A citation-based method for searching scientific literature

Chao Zeng, Masahiro Onoguchi, Michiaki Hamada. Mob DNA 2021
Times Cited: 4







List of co-cited articles
17 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
259
75

The R-loop is a common chromatin feature of the Arabidopsis genome.
Wei Xu, Hui Xu, Kuan Li, Yingxu Fan, Yang Liu, Xuerui Yang, Qianwen Sun. Nat Plants 2017
87
75

Regulatory R-loops as facilitators of gene expression and genome stability.
Christof Niehrs, Brian Luke. Nat Rev Mol Cell Biol 2020
116
50

R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
471
50

Stress-induced transcription of satellite III repeats.
Caroline Jolly, Alexandra Metz, Jérôme Govin, Marc Vigneron, Bryan M Turner, Saadi Khochbin, Claire Vourc'h. J Cell Biol 2004
210
50

Human proteins that interact with RNA/DNA hybrids.
Isabel X Wang, Christopher Grunseich, Jennifer Fox, Joshua Burdick, Zhengwei Zhu, Niema Ravazian, Markus Hafner, Vivian G Cheung. Genome Res 2018
65
50

R-Loops Enhance Polycomb Repression at a Subset of Developmental Regulator Genes.
Konstantina Skourti-Stathaki, Elena Torlai Triglia, Marie Warburton, Philipp Voigt, Adrian Bird, Ana Pombo. Mol Cell 2019
43
50

RNA-DNA strand exchange by the Drosophila Polycomb complex PRC2.
Célia Alecki, Victoria Chiwara, Lionel A Sanz, Daniel Grau, Osvaldo Arias Pérez, Elodie L Boulier, Karim-Jean Armache, Frédéric Chédin, Nicole J Francis. Nat Commun 2020
24
50

R-ChIP Using Inactive RNase H Reveals Dynamic Coupling of R-loops with Transcriptional Pausing at Gene Promoters.
Liang Chen, Jia-Yu Chen, Xuan Zhang, Ying Gu, Rui Xiao, Changwei Shao, Peng Tang, Hao Qian, Daji Luo, Hairi Li,[...]. Mol Cell 2017
152
50

S1-DRIP-seq identifies high expression and polyA tracts as major contributors to R-loop formation.
Lamia Wahba, Lorenzo Costantino, Frederick J Tan, Anjali Zimmer, Douglas Koshland. Genes Dev 2016
148
50

RNase H1 and H2 Are Differentially Regulated to Process RNA-DNA Hybrids.
Arianna Lockhart, Vanessa Borges Pires, Fabio Bento, Vanessa Kellner, Sarah Luke-Glaser, George Yakoub, Helle D Ulrich, Brian Luke. Cell Rep 2019
42
50

RNaseH1 regulates TERRA-telomeric DNA hybrids and telomere maintenance in ALT tumour cells.
Rajika Arora, Yongwoo Lee, Harry Wischnewski, Catherine M Brun, Tobias Schwarz, Claus M Azzalin. Nat Commun 2014
223
50

Pericentromeric satellite repeat expansions through RNA-derived DNA intermediates in cancer.
Francesca Bersani, Eunjung Lee, Peter V Kharchenko, Andrew W Xu, Mingzhu Liu, Kristina Xega, Olivia C MacKenzie, Brian W Brannigan, Ben S Wittner, Hyunchul Jung,[...]. Proc Natl Acad Sci U S A 2015
88
50


HISAT: a fast spliced aligner with low memory requirements.
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
50

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
50

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
50

ROS function in redox signaling and oxidative stress.
Michael Schieber, Navdeep S Chandel. Curr Biol 2014
25



RNases H: Structure and mechanism.
Malwina Hyjek, Małgorzata Figiel, Marcin Nowotny. DNA Repair (Amst) 2019
50
25

Bidirectional promoters are the major source of gene activation-associated non-coding RNAs in mammals.
Masahiro Uesaka, Osamu Nishimura, Yasuhiro Go, Kinichi Nakashima, Kiyokazu Agata, Takuya Imamura. BMC Genomics 2014
70
25

Role of the bHLH transcription factor TCF21 in development and tumorigenesis.
C F P Lotfi, B S Passaia, J L Kremer. Braz J Med Biol Res 2021
2
50

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.
John L Rinn, Michael Kertesz, Jordon K Wang, Sharon L Squazzo, Xiao Xu, Samantha A Brugmann, L Henry Goodnough, Jill A Helms, Peggy J Farnham, Eran Segal,[...]. Cell 2007
25

Long non-coding RNA NEAT1-centric gene regulation.
Ziqiang Wang, Kun Li, Weiren Huang. Cell Mol Life Sci 2020
38
25

