A citation-based method for searching scientific literature

Richa Nayak, Yasha Hasija. Genomics 2021
Times Cited: 2







List of co-cited articles
4 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
100

Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data.
Tallulah S Andrews, Vladimir Yu Kiselev, Davis McCarthy, Martin Hemberg. Nat Protoc 2021
15
100

A comparison of single-cell trajectory inference methods.
Wouter Saelens, Robrecht Cannoodt, Helena Todorov, Yvan Saeys. Nat Biotechnol 2019
319
100

Current best practices in single-cell RNA-seq analysis: a tutorial.
Malte D Luecken, Fabian J Theis. Mol Syst Biol 2019
346
100

Nuclear RNA-seq of single neurons reveals molecular signatures of activation.
Benjamin Lacar, Sara B Linker, Baptiste N Jaeger, Suguna R Krishnaswami, Jerika J Barron, Martijn J E Kelder, Sarah L Parylak, Apuã C M Paquola, Pratap Venepally, Mark Novotny,[...]. Nat Commun 2016
178
50

Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation.
Clayton E Friedman, Quan Nguyen, Samuel W Lukowski, Abbigail Helfer, Han Sheng Chiu, Jason Miklas, Shiri Levy, Shengbao Suo, Jing-Dong Jackie Han, Pierre Osteil,[...]. Cell Stem Cell 2018
100
50

A human cell atlas of fetal gene expression.
Junyue Cao, Diana R O'Day, Hannah A Pliner, Paul D Kingsley, Mei Deng, Riza M Daza, Michael A Zager, Kimberly A Aldinger, Ronnie Blecher-Gonen, Fan Zhang,[...]. Science 2020
63
50

Challenges in unsupervised clustering of single-cell RNA-seq data.
Vladimir Yu Kiselev, Tallulah S Andrews, Martin Hemberg. Nat Rev Genet 2019
234
50

Cells of the adult human heart.
Monika Litviňuková, Carlos Talavera-López, Henrike Maatz, Daniel Reichart, Catherine L Worth, Eric L Lindberg, Masatoshi Kanda, Krzysztof Polanski, Matthias Heinig, Michael Lee,[...]. Nature 2020
149
50

Cell atlas of the foetal human heart and implications for autoimmune-mediated congenital heart block.
Hemant Suryawanshi, Robert Clancy, Pavel Morozov, Marc K Halushka, Jill P Buyon, Thomas Tuschl. Cardiovasc Res 2020
20
50

Single-cell reconstruction of the adult human heart during heart failure and recovery reveals the cellular landscape underlying cardiac function.
Li Wang, Peng Yu, Bingying Zhou, Jiangping Song, Zheng Li, Mingzhi Zhang, Guangran Guo, Yin Wang, Xiao Chen, Leng Han,[...]. Nat Cell Biol 2020
78
50

Inference and analysis of cell-cell communication using CellChat.
Suoqin Jin, Christian F Guerrero-Juarez, Lihua Zhang, Ivan Chang, Raul Ramos, Chen-Hsiang Kuan, Peggy Myung, Maksim V Plikus, Qing Nie. Nat Commun 2021
65
50


Intrinsic Endocardial Defects Contribute to Hypoplastic Left Heart Syndrome.
Yifei Miao, Lei Tian, Marcy Martin, Sharon L Paige, Francisco X Galdos, Jibiao Li, Alyssa Klein, Hao Zhang, Ning Ma, Yuning Wei,[...]. Cell Stem Cell 2020
21
50


The Human Cell Atlas: from vision to reality.
Orit Rozenblatt-Rosen, Michael J T Stubbington, Aviv Regev, Sarah A Teichmann. Nature 2017
222
50

An Application-Directed, Versatile DNA FISH Platform for Research and Diagnostics.
Eleni Gelali, Joaquin Custodio, Gabriele Girelli, Erik Wernersson, Nicola Crosetto, Magda Bienko. Methods Mol Biol 2018
4
50

Transcriptomic Profiling of the Developing Cardiac Conduction System at Single-Cell Resolution.
William R Goodyer, Benjamin M Beyersdorf, David T Paik, Lei Tian, Guang Li, Jan W Buikema, Orlando Chirikian, Shannon Choi, Sneha Venkatraman, Eliza L Adams,[...]. Circ Res 2019
41
50

