Chao Zeng, Masahiro Onoguchi, Michiaki Hamada. Mob DNA 2021
Times Cited: 4
Times Cited: 4
Times Cited
Times Co-cited
Similarity
R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
75
The R-loop is a common chromatin feature of the Arabidopsis genome.
Wei Xu, Hui Xu, Kuan Li, Yingxu Fan, Yang Liu, Xuerui Yang, Qianwen Sun. Nat Plants 2017
Wei Xu, Hui Xu, Kuan Li, Yingxu Fan, Yang Liu, Xuerui Yang, Qianwen Sun. Nat Plants 2017
75
Regulatory R-loops as facilitators of gene expression and genome stability.
Christof Niehrs, Brian Luke. Nat Rev Mol Cell Biol 2020
Christof Niehrs, Brian Luke. Nat Rev Mol Cell Biol 2020
50
R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
50
Stress-induced transcription of satellite III repeats.
Caroline Jolly, Alexandra Metz, Jérôme Govin, Marc Vigneron, Bryan M Turner, Saadi Khochbin, Claire Vourc'h. J Cell Biol 2004
Caroline Jolly, Alexandra Metz, Jérôme Govin, Marc Vigneron, Bryan M Turner, Saadi Khochbin, Claire Vourc'h. J Cell Biol 2004
50
Human proteins that interact with RNA/DNA hybrids.
Isabel X Wang, Christopher Grunseich, Jennifer Fox, Joshua Burdick, Zhengwei Zhu, Niema Ravazian, Markus Hafner, Vivian G Cheung. Genome Res 2018
Isabel X Wang, Christopher Grunseich, Jennifer Fox, Joshua Burdick, Zhengwei Zhu, Niema Ravazian, Markus Hafner, Vivian G Cheung. Genome Res 2018
50
R-Loops Enhance Polycomb Repression at a Subset of Developmental Regulator Genes.
Konstantina Skourti-Stathaki, Elena Torlai Triglia, Marie Warburton, Philipp Voigt, Adrian Bird, Ana Pombo. Mol Cell 2019
Konstantina Skourti-Stathaki, Elena Torlai Triglia, Marie Warburton, Philipp Voigt, Adrian Bird, Ana Pombo. Mol Cell 2019
50
RNA-DNA strand exchange by the Drosophila Polycomb complex PRC2.
Célia Alecki, Victoria Chiwara, Lionel A Sanz, Daniel Grau, Osvaldo Arias Pérez, Elodie L Boulier, Karim-Jean Armache, Frédéric Chédin, Nicole J Francis. Nat Commun 2020
Célia Alecki, Victoria Chiwara, Lionel A Sanz, Daniel Grau, Osvaldo Arias Pérez, Elodie L Boulier, Karim-Jean Armache, Frédéric Chédin, Nicole J Francis. Nat Commun 2020
50
R-ChIP Using Inactive RNase H Reveals Dynamic Coupling of R-loops with Transcriptional Pausing at Gene Promoters.
Liang Chen, Jia-Yu Chen, Xuan Zhang, Ying Gu, Rui Xiao, Changwei Shao, Peng Tang, Hao Qian, Daji Luo, Hairi Li,[...]. Mol Cell 2017
Liang Chen, Jia-Yu Chen, Xuan Zhang, Ying Gu, Rui Xiao, Changwei Shao, Peng Tang, Hao Qian, Daji Luo, Hairi Li,[...]. Mol Cell 2017
50
S1-DRIP-seq identifies high expression and polyA tracts as major contributors to R-loop formation.
Lamia Wahba, Lorenzo Costantino, Frederick J Tan, Anjali Zimmer, Douglas Koshland. Genes Dev 2016
Lamia Wahba, Lorenzo Costantino, Frederick J Tan, Anjali Zimmer, Douglas Koshland. Genes Dev 2016
50
RNase H1 and H2 Are Differentially Regulated to Process RNA-DNA Hybrids.
Arianna Lockhart, Vanessa Borges Pires, Fabio Bento, Vanessa Kellner, Sarah Luke-Glaser, George Yakoub, Helle D Ulrich, Brian Luke. Cell Rep 2019
Arianna Lockhart, Vanessa Borges Pires, Fabio Bento, Vanessa Kellner, Sarah Luke-Glaser, George Yakoub, Helle D Ulrich, Brian Luke. Cell Rep 2019
50
RNaseH1 regulates TERRA-telomeric DNA hybrids and telomere maintenance in ALT tumour cells.
