douglas L Black. Genes Dev 2014
12
Crystal structure of human spliceosomal U1 snRNP at 5.5 A resolution.
Daniel A Pomeranz Krummel, Chris Oubridge, Adelaine K W Leung, Jade Li, Kiyoshi Nagai. Nature 2009
Daniel A Pomeranz Krummel, Chris Oubridge, Adelaine K W Leung, Jade Li, Kiyoshi Nagai. Nature 2009
11
U1 snRNP telescripting regulates a size-function-stratified human genome.
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11
CryoEM structure of Saccharomyces cerevisiae U1 snRNP offers insight into alternative splicing.
Xueni Li, Shiheng Liu, Jiansen Jiang, Lingdi Zhang, Sara Espinosa, Ryan C Hill, Kirk C Hansen, Z Hong Zhou, Rui Zhao. Nat Commun 2017
Xueni Li, Shiheng Liu, Jiansen Jiang, Lingdi Zhang, Sara Espinosa, Ryan C Hill, Kirk C Hansen, Z Hong Zhou, Rui Zhao. Nat Commun 2017
11
Structural basis of a small molecule targeting RNA for a specific splicing correction.
Sébastien Campagne, Sarah Boigner, Simon Rüdisser, Ahmed Moursy, Laurent Gillioz, Anna Knörlein, Jonathan Hall, Hasane Ratni, Antoine Cléry, Frédéric H-T Allain. Nat Chem Biol 2019
Sébastien Campagne, Sarah Boigner, Simon Rüdisser, Ahmed Moursy, Laurent Gillioz, Anna Knörlein, Jonathan Hall, Hasane Ratni, Antoine Cléry, Frédéric H-T Allain. Nat Chem Biol 2019
11
Recognition of atypical 5' splice sites by shifted base-pairing to U1 snRNA.
Xavier Roca, Adrian R Krainer. Nat Struct Mol Biol 2009
Xavier Roca, Adrian R Krainer. Nat Struct Mol Biol 2009
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Nuclear speckles: molecular organization, biological function and role in disease.
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11
A computational analysis of sequence features involved in recognition of short introns.
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11
Post-transcriptional spliceosomes are retained in nuclear speckles until splicing completion.
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Cyrille Girard, Cindy L Will, Jianhe Peng, Evgeny M Makarov, Berthold Kastner, Ira Lemm, Henning Urlaub, Klaus Hartmuth, Reinhard Lührmann. Nat Commun 2012
11
A Complex of U1 snRNP with Cleavage and Polyadenylation Factors Controls Telescripting, Regulating mRNA Transcription in Human Cells.
Byung Ran So, Chao Di, Zhiqiang Cai, Christopher C Venters, Jiannan Guo, Jung-Min Oh, Chie Arai, Gideon Dreyfuss. Mol Cell 2019
Byung Ran So, Chao Di, Zhiqiang Cai, Christopher C Venters, Jiannan Guo, Jung-Min Oh, Chie Arai, Gideon Dreyfuss. Mol Cell 2019
11
A Two-Layered Targeting Mechanism Underlies Nuclear RNA Sorting by the Human Exosome.
Guifen Wu, Manfred Schmid, Leonor Rib, Patrik Polak, Nicola Meola, Albin Sandelin, Torben Heick Jensen. Cell Rep 2020
Guifen Wu, Manfred Schmid, Leonor Rib, Patrik Polak, Nicola Meola, Albin Sandelin, Torben Heick Jensen. Cell Rep 2020
16
Identification of a Nuclear Exosome Decay Pathway for Processed Transcripts.
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11
Integrator, a multiprotein mediator of small nuclear RNA processing, associates with the C-terminal repeat of RNA polymerase II.
David Baillat, Mohamed-Ali Hakimi, Anders M Näär, Ali Shilatifard, Neil Cooch, Ramin Shiekhattar. Cell 2005
David Baillat, Mohamed-Ali Hakimi, Anders M Näär, Ali Shilatifard, Neil Cooch, Ramin Shiekhattar. Cell 2005
11
Molecular Basis of Transcription-Coupled Pre-mRNA Capping.
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Fuensanta W Martinez-Rucobo, Rebecca Kohler, Michiel van de Waterbeemd, Albert J R Heck, Matthias Hemann, Franz Herzog, Holger Stark, Patrick Cramer. Mol Cell 2015
11
Deciphering the splicing code.
Yoseph Barash, John A Calarco, Weijun Gao, Qun Pan, Xinchen Wang, Ofer Shai, Benjamin J Blencowe, Brendan J Frey. Nature 2010
Yoseph Barash, John A Calarco, Weijun Gao, Qun Pan, Xinchen Wang, Ofer Shai, Benjamin J Blencowe, Brendan J Frey. Nature 2010
11
Context-dependent control of alternative splicing by RNA-binding proteins.
Xiang-Dong Fu, Manuel Ares. Nat Rev Genet 2014
Xiang-Dong Fu, Manuel Ares. Nat Rev Genet 2014
11
Widespread intra-dependencies in the removal of introns from human transcripts.
Seong Won Kim, Allison J Taggart, Claire Heintzelman, Kamil J Cygan, Caitlin G Hull, Jing Wang, Barsha Shrestha, William G Fairbrother. Nucleic Acids Res 2017
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Cross-intron bridging interactions in the yeast commitment complex are conserved in mammals.
N Abovich, M Rosbash. Cell 1997
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11
11
Structure of complete Pol II-DSIF-PAF-SPT6 transcription complex reveals RTF1 allosteric activation.
Seychelle M Vos, Lucas Farnung, Andreas Linden, Henning Urlaub, Patrick Cramer. Nat Struct Mol Biol 2020
Seychelle M Vos, Lucas Farnung, Andreas Linden, Henning Urlaub, Patrick Cramer. Nat Struct Mol Biol 2020
11
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