Single-Cell Transcriptome Analysis Maps the Developmental Track of the Human Heart.
Yueli Cui, Yuxuan Zheng, Xixi Liu, Liying Yan, Xiaoying Fan, Jun Yong, Yuqiong Hu, Ji Dong, Qingqing Li, Xinglong Wu,[...]. Cell Rep 2019
137
50

Eleven grand challenges in single-cell data science.
David Lähnemann, Johannes Köster, Ewa Szczurek, Davis J McCarthy, Stephanie C Hicks, Mark D Robinson, Catalina A Vallejos, Kieran R Campbell, Niko Beerenwinkel, Ahmed Mahfouz,[...]. Genome Biol 2020
171
50

The lncRNA Hand2os1/Uph locus orchestrates heart development through regulation of precise expression of Hand2.
Xue Han, Jiejie Zhang, Yaxi Liu, Xiaoying Fan, Shanshan Ai, Yingjie Luo, Xin Li, Hengwei Jin, Sai Luo, Hui Zheng,[...]. Development 2019
25
50

Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity.
Markus Wolfien, Anne-Marie Galow, Paula Müller, Madeleine Bartsch, Ronald M Brunner, Tom Goldammer, Olaf Wolkenhauer, Andreas Hoeflich, Robert David. Cells 2020
16
50

Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury.
Nona Farbehi, Ralph Patrick, Aude Dorison, Munira Xaymardan, Vaibhao Janbandhu, Katharina Wystub-Lis, Joshua Wk Ho, Robert E Nordon, Richard P Harvey. Elife 2019
150
50

Single-Cell RNA Sequencing Unveils Unique Transcriptomic Signatures of Organ-Specific Endothelial Cells.
David T Paik, Lei Tian, Ian M Williams, Siyeon Rhee, Hao Zhang, Chun Liu, Ridhima Mishra, Sean M Wu, Kristy Red-Horse, Joseph C Wu. Circulation 2020
31
50

Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types.
Diego Adhemar Jaitin, Ephraim Kenigsberg, Hadas Keren-Shaul, Naama Elefant, Franziska Paul, Irina Zaretsky, Alexander Mildner, Nadav Cohen, Steffen Jung, Amos Tanay,[...]. Science 2014
889
50

Inference and effects of barcode multiplets in droplet-based single-cell assays.
Caleb A Lareau, Sai Ma, Fabiana M Duarte, Jason D Buenrostro. Nat Commun 2020
8
50

Single-Cell Resolution of Temporal Gene Expression during Heart Development.
Daniel M DeLaughter, Alexander G Bick, Hiroko Wakimoto, David McKean, Joshua M Gorham, Irfan S Kathiriya, John T Hinson, Jason Homsy, Jesse Gray, William Pu,[...]. Dev Cell 2016
195
50

Review of Single-Cell RNA Sequencing in the Heart.
Shintaro Yamada, Seitaro Nomura. Int J Mol Sci 2020
5
50

Single-Cell RNA-Seq of the Developing Cardiac Outflow Tract Reveals Convergent Development of the Vascular Smooth Muscle Cells.
Xuanyu Liu, Wen Chen, Wenke Li, Yan Li, James R Priest, Bin Zhou, Jikui Wang, Zhou Zhou. Cell Rep 2019
37
50

RNA velocity of single cells.
Gioele La Manno, Ruslan Soldatov, Amit Zeisel, Emelie Braun, Hannah Hochgerner, Viktor Petukhov, Katja Lidschreiber, Maria E Kastriti, Peter Lönnerberg, Alessandro Furlan,[...]. Nature 2018
732
50

Single-cell analysis of long non-coding RNAs in the developing human neocortex.
Siyuan John Liu, Tomasz J Nowakowski, Alex A Pollen, Jan H Lui, Max A Horlbeck, Frank J Attenello, Daniel He, Jonathan S Weissman, Arnold R Kriegstein, Aaron A Diaz,[...]. Genome Biol 2016
195
50

