A citation-based method for searching scientific literature

Benjamin D Weger, Cédric Gobet, Fabrice P A David, Florian Atger, Eva Martin, Nicholas E Phillips, Aline Charpagne, Meltem Weger, Felix Naef, Frédéric Gachon. Proc Natl Acad Sci U S A 2021
Times Cited: 26







List of co-cited articles
207 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Time of feeding and the intrinsic circadian clock drive rhythms in hepatic gene expression.
Christopher Vollmers, Shubhroz Gill, Luciano DiTacchio, Sandhya R Pulivarthy, Hiep D Le, Satchidananda Panda. Proc Natl Acad Sci U S A 2009
458
34

Circadian and feeding rhythms differentially affect rhythmic mRNA transcription and translation in mouse liver.
Florian Atger, Cédric Gobet, Julien Marquis, Eva Martin, Jingkui Wang, Benjamin Weger, Grégory Lefebvre, Patrick Descombes, Felix Naef, Frédéric Gachon. Proc Natl Acad Sci U S A 2015
131
34


Rhythmic Food Intake Drives Rhythmic Gene Expression More Potently than the Hepatic Circadian Clock in Mice.
Ben J Greenwell, Alexandra J Trott, Joshua R Beytebiere, Shanny Pao, Alexander Bosley, Erin Beach, Patrick Finegan, Christopher Hernandez, Jerome S Menet. Cell Rep 2019
65
30

MetaCycle: an integrated R package to evaluate periodicity in large scale data.
Gang Wu, Ron C Anafi, Michael E Hughes, Karl Kornacker, John B Hogenesch. Bioinformatics 2016
199
26

A circadian gene expression atlas in mammals: implications for biology and medicine.
Ray Zhang, Nicholas F Lahens, Heather I Ballance, Michael E Hughes, John B Hogenesch. Proc Natl Acad Sci U S A 2014
26

Time-restricted feeding without reducing caloric intake prevents metabolic diseases in mice fed a high-fat diet.
Megumi Hatori, Christopher Vollmers, Amir Zarrinpar, Luciano DiTacchio, Eric A Bushong, Shubhroz Gill, Mathias Leblanc, Amandine Chaix, Matthew Joens, James A J Fitzpatrick,[...]. Cell Metab 2012
26

Defining the Independence of the Liver Circadian Clock.
Kevin B Koronowski, Kenichiro Kinouchi, Patrick-Simon Welz, Jacob G Smith, Valentina M Zinna, Jiejun Shi, Muntaha Samad, Siwei Chen, Christophe N Magnan, Jason M Kinchen,[...]. Cell 2019
121
23

Reprogramming of the circadian clock by nutritional challenge.
Kristin L Eckel-Mahan, Vishal R Patel, Sara de Mateo, Ricardo Orozco-Solis, Nicholas J Ceglia, Saurabh Sahar, Sherry A Dilag-Penilla, Kenneth A Dyar, Pierre Baldi, Paolo Sassone-Corsi. Cell 2013
394
23


Transcriptional architecture and chromatin landscape of the core circadian clock in mammals.
Nobuya Koike, Seung-Hee Yoo, Hung-Chung Huang, Vivek Kumar, Choogon Lee, Tae-Kyung Kim, Joseph S Takahashi. Science 2012
863
23

Guidelines for Genome-Scale Analysis of Biological Rhythms.
Michael E Hughes, Katherine C Abruzzi, Ravi Allada, Ron Anafi, Alaaddin Bulak Arpat, Gad Asher, Pierre Baldi, Charissa de Bekker, Deborah Bell-Pedersen, Justin Blau,[...]. J Biol Rhythms 2017
112
19

The hepatocyte clock and feeding control chronophysiology of multiple liver cell types.
Dongyin Guan, Ying Xiong, Trang Minh Trinh, Yang Xiao, Wenxiang Hu, Chunjie Jiang, Pieterjan Dierickx, Cholsoon Jang, Joshua D Rabinowitz, Mitchell A Lazar. Science 2020
47
19


clusterProfiler: an R package for comparing biological themes among gene clusters.
Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. OMICS 2012
19