Rajika Arora, Yongwoo Lee, Harry Wischnewski, Catherine M Brun, Tobias Schwarz, Claus M Azzalin. Nat Commun 2014
Rajika Arora, Yongwoo Lee, Harry Wischnewski, Catherine M Brun, Tobias Schwarz, Claus M Azzalin. Nat Commun 2014
50
Pericentromeric satellite repeat expansions through RNA-derived DNA intermediates in cancer.
Francesca Bersani, Eunjung Lee, Peter V Kharchenko, Andrew W Xu, Mingzhu Liu, Kristina Xega, Olivia C MacKenzie, Brian W Brannigan, Ben S Wittner, Hyunchul Jung,[...]. Proc Natl Acad Sci U S A 2015
Francesca Bersani, Eunjung Lee, Peter V Kharchenko, Andrew W Xu, Mingzhu Liu, Kristina Xega, Olivia C MacKenzie, Brian W Brannigan, Ben S Wittner, Hyunchul Jung,[...]. Proc Natl Acad Sci U S A 2015
50
BEDTools: a flexible suite of utilities for comparing genomic features.
Aaron R Quinlan, Ira M Hall. Bioinformatics 2010
Aaron R Quinlan, Ira M Hall. Bioinformatics 2010
50
HISAT: a fast spliced aligner with low memory requirements.
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
50
Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
50
50
ROS function in redox signaling and oxidative stress.
Michael Schieber, Navdeep S Chandel. Curr Biol 2014
Michael Schieber, Navdeep S Chandel. Curr Biol 2014
25
Characterization of R-Loop Structures Using Single-Molecule R-Loop Footprinting and Sequencing.
Maika Malig, Frederic Chedin. Methods Mol Biol 2020
Maika Malig, Frederic Chedin. Methods Mol Biol 2020
100
Identification of R-loop-forming Sequences in Drosophila melanogaster Embryos and Tissue Culture Cells Using DRIP-seq.
Célia Alecki, Nicole J Francis. Bio Protoc 2021
Célia Alecki, Nicole J Francis. Bio Protoc 2021
100
RNases H: Structure and mechanism.
Malwina Hyjek, Małgorzata Figiel, Marcin Nowotny. DNA Repair (Amst) 2019
Malwina Hyjek, Małgorzata Figiel, Marcin Nowotny. DNA Repair (Amst) 2019
25
Bidirectional promoters are the major source of gene activation-associated non-coding RNAs in mammals.
Masahiro Uesaka, Osamu Nishimura, Yasuhiro Go, Kinichi Nakashima, Kiyokazu Agata, Takuya Imamura. BMC Genomics 2014
Masahiro Uesaka, Osamu Nishimura, Yasuhiro Go, Kinichi Nakashima, Kiyokazu Agata, Takuya Imamura. BMC Genomics 2014
25
Role of the bHLH transcription factor TCF21 in development and tumorigenesis.
C F P Lotfi, B S Passaia, J L Kremer. Braz J Med Biol Res 2021
C F P Lotfi, B S Passaia, J L Kremer. Braz J Med Biol Res 2021
50
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.
John L Rinn, Michael Kertesz, Jordon K Wang, Sharon L Squazzo, Xiao Xu, Samantha A Brugmann, L Henry Goodnough, Jill A Helms, Peggy J Farnham, Eran Segal,[...]. Cell 2007
John L Rinn, Michael Kertesz, Jordon K Wang, Sharon L Squazzo, Xiao Xu, Samantha A Brugmann, L Henry Goodnough, Jill A Helms, Peggy J Farnham, Eran Segal,[...]. Cell 2007
25
Long non-coding RNA NEAT1-centric gene regulation.
Ziqiang Wang, Kun Li, Weiren Huang. Cell Mol Life Sci 2020
Ziqiang Wang, Kun Li, Weiren Huang. Cell Mol Life Sci 2020
25
Characterization of functional relationships of R-loops with gene transcription and epigenetic modifications in rice.
