A citation-based method for searching scientific literature

Anna Ender, Maja Etzel, Stefan Hammer, Sven Findeiß, Peter Stadler, Mario Mörl. Nucleic Acids Res 2021
Times Cited: 3







List of co-cited articles
25 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


De novo design of a synthetic riboswitch that regulates transcription termination.
Manja Wachsmuth, Sven Findeiß, Nadine Weissheimer, Peter F Stadler, Mario Mörl. Nucleic Acids Res 2013
113
100

Genetic control by a metabolite binding mRNA.
Ali Nahvi, Narasimhan Sudarsan, Margaret S Ebert, Xiang Zou, Kenneth L Brown, Ronald R Breaker. Chem Biol 2002
505
100


Design criteria for synthetic riboswitches acting on transcription.
Manja Wachsmuth, Gesine Domin, Ronny Lorenz, Robert Serfling, Sven Findeiß, Peter F Stadler, Mario Mörl. RNA Biol 2015
27
66

Genetic control by metabolite-binding riboswitches.
Wade C Winkler, Ronald R Breaker. Chembiochem 2003
196
66

Design of Mammalian ON-Riboswitches Based on Tandemly Fused Aptamer and Ribozyme.
Kamila Mustafina, Keisuke Fukunaga, Yohei Yokobayashi. ACS Synth Biol 2020
10
66


A Theophylline-Responsive Riboswitch Regulates Expression of Nuclear-Encoded Genes.
Nana Shanidze, Felina Lenkeit, Jörg S Hartig, Dietmar Funck. Plant Physiol 2020
8
66

Regulation of bacterial gene expression by riboswitches.
Wade C Winkler, Ronald R Breaker. Annu Rev Microbiol 2005
505
66

The riboswitch control of bacterial metabolism.
Evgeny Nudler, Alexander S Mironov. Trends Biochem Sci 2004
386
66

External guide sequence technology: a path to development of novel antimicrobial therapeutics.
Carol Davies-Sala, Alfonso Soler-Bistué, Robert A Bonomo, Angeles Zorreguieta, Marcelo E Tolmasky. Ann N Y Acad Sci 2015
20
66

The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme.
C Guerrier-Takada, K Gardiner, T Marsh, N Pace, S Altman. Cell 1983
66

Theophylline-dependent riboswitch as a novel genetic tool for strict regulation of protein expression in Cyanobacterium Synechococcus elongatus PCC 7942.
Yoichi Nakahira, Atsushi Ogawa, Hiroyuki Asano, Tokitaka Oyama, Yuzuru Tozawa. Plant Cell Physiol 2013
87
66

In-line probing analysis of riboswitches.
Elizabeth E Regulski, Ronald R Breaker. Methods Mol Biol 2008
233
66

Interlocking structural motifs mediate molecular discrimination by a theophylline-binding RNA.
G R Zimmermann, R D Jenison, C L Wick, J P Simorre, A Pardi. Nat Struct Biol 1997
219
66

The Diversity of Ribonuclease P: Protein and RNA Catalysts with Analogous Biological Functions.
Bradley P Klemm, Nancy Wu, Yu Chen, Xin Liu, Kipchumba J Kaitany, Michael J Howard, Carol A Fierke. Biomolecules 2016
37
66

Evidence that substrate-specific effects of C5 protein lead to uniformity in binding and catalysis by RNase P.
Lei Sun, Frank E Campbell, Nathan H Zahler, Michael E Harris. EMBO J 2006
65
66


Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria.
Alexander S Mironov, Ivan Gusarov, Ruslan Rafikov, Lubov Errais Lopez, Konstantin Shatalin, Rimma A Kreneva, Daniel A Perumov, Evgeny Nudler. Cell 2002
443
66

In vitro processing of E. coli tRNA precursors.
P Schedl, J Roberts, P Primakoff. Cell 1976
56
66

High-resolution molecular discrimination by RNA.
R D Jenison, S C Gill, A Pardi, B Polisky. Science 1994
738
66

RNA folding with hard and soft constraints.
Ronny Lorenz, Ivo L Hofacker, Peter F Stadler. Algorithms Mol Biol 2016
45
66

Comparison of RNAi efficiency mediated by tetracycline-responsive H1 and U6 promoter variants in mammalian cell lines.
Jørn R Henriksen, Cecilie Løkke, Martin Hammerø, Dirk Geerts, Rogier Versteeg, Trond Flaegstad, Christer Einvik. Nucleic Acids Res 2007
29
66