Harmonics of circadian gene transcription in mammals.
Michael E Hughes, Luciano DiTacchio, Kevin R Hayes, Christopher Vollmers, S Pulivarthy, Julie E Baggs, Satchidananda Panda, John B Hogenesch. PLoS Genet 2009
451
19

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
19

Insulin/IGF-1 Drives PERIOD Synthesis to Entrain Circadian Rhythms with Feeding Time.
Priya Crosby, Ryan Hamnett, Marrit Putker, Nathaniel P Hoyle, Martin Reed, Carolyn J Karam, Elizabeth S Maywood, Alessandra Stangherlin, Johanna E Chesham, Edward A Hayter,[...]. Cell 2019
121
19

Circadian time signatures of fitness and disease.
Joseph Bass, Mitchell A Lazar. Science 2016
289
19

High-fat diet disrupts behavioral and molecular circadian rhythms in mice.
Akira Kohsaka, Aaron D Laposky, Kathryn Moynihan Ramsey, Carmela Estrada, Corinne Joshu, Yumiko Kobayashi, Fred W Turek, Joseph Bass. Cell Metab 2007
940
19

Physiological significance of a peripheral tissue circadian clock.
Katja A Lamia, Kai-Florian Storch, Charles J Weitz. Proc Natl Acad Sci U S A 2008
711
15

Differential rhythmicity: detecting altered rhythmicity in biological data.
Paul F Thaben, Pål O Westermark. Bioinformatics 2016
44
15

Detecting rhythms in time series with RAIN.
Paul F Thaben, Pål O Westermark. J Biol Rhythms 2014
169
15

Distinct Circadian Signatures in Liver and Gut Clocks Revealed by Ketogenic Diet.
Paola Tognini, Mari Murakami, Yu Liu, Kristin L Eckel-Mahan, John C Newman, Eric Verdin, Pierre Baldi, Paolo Sassone-Corsi. Cell Metab 2017
95
15

Cistromic Reprogramming of the Diurnal Glucocorticoid Hormone Response by High-Fat Diet.
Fabiana Quagliarini, Ashfaq Ali Mir, Kinga Balazs, Michael Wierer, Kenneth Allen Dyar, Celine Jouffe, Konstantinos Makris, Johann Hawe, Matthias Heinig, Fabian Volker Filipp,[...]. Mol Cell 2019
36
15

Resetting of circadian time in peripheral tissues by glucocorticoid signaling.
A Balsalobre, S A Brown, L Marcacci, F Tronche, C Kellendonk, H M Reichardt, G Schütz, U Schibler. Science 2000
15

Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver.
Daniel Mauvoisin, Jingkui Wang, Céline Jouffe, Eva Martin, Florian Atger, Patrice Waridel, Manfredo Quadroni, Frédéric Gachon, Felix Naef. Proc Natl Acad Sci U S A 2014
205
15

Circadian hepatocyte clocks keep synchrony in the absence of a master pacemaker in the suprachiasmatic nucleus or other extrahepatic clocks.
Flore Sinturel, Pascal Gos, Volodymyr Petrenko, Claudia Hagedorn, Florian Kreppel, Kai-Florian Storch, Darko Knutti, Andre Liani, Charles Weitz, Yann Emmenegger,[...]. Genes Dev 2021
30
15

Circadian physiology of metabolism.
Satchidananda Panda. Science 2016
409
15

Time-Restricted Feeding Prevents Obesity and Metabolic Syndrome in Mice Lacking a Circadian Clock.
Amandine Chaix, Terry Lin, Hiep D Le, Max W Chang, Satchidananda Panda. Cell Metab 2019
228
15

Entrainment of the circadian clock in the liver by feeding.
K A Stokkan, S Yamazaki, H Tei, Y Sakaki, M Menaker. Science 2001
15

Mop3 is an essential component of the master circadian pacemaker in mammals.
M K Bunger, L D Wilsbacher, S M Moran, C Clendenin, L A Radcliffe, J B Hogenesch, M C Simon, J S Takahashi, C A Bradfield. Cell 2000
15