Yuan Fang, Lifen Chen, Kande Lin, Yilong Feng, Pengyue Zhang, Xiucai Pan, Jennifer Sanders, Yufeng Wu, Xiu-E Wang, Zhen Su,[...]. Genome Res 2019
Yuan Fang, Lifen Chen, Kande Lin, Yilong Feng, Pengyue Zhang, Xiucai Pan, Jennifer Sanders, Yufeng Wu, Xiu-E Wang, Zhen Su,[...]. Genome Res 2019
25
Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution.
Moran N Cabili, Margaret C Dunagin, Patrick D McClanahan, Andrew Biaesch, Olivia Padovan-Merhar, Aviv Regev, John L Rinn, Arjun Raj. Genome Biol 2015
Moran N Cabili, Margaret C Dunagin, Patrick D McClanahan, Andrew Biaesch, Olivia Padovan-Merhar, Aviv Regev, John L Rinn, Arjun Raj. Genome Biol 2015
25
Immobilization of proteins in the nucleolus by ribosomal intergenic spacer noncoding RNA.
Timothy E Audas, Mathieu D Jacob, Stephen Lee. Mol Cell 2012
Timothy E Audas, Mathieu D Jacob, Stephen Lee. Mol Cell 2012
25
Imaging of DNA and RNA in Living Eukaryotic Cells to Reveal Spatiotemporal Dynamics of Gene Expression.
Hanae Sato, Sulagna Das, Robert H Singer, Maria Vera. Annu Rev Biochem 2020
Hanae Sato, Sulagna Das, Robert H Singer, Maria Vera. Annu Rev Biochem 2020
25
Single-molecule fluorescence in situ hybridization: quantitative imaging of single RNA molecules.
Sunjong Kwon. BMB Rep 2013
Sunjong Kwon. BMB Rep 2013
25
DEAD-Box RNA Helicases and Genome Stability.
Michael Cargill, Rasika Venkataraman, Stanley Lee. Genes (Basel) 2021
Michael Cargill, Rasika Venkataraman, Stanley Lee. Genes (Basel) 2021
25
R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus.
Qianwen Sun, Tibor Csorba, Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Caroline Dean. Science 2013
Qianwen Sun, Tibor Csorba, Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Caroline Dean. Science 2013
25
Beyond CLIP: advances and opportunities to measure RBP-RNA and RNA-RNA interactions.
Chenyu Lin, Wayne O Miles. Nucleic Acids Res 2019
Chenyu Lin, Wayne O Miles. Nucleic Acids Res 2019
25
Specific recognition of RNA/DNA hybrid and enhancement of human RNase H1 activity by HBD.
Marcin Nowotny, Susana M Cerritelli, Rodolfo Ghirlando, Sergei A Gaidamakov, Robert J Crouch, Wei Yang. EMBO J 2008
Marcin Nowotny, Susana M Cerritelli, Rodolfo Ghirlando, Sergei A Gaidamakov, Robert J Crouch, Wei Yang. EMBO J 2008
25
Isolation and genome-wide characterization of cellular DNA:RNA triplex structures.
Nevcin Sentürk Cetin, Chao-Chung Kuo, Teodora Ribarska, Ronghui Li, Ivan G Costa, Ingrid Grummt. Nucleic Acids Res 2019
Nevcin Sentürk Cetin, Chao-Chung Kuo, Teodora Ribarska, Ronghui Li, Ivan G Costa, Ingrid Grummt. Nucleic Acids Res 2019
25
The long non-coding RNA Fendrr links epigenetic control mechanisms to gene regulatory networks in mammalian embryogenesis.
Phillip Grote, Bernhard G Herrmann. RNA Biol 2013
Phillip Grote, Bernhard G Herrmann. RNA Biol 2013
25
Overview of MicroRNA Biogenesis, Mechanisms of Actions, and Circulation.
Jacob O'Brien, Heyam Hayder, Yara Zayed, Chun Peng. Front Endocrinol (Lausanne) 2018
Jacob O'Brien, Heyam Hayder, Yara Zayed, Chun Peng. Front Endocrinol (Lausanne) 2018
25
FISH-quant: automatic counting of transcripts in 3D FISH images.