BNC1 regulates cell heterogeneity in human pluripotent stem cell-derived epicardium.
Laure Gambardella, Sophie A McManus, Victoria Moignard, Derya Sebukhan, Agathe Delaune, Simon Andrews, William G Bernard, Maura A Morrison, Paul R Riley, Berthold Göttgens,[...]. Development 2019
10
50


Spatially Resolved Transcriptomes-Next Generation Tools for Tissue Exploration.
Michaela Asp, Joseph Bergenstråhle, Joakim Lundeberg. Bioessays 2020
65
50

Single-cell genomics: coming of age.
Sten Linnarsson, Sarah A Teichmann. Genome Biol 2016
46
50


Pbx4 limits heart size and fosters arch artery formation by partitioning second heart field progenitors and restricting proliferation.
Andrew Holowiecki, Kelsey Linstrum, Padmapriyadarshini Ravisankar, Kashish Chetal, Nathan Salomonis, Joshua S Waxman. Development 2020
5
50

snRNA-seq reveals a subpopulation of adipocytes that regulates thermogenesis.
Wenfei Sun, Hua Dong, Miroslav Balaz, Michal Slyper, Eugene Drokhlyansky, Georgia Colleluori, Antonio Giordano, Zuzana Kovanicova, Patrik Stefanicka, Lucia Balazova,[...]. Nature 2020
53
50

A single-cell transcriptomic landscape of primate arterial aging.
Weiqi Zhang, Shu Zhang, Pengze Yan, Jie Ren, Moshi Song, Jingyi Li, Jinghui Lei, Huize Pan, Si Wang, Xibo Ma,[...]. Nat Commun 2020
24
50

Droplet-based single cell RNAseq tools: a practical guide.
Robert Salomon, Dominik Kaczorowski, Fatima Valdes-Mora, Robert E Nordon, Adrian Neild, Nona Farbehi, Nenad Bartonicek, David Gallego-Ortega. Lab Chip 2019
29
50

Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning.
Bo Wang, Junjie Zhu, Emma Pierson, Daniele Ramazzotti, Serafim Batzoglou. Nat Methods 2017
208
50

DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors.
Christopher S McGinnis, Lyndsay M Murrow, Zev J Gartner. Cell Syst 2019
239
50


Cardiomyocyte gene programs encoding morphological and functional signatures in cardiac hypertrophy and failure.
Seitaro Nomura, Masahiro Satoh, Takanori Fujita, Tomoaki Higo, Tomokazu Sumida, Toshiyuki Ko, Toshihiro Yamaguchi, Takashige Tobita, Atsuhiko T Naito, Masamichi Ito,[...]. Nat Commun 2018
75
50

Single cardiomyocyte nuclear transcriptomes reveal a lincRNA-regulated de-differentiation and cell cycle stress-response in vivo.
Kelvin See, Wilson L W Tan, Eng How Lim, Zenia Tiang, Li Ting Lee, Peter Y Q Li, Tuan D A Luu, Matthew Ackers-Johnson, Roger S Foo. Nat Commun 2017
63
50

Generalizing RNA velocity to transient cell states through dynamical modeling.
Volker Bergen, Marius Lange, Stefan Peidli, F Alexander Wolf, Fabian J Theis. Nat Biotechnol 2020
202
50

Maturation of heart valve cell populations during postnatal remodeling.
Alexia Hulin, Luis Hortells, M Victoria Gomez-Stallons, Anna O'Donnell, Kashish Chetal, Mike Adam, Patrizio Lancellotti, Cecile Oury, S Steven Potter, Nathan Salomonis,[...]. Development 2019
31
50


Single-Cell Transcriptomic Atlas of Different Human Cardiac Arteries Identifies Cell Types Associated With Vascular Physiology.
Zhan Hu, Wendao Liu, Xiumeng Hua, Xiao Chen, Yuan Chang, Yiqing Hu, Zhenyu Xu, Jiangping Song. Arterioscler Thromb Vasc Biol 2021
5
50

Construction of a human cell landscape at single-cell level.
Xiaoping Han, Ziming Zhou, Lijiang Fei, Huiyu Sun, Renying Wang, Yao Chen, Haide Chen, Jingjing Wang, Huanna Tang, Wenhao Ge,[...]. Nature 2020
181
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.