The liver-clock coordinates rhythmicity of peripheral tissues in response to feeding.
Gal Manella, Elizabeth Sabath, Rona Aviram, Vaishnavi Dandavate, Saar Ezagouri, Marina Golik, Yaarit Adamovich, Gad Asher. Nat Metab 2021
23
17

Obesity and metabolic syndrome in circadian Clock mutant mice.
Fred W Turek, Corinne Joshu, Akira Kohsaka, Emily Lin, Ganka Ivanova, Erin McDearmon, Aaron Laposky, Sue Losee-Olson, Amy Easton, Dalan R Jensen,[...]. Science 2005
15

Disruption of the clock components CLOCK and BMAL1 leads to hypoinsulinaemia and diabetes.
Biliana Marcheva, Kathryn Moynihan Ramsey, Ethan D Buhr, Yumiko Kobayashi, Hong Su, Caroline H Ko, Ganka Ivanova, Chiaki Omura, Shelley Mo, Martha H Vitaterna,[...]. Nature 2010
945
15

Hepatic Bmal1 Regulates Rhythmic Mitochondrial Dynamics and Promotes Metabolic Fitness.
David Jacobi, Sihao Liu, Kristopher Burkewitz, Nora Kory, Nelson H Knudsen, Ryan K Alexander, Ugur Unluturk, Xiaobo Li, Xiaohui Kong, Alexander L Hyde,[...]. Cell Metab 2015
183
15

Time-restricted feeding is a preventative and therapeutic intervention against diverse nutritional challenges.
Amandine Chaix, Amir Zarrinpar, Phuong Miu, Satchidananda Panda. Cell Metab 2014
459
15

Ten-Hour Time-Restricted Eating Reduces Weight, Blood Pressure, and Atherogenic Lipids in Patients with Metabolic Syndrome.
Michael J Wilkinson, Emily N C Manoogian, Adena Zadourian, Hannah Lo, Savannah Fakhouri, Azarin Shoghi, Xinran Wang, Jason G Fleischer, Saket Navlakha, Satchidananda Panda,[...]. Cell Metab 2020
250
15

Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations.
Christoph A Thaiss, Maayan Levy, Tal Korem, Lenka Dohnalová, Hagit Shapiro, Diego A Jaitin, Eyal David, Deborah R Winter, Meital Gury-BenAri, Evgeny Tatirovsky,[...]. Cell 2016
373
15

Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis.
Christoph A Thaiss, David Zeevi, Maayan Levy, Gili Zilberman-Schapira, Jotham Suez, Anouk C Tengeler, Lior Abramson, Meirav N Katz, Tal Korem, Niv Zmora,[...]. Cell 2014
616
15

Rhythmicity of the intestinal microbiota is regulated by gender and the host circadian clock.
Xue Liang, Frederic D Bushman, Garret A FitzGerald. Proc Natl Acad Sci U S A 2015
257
15

Space-time logic of liver gene expression at sub-lobular scale.
Colas Droin, Jakob El Kholtei, Keren Bahar Halpern, Clémence Hurni, Milena Rozenberg, Sapir Muvkadi, Shalev Itzkovitz, Felix Naef. Nat Metab 2021
22
18

Improved statistical methods enable greater sensitivity in rhythm detection for genome-wide data.
Alan L Hutchison, Mark Maienschein-Cline, Andrew H Chiang, S M Ali Tabei, Herman Gudjonson, Neil Bahroos, Ravi Allada, Aaron R Dinner. PLoS Comput Biol 2015
45
11

Circadian rhythms in the absence of the clock gene Bmal1.
Sandipan Ray, Utham K Valekunja, Alessandra Stangherlin, Steven A Howell, Ambrosius P Snijders, Gopinath Damodaran, Akhilesh B Reddy. Science 2020
69
11


edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
11

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
11

Cosinor-based rhythmometry.
Germaine Cornelissen. Theor Biol Med Model 2014
265
11

Circadian gene expression in individual fibroblasts: cell-autonomous and self-sustained oscillators pass time to daughter cells.
Emi Nagoshi, Camille Saini, Christoph Bauer, Thierry Laroche, Felix Naef, Ueli Schibler. Cell 2004
698
11



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.