A citation-based method for searching scientific literature

Gilles Vanwalleghem, Lena Constantin, Ethan K Scott. Front Neural Circuits 2021
Times Cited: 8







List of co-cited articles
56 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
75

CaImAn an open source tool for scalable calcium imaging data analysis.
Andrea Giovannucci, Johannes Friedrich, Pat Gunn, Jérémie Kalfon, Brandon L Brown, Sue Ann Koay, Jiannis Taxidis, Farzaneh Najafi, Jeffrey L Gauthier, Pengcheng Zhou,[...]. Elife 2019
152
62

NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data.
Eftychios A Pnevmatikakis, Andrea Giovannucci. J Neurosci Methods 2017
198
50

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data.
Eftychios A Pnevmatikakis, Daniel Soudry, Yuanjun Gao, Timothy A Machado, Josh Merel, David Pfau, Thomas Reardon, Yu Mu, Clay Lacefield, Weijian Yang,[...]. Neuron 2016
363
50

Accurate spike estimation from noisy calcium signals for ultrafast three-dimensional imaging of large neuronal populations in vivo.
Thomas Deneux, Attila Kaszas, Gergely Szalay, Gergely Katona, Tamás Lakner, Amiram Grinvald, Balázs Rózsa, Ivo Vanzetta. Nat Commun 2016
83
50

Whole-brain activity mapping onto a zebrafish brain atlas.
Owen Randlett, Caroline L Wee, Eva A Naumann, Onyeka Nnaemeka, David Schoppik, James E Fitzgerald, Ruben Portugues, Alix M B Lacoste, Clemens Riegler, Florian Engert,[...]. Nat Methods 2015
207
37

Altered brain-wide auditory networks in a zebrafish model of fragile X syndrome.
Lena Constantin, Rebecca E Poulsen, Leandro A Scholz, Itia A Favre-Bulle, Michael A Taylor, Biao Sun, Geoffrey J Goodhill, Gilles C Vanwalleghem, Ethan K Scott. BMC Biol 2020
13
37

Diffuse light-sheet microscopy for stripe-free calcium imaging of neural populations.
Michael A Taylor, Gilles C Vanwalleghem, Itia A Favre-Bulle, Ethan K Scott. J Biophotonics 2018
18
37

Cellular-Resolution Imaging of Vestibular Processing across the Larval Zebrafish Brain.
Itia A Favre-Bulle, Gilles Vanwalleghem, Michael A Taylor, Halina Rubinsztein-Dunlop, Ethan K Scott. Curr Biol 2018
25
37

Functional Profiles of Visual-, Auditory-, and Water Flow-Responsive Neurons in the Zebrafish Tectum.
Andrew W Thompson, Gilles C Vanwalleghem, Lucy A Heap, Ethan K Scott. Curr Biol 2016
38
37

Spike inference from calcium imaging using sequential Monte Carlo methods.
Joshua T Vogelstein, Brendon O Watson, Adam M Packer, Rafael Yuste, Bruno Jedynak, Liam Paninski. Biophys J 2009
118
37

Benchmarking Spike Rate Inference in Population Calcium Imaging.
Lucas Theis, Philipp Berens, Emmanouil Froudarakis, Jacob Reimer, Miroslav Román Rosón, Tom Baden, Thomas Euler, Andreas S Tolias, Matthias Bethge. Neuron 2016
81
37

The dorsal pallium in zebrafish, Danio rerio (Cyprinidae, Teleostei).
Thomas Mueller, Zhiqiang Dong, Michael A Berberoglu, Su Guo. Brain Res 2011
128
25

Sound generation in zebrafish with Bio-Opto-Acoustics.
Itia A Favre-Bulle, Michael A Taylor, Emmanuel Marquez-Legorreta, Gilles Vanwalleghem, Rebecca E Poulsen, Halina Rubinsztein-Dunlop, Ethan K Scott. Nat Commun 2020
6
33

A profile of auditory-responsive neurons in the larval zebrafish brain.
Gilles Vanwalleghem, Lucy A Heap, Ethan K Scott. J Comp Neurol 2017
20
25

Sensorimotor gating in larval zebrafish.
Harold A Burgess, Michael Granato. J Neurosci 2007
280
25


Brain-Wide Mapping of Water Flow Perception in Zebrafish.
Gilles Vanwalleghem, Kevin Schuster, Michael A Taylor, Itia A Favre-Bulle, Ethan K Scott. J Neurosci 2020
19
25

Integrative whole-brain neuroscience in larval zebrafish.
Gilles C Vanwalleghem, Misha B Ahrens, Ethan K Scott. Curr Opin Neurobiol 2018
41
25

Inference of neuronal network spike dynamics and topology from calcium imaging data.
Henry Lütcke, Felipe Gerhard, Friedemann Zenke, Wulfram Gerstner, Fritjof Helmchen. Front Neural Circuits 2013
46
25

Automated analysis of cellular signals from large-scale calcium imaging data.
Eran A Mukamel, Axel Nimmerjahn, Mark J Schnitzer. Neuron 2009
353
25

Automated whole-cell patch-clamp electrophysiology of neurons in vivo.
Suhasa B Kodandaramaiah, Giovanni Talei Franzesi, Brian Y Chow, Edward S Boyden, Craig R Forest. Nat Methods 2012
110
25


Dendritic encoding of sensory stimuli controlled by deep cortical interneurons.
Masanori Murayama, Enrique Pérez-Garci, Thomas Nevian, Tobias Bock, Walter Senn, Matthew E Larkum. Nature 2009
249
25