Characterization of functional relationships of R-loops with gene transcription and epigenetic modifications in rice.
Yuan Fang, Lifen Chen, Kande Lin, Yilong Feng, Pengyue Zhang, Xiucai Pan, Jennifer Sanders, Yufeng Wu, Xiu-E Wang, Zhen Su,[...]. Genome Res 2019
19
25

Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution.
Moran N Cabili, Margaret C Dunagin, Patrick D McClanahan, Andrew Biaesch, Olivia Padovan-Merhar, Aviv Regev, John L Rinn, Arjun Raj. Genome Biol 2015
383
25

Immobilization of proteins in the nucleolus by ribosomal intergenic spacer noncoding RNA.
Timothy E Audas, Mathieu D Jacob, Stephen Lee. Mol Cell 2012
168
25

Imaging of DNA and RNA in Living Eukaryotic Cells to Reveal Spatiotemporal Dynamics of Gene Expression.
Hanae Sato, Sulagna Das, Robert H Singer, Maria Vera. Annu Rev Biochem 2020
21
25


DEAD-Box RNA Helicases and Genome Stability.
Michael Cargill, Rasika Venkataraman, Stanley Lee. Genes (Basel) 2021
5
25

R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus.
Qianwen Sun, Tibor Csorba, Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Caroline Dean. Science 2013
224
25


Specific recognition of RNA/DNA hybrid and enhancement of human RNase H1 activity by HBD.
Marcin Nowotny, Susana M Cerritelli, Rodolfo Ghirlando, Sergei A Gaidamakov, Robert J Crouch, Wei Yang. EMBO J 2008
64
25

Isolation and genome-wide characterization of cellular DNA:RNA triplex structures.
Nevcin Sentürk Cetin, Chao-Chung Kuo, Teodora Ribarska, Ronghui Li, Ivan G Costa, Ingrid Grummt. Nucleic Acids Res 2019
35
25


Overview of MicroRNA Biogenesis, Mechanisms of Actions, and Circulation.
Jacob O'Brien, Heyam Hayder, Yara Zayed, Chun Peng. Front Endocrinol (Lausanne) 2018
25

FISH-quant: automatic counting of transcripts in 3D FISH images.
Florian Mueller, Adrien Senecal, Katjana Tantale, Hervé Marie-Nelly, Nathalie Ly, Olivier Collin, Eugenia Basyuk, Edouard Bertrand, Xavier Darzacq, Christophe Zimmer. Nat Methods 2013
199
25

Rad52 Inverse Strand Exchange Drives RNA-Templated DNA Double-Strand Break Repair.
Olga M Mazina, Havva Keskin, Kritika Hanamshet, Francesca Storici, Alexander V Mazin. Mol Cell 2017
76
25

The genetics of myelodysplastic syndrome: from clonal haematopoiesis to secondary leukaemia.
Adam S Sperling, Christopher J Gibson, Benjamin L Ebert. Nat Rev Cancer 2017
317
25


PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells.
Syuzo Kaneko, Jinsook Son, Steven S Shen, Danny Reinberg, Roberto Bonasio. Nat Struct Mol Biol 2013
214
25

lncRNA-Induced Nucleosome Repositioning Reinforces Transcriptional Repression of rRNA Genes upon Hypotonic Stress.
Zhongliang Zhao, Marcel Andre Dammert, Ingrid Grummt, Holger Bierhoff. Cell Rep 2016
39
25

Gene regulation by long non-coding RNAs and its biological functions.
Luisa Statello, Chun-Jie Guo, Ling-Ling Chen, Maite Huarte. Nat Rev Mol Cell Biol 2021
686
25

Negative supercoil at gene boundaries modulates gene topology.
Yathish Jagadheesh Achar, Mohamood Adhil, Ramveer Choudhary, Nick Gilbert, Marco Foiani. Nature 2020
26
25

pRNA: NoRC-associated RNA of rRNA operons.
Stefanie Wehner, Anja K Dörrich, Philipp Ciba, Annegret Wilde, Manja Marz. RNA Biol 2014
12
25

Loss of TOP3B leads to increased R-loop formation and genome instability.
Tao Zhang, Mathew Wallis, Vida Petrovic, Jackie Challis, Paul Kalitsis, Damien F Hudson. Open Biol 2019
25
25


Molecular mechanisms driving transcriptional stress responses.
Anniina Vihervaara, Fabiana M Duarte, John T Lis. Nat Rev Genet 2018
106
25

Homeotic Genes: Clustering, Modularity, and Diversity.
Nikhil Hajirnis, Rakesh K Mishra. Front Cell Dev Biol 2021
2
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.