Florian Mueller, Adrien Senecal, Katjana Tantale, Hervé Marie-Nelly, Nathalie Ly, Olivier Collin, Eugenia Basyuk, Edouard Bertrand, Xavier Darzacq, Christophe Zimmer. Nat Methods 2013
Florian Mueller, Adrien Senecal, Katjana Tantale, Hervé Marie-Nelly, Nathalie Ly, Olivier Collin, Eugenia Basyuk, Edouard Bertrand, Xavier Darzacq, Christophe Zimmer. Nat Methods 2013
25
Rad52 Inverse Strand Exchange Drives RNA-Templated DNA Double-Strand Break Repair.
Olga M Mazina, Havva Keskin, Kritika Hanamshet, Francesca Storici, Alexander V Mazin. Mol Cell 2017
Olga M Mazina, Havva Keskin, Kritika Hanamshet, Francesca Storici, Alexander V Mazin. Mol Cell 2017
25
The genetics of myelodysplastic syndrome: from clonal haematopoiesis to secondary leukaemia.
Adam S Sperling, Christopher J Gibson, Benjamin L Ebert. Nat Rev Cancer 2017
Adam S Sperling, Christopher J Gibson, Benjamin L Ebert. Nat Rev Cancer 2017
25
High-resolution, strand-specific R-loop mapping via S9.6-based DNA-RNA immunoprecipitation and high-throughput sequencing.
Lionel A Sanz, Frédéric Chédin. Nat Protoc 2019
Lionel A Sanz, Frédéric Chédin. Nat Protoc 2019
25
PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells.
Syuzo Kaneko, Jinsook Son, Steven S Shen, Danny Reinberg, Roberto Bonasio. Nat Struct Mol Biol 2013
Syuzo Kaneko, Jinsook Son, Steven S Shen, Danny Reinberg, Roberto Bonasio. Nat Struct Mol Biol 2013
25
lncRNA-Induced Nucleosome Repositioning Reinforces Transcriptional Repression of rRNA Genes upon Hypotonic Stress.
Zhongliang Zhao, Marcel Andre Dammert, Ingrid Grummt, Holger Bierhoff. Cell Rep 2016
Zhongliang Zhao, Marcel Andre Dammert, Ingrid Grummt, Holger Bierhoff. Cell Rep 2016
25
Gene regulation by long non-coding RNAs and its biological functions.
Luisa Statello, Chun-Jie Guo, Ling-Ling Chen, Maite Huarte. Nat Rev Mol Cell Biol 2021
Luisa Statello, Chun-Jie Guo, Ling-Ling Chen, Maite Huarte. Nat Rev Mol Cell Biol 2021
25
Negative supercoil at gene boundaries modulates gene topology.
Yathish Jagadheesh Achar, Mohamood Adhil, Ramveer Choudhary, Nick Gilbert, Marco Foiani. Nature 2020
Yathish Jagadheesh Achar, Mohamood Adhil, Ramveer Choudhary, Nick Gilbert, Marco Foiani. Nature 2020
25
pRNA: NoRC-associated RNA of rRNA operons.
Stefanie Wehner, Anja K Dörrich, Philipp Ciba, Annegret Wilde, Manja Marz. RNA Biol 2014
Stefanie Wehner, Anja K Dörrich, Philipp Ciba, Annegret Wilde, Manja Marz. RNA Biol 2014
25
Loss of TOP3B leads to increased R-loop formation and genome instability.
Tao Zhang, Mathew Wallis, Vida Petrovic, Jackie Challis, Paul Kalitsis, Damien F Hudson. Open Biol 2019
Tao Zhang, Mathew Wallis, Vida Petrovic, Jackie Challis, Paul Kalitsis, Damien F Hudson. Open Biol 2019
25
The evolutionary acquisition and mode of functions of promoter-associated non-coding RNAs (pancRNAs) for mammalian development.
Boyang An, Tomonori Kameda, Takuya Imamura. Essays Biochem 2021
Boyang An, Tomonori Kameda, Takuya Imamura. Essays Biochem 2021
100
Molecular mechanisms driving transcriptional stress responses.
Anniina Vihervaara, Fabiana M Duarte, John T Lis. Nat Rev Genet 2018
Anniina Vihervaara, Fabiana M Duarte, John T Lis. Nat Rev Genet 2018
25
Homeotic Genes: Clustering, Modularity, and Diversity.
Nikhil Hajirnis, Rakesh K Mishra. Front Cell Dev Biol 2021
Nikhil Hajirnis, Rakesh K Mishra. Front Cell Dev Biol 2021
50
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.