Collective dynamics of 'small-world' networks.
D J Watts, S H Strogatz. Nature 1998
25

Imaging large-scale neural activity with cellular resolution in awake, mobile mice.
Daniel A Dombeck, Anton N Khabbaz, Forrest Collman, Thomas L Adelman, David W Tank. Neuron 2007
642
25

Optimization of a GCaMP calcium indicator for neural activity imaging.
Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun,[...]. J Neurosci 2012
737
25

Saturated Reconstruction of a Volume of Neocortex.
Narayanan Kasthuri, Kenneth Jeffrey Hayworth, Daniel Raimund Berger, Richard Lee Schalek, José Angel Conchello, Seymour Knowles-Barley, Dongil Lee, Amelio Vázquez-Reina, Verena Kaynig, Thouis Raymond Jones,[...]. Cell 2015
431
25

Computational processing of neural recordings from calcium imaging data.
Carsen Stringer, Marius Pachitariu. Curr Opin Neurobiol 2019
26
25

SIMA: Python software for analysis of dynamic fluorescence imaging data.
Patrick Kaifosh, Jeffrey D Zaremba, Nathan B Danielson, Attila Losonczy. Front Neuroinform 2014
91
25


Fast nonnegative deconvolution for spike train inference from population calcium imaging.
Joshua T Vogelstein, Adam M Packer, Timothy A Machado, Tanya Sippy, Baktash Babadi, Rafael Yuste, Liam Paninski. J Neurophysiol 2010
215
25

Robustness of Spike Deconvolution for Neuronal Calcium Imaging.
Marius Pachitariu, Carsen Stringer, Kenneth D Harris. J Neurosci 2018
50
25

Fast online deconvolution of calcium imaging data.
Johannes Friedrich, Pengcheng Zhou, Liam Paninski. PLoS Comput Biol 2017
121
25

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
411
25

Community-based benchmarking improves spike rate inference from two-photon calcium imaging data.
Philipp Berens, Jeremy Freeman, Thomas Deneux, Nikolay Chenkov, Thomas McColgan, Artur Speiser, Jakob H Macke, Srinivas C Turaga, Patrick Mineault, Peter Rupprecht,[...]. PLoS Comput Biol 2018
47
25

Glia Accumulate Evidence that Actions Are Futile and Suppress Unsuccessful Behavior.
Yu Mu, Davis V Bennett, Mikail Rubinov, Sujatha Narayan, Chao-Tsung Yang, Masashi Tanimoto, Brett D Mensh, Loren L Looger, Misha B Ahrens. Cell 2019
84
25

Ancestral Circuits for the Coordinated Modulation of Brain State.
Matthew Lovett-Barron, Aaron S Andalman, William E Allen, Sam Vesuna, Isaac Kauvar, Vanessa M Burns, Karl Deisseroth. Cell 2017
75
25

Internal state dynamics shape brainwide activity and foraging behaviour.
João C Marques, Meng Li, Diane Schaak, Drew N Robson, Jennifer M Li. Nature 2020
46
25

Brain-wide Organization of Neuronal Activity and Convergent Sensorimotor Transformations in Larval Zebrafish.
Xiuye Chen, Yu Mu, Yu Hu, Aaron T Kuan, Maxim Nikitchenko, Owen Randlett, Alex B Chen, Jeffery P Gavornik, Haim Sompolinsky, Florian Engert,[...]. Neuron 2018
45
25

Habituation revisited: an updated and revised description of the behavioral characteristics of habituation.
Catharine H Rankin, Thomas Abrams, Robert J Barry, Seema Bhatnagar, David F Clayton, John Colombo, Gianluca Coppola, Mark A Geyer, David L Glanzman, Stephen Marsland,[...]. Neurobiol Learn Mem 2009
592
25

Feeding State Modulates Behavioral Choice and Processing of Prey Stimuli in the Zebrafish Tectum.
Alessandro Filosa, Alison J Barker, Marco Dal Maschio, Herwig Baier. Neuron 2016
72
25

A Visual Pathway for Looming-Evoked Escape in Larval Zebrafish.
Incinur Temizer, Joseph C Donovan, Herwig Baier, Julia L Semmelhack. Curr Biol 2015
115
25



Broad frequency sensitivity and complex neural coding in the larval zebrafish auditory system.
Rebecca E Poulsen, Leandro A Scholz, Lena Constantin, Itia Favre-Bulle, Gilles C Vanwalleghem, Ethan K Scott. Curr Biol 2021
3
66

Genetic single-cell mosaic analysis implicates ephrinB2 reverse signaling in projections from the posterior tectum to the hindbrain in zebrafish.
Tomomi Sato, Takanori Hamaoka, Hidenori Aizawa, Toshihiko Hosoya, Hitoshi Okamoto. J Neurosci 2007
65
25

Molecular classification of zebrafish retinal ganglion cells links genes to cell types to behavior.
Yvonne Kölsch, Joshua Hahn, Anna Sappington, Manuel Stemmer, António M Fernandes, Thomas O Helmbrecht, Shriya Lele, Salwan Butrus, Eva Laurell, Irene Arnold-Ammer,[...]. Neuron 2021
18
25

Distributed Plasticity Drives Visual Habituation Learning in Larval Zebrafish.
Owen Randlett, Martin Haesemeyer, Greg Forkin, Hannah Shoenhard, Alexander F Schier, Florian Engert, Michael Granato. Curr Biol 2019
27
25



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.