Analysis of the RNA Binding Specificity Landscape of C5 Protein Reveals Structure and Sequence Preferences that Direct RNase P Specificity.
Hsuan-Chun Lin, Jing Zhao, Courtney N Niland, Brandon Tran, Eckhard Jankowsky, Michael E Harris. Cell Chem Biol 2016
14
66


Point-of-Use Detection of Environmental Fluoride via a Cell-Free Riboswitch-Based Biosensor.
Walter Thavarajah, Adam D Silverman, Matthew S Verosloff, Nancy Kelley-Loughnane, Michael C Jewett, Julius B Lucks. ACS Synth Biol 2020
55
33

Cell-Free Synthetic Biology: Engineering Beyond the Cell.
Jessica G Perez, Jessica C Stark, Michael C Jewett. Cold Spring Harb Perspect Biol 2016
64
33


Inhibition of translation by RNA-small molecule interactions.
Isabelle Harvey, Philippe Garneau, Jerry Pelletier. RNA 2002
81
33


Improving the Activity of DNA-Encoded Sensing Elements through Confinement in Silk Microcapsules.
Irina Drachuk, Svetlana Harbaugh, Jorge L Chávez, Nancy Kelley-Loughnane. ACS Appl Mater Interfaces 2020
8
33

Engineered riboswitches: overview, problems and trends.
Beatrix Suess, Julia E Weigand. RNA Biol 2008
68
33

Riboswitches exert genetic control through metabolite-induced conformational change.
Juliane K Soukup, Garrett A Soukup. Curr Opin Struct Biol 2004
73
33

Plant ribosome shunting in vitro.
W Schmidt-Puchta, D Dominguez, D Lewetag, T Hohn. Nucleic Acids Res 1997
30
33

Protein synthesis by pure translation systems.
Yoshihiro Shimizu, Takashi Kanamori, Takuya Ueda. Methods 2005
240
33

Nonlinear ribosome migration on cauliflower mosaic virus 35S RNA.
J Fütterer, Z Kiss-László, T Hohn. Cell 1993
174
33

A low-cost paper-based synthetic biology platform for analyzing gut microbiota and host biomarkers.
Melissa K Takahashi, Xiao Tan, Aaron J Dy, Dana Braff, Reid T Akana, Yoshikazu Furuta, Nina Donghia, Ashwin Ananthakrishnan, James J Collins. Nat Commun 2018
104
33

Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components.
Keith Pardee, Alexander A Green, Melissa K Takahashi, Dana Braff, Guillaume Lambert, Jeong Wook Lee, Tom Ferrante, Duo Ma, Nina Donghia, Melina Fan,[...]. Cell 2016
555
33

Riboswitch diversity and distribution.
Phillip J McCown, Keith A Corbino, Shira Stav, Madeline E Sherlock, Ronald R Breaker. RNA 2017
219
33

Control of alternative RNA splicing and gene expression by eukaryotic riboswitches.
Ming T Cheah, Andreas Wachter, Narasimhan Sudarsan, Ronald R Breaker. Nature 2007
276
33


Characterization of synthetic riboswitch in cell-free protein expression systems.
Yaroslav Chushak, Svetlana Harbaugh, Kathryn Zimlich, Bryan Alfred, Jorge Chávez, Nancy Kelley-Loughnane. RNA Biol 2021
2
50

Low-cost detection of norovirus using paper-based cell-free systems and synbody-based viral enrichment.
Duo Ma, Luhui Shen, Kaiyue Wu, Chris W Diehnelt, Alexander A Green. Synth Biol (Oxf) 2018
48
33

Engineering precision RNA molecular switches.
G A Soukup, R R Breaker. Proc Natl Acad Sci U S A 1999
247
33


Biofunction-assisted DNA detection through RNase H-enhanced 3' processing of a premature tRNA probe in a wheat germ extract.
Atsushi Ogawa, Junichiro Tabuchi, Yasunori Doi, Masashi Takamatsu. Bioorg Med Chem Lett 2016
4
33

A cell-free protein synthesis system for high-throughput proteomics.
Tatsuya Sawasaki, Tomio Ogasawara, Ryo Morishita, Yaeta Endo. Proc Natl Acad Sci U S A 2002
370
33

Microscale to manufacturing scale-up of cell-free cytokine production--a new approach for shortening protein production development timelines.
James F Zawada, Gang Yin, Alexander R Steiner, Junhao Yang, Alpana Naresh, Sushmita M Roy, Daniel S Gold, Henry G Heinsohn, Christopher J Murray. Biotechnol Bioeng 2011
209
33


Altering molecular recognition of RNA aptamers by allosteric selection.
G A Soukup, G A Emilsson, R R Breaker. J Mol Biol 2000
80
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.