Gilles Vanwalleghem, Lena Constantin, Ethan K Scott. Front Neural Circuits 2021
Times Cited: 8
Times Cited: 8
Times Cited
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Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
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CaImAn an open source tool for scalable calcium imaging data analysis.
Andrea Giovannucci, Johannes Friedrich, Pat Gunn, Jérémie Kalfon, Brandon L Brown, Sue Ann Koay, Jiannis Taxidis, Farzaneh Najafi, Jeffrey L Gauthier, Pengcheng Zhou,[...]. Elife 2019
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NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data.
Eftychios A Pnevmatikakis, Andrea Giovannucci. J Neurosci Methods 2017
Eftychios A Pnevmatikakis, Andrea Giovannucci. J Neurosci Methods 2017
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Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data.
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50
Accurate spike estimation from noisy calcium signals for ultrafast three-dimensional imaging of large neuronal populations in vivo.
Thomas Deneux, Attila Kaszas, Gergely Szalay, Gergely Katona, Tamás Lakner, Amiram Grinvald, Balázs Rózsa, Ivo Vanzetta. Nat Commun 2016
Thomas Deneux, Attila Kaszas, Gergely Szalay, Gergely Katona, Tamás Lakner, Amiram Grinvald, Balázs Rózsa, Ivo Vanzetta. Nat Commun 2016
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Whole-brain activity mapping onto a zebrafish brain atlas.
Owen Randlett, Caroline L Wee, Eva A Naumann, Onyeka Nnaemeka, David Schoppik, James E Fitzgerald, Ruben Portugues, Alix M B Lacoste, Clemens Riegler, Florian Engert,[...]. Nat Methods 2015
Owen Randlett, Caroline L Wee, Eva A Naumann, Onyeka Nnaemeka, David Schoppik, James E Fitzgerald, Ruben Portugues, Alix M B Lacoste, Clemens Riegler, Florian Engert,[...]. Nat Methods 2015
37
Altered brain-wide auditory networks in a zebrafish model of fragile X syndrome.
Lena Constantin, Rebecca E Poulsen, Leandro A Scholz, Itia A Favre-Bulle, Michael A Taylor, Biao Sun, Geoffrey J Goodhill, Gilles C Vanwalleghem, Ethan K Scott. BMC Biol 2020
Lena Constantin, Rebecca E Poulsen, Leandro A Scholz, Itia A Favre-Bulle, Michael A Taylor, Biao Sun, Geoffrey J Goodhill, Gilles C Vanwalleghem, Ethan K Scott. BMC Biol 2020
37
Diffuse light-sheet microscopy for stripe-free calcium imaging of neural populations.
Michael A Taylor, Gilles C Vanwalleghem, Itia A Favre-Bulle, Ethan K Scott. J Biophotonics 2018
Michael A Taylor, Gilles C Vanwalleghem, Itia A Favre-Bulle, Ethan K Scott. J Biophotonics 2018
37
Cellular-Resolution Imaging of Vestibular Processing across the Larval Zebrafish Brain.
Itia A Favre-Bulle, Gilles Vanwalleghem, Michael A Taylor, Halina Rubinsztein-Dunlop, Ethan K Scott. Curr Biol 2018
Itia A Favre-Bulle, Gilles Vanwalleghem, Michael A Taylor, Halina Rubinsztein-Dunlop, Ethan K Scott. Curr Biol 2018
37
Functional Profiles of Visual-, Auditory-, and Water Flow-Responsive Neurons in the Zebrafish Tectum.
Andrew W Thompson, Gilles C Vanwalleghem, Lucy A Heap, Ethan K Scott. Curr Biol 2016
Andrew W Thompson, Gilles C Vanwalleghem, Lucy A Heap, Ethan K Scott. Curr Biol 2016
37
Spike inference from calcium imaging using sequential Monte Carlo methods.
Joshua T Vogelstein, Brendon O Watson, Adam M Packer, Rafael Yuste, Bruno Jedynak, Liam Paninski. Biophys J 2009
Joshua T Vogelstein, Brendon O Watson, Adam M Packer, Rafael Yuste, Bruno Jedynak, Liam Paninski. Biophys J 2009
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Benchmarking Spike Rate Inference in Population Calcium Imaging.
Lucas Theis, Philipp Berens, Emmanouil Froudarakis, Jacob Reimer, Miroslav Román Rosón, Tom Baden, Thomas Euler, Andreas S Tolias, Matthias Bethge. Neuron 2016
Lucas Theis, Philipp Berens, Emmanouil Froudarakis, Jacob Reimer, Miroslav Román Rosón, Tom Baden, Thomas Euler, Andreas S Tolias, Matthias Bethge. Neuron 2016
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The dorsal pallium in zebrafish, Danio rerio (Cyprinidae, Teleostei).
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Sound generation in zebrafish with Bio-Opto-Acoustics.
Itia A Favre-Bulle, Michael A Taylor, Emmanuel Marquez-Legorreta, Gilles Vanwalleghem, Rebecca E Poulsen, Halina Rubinsztein-Dunlop, Ethan K Scott. Nat Commun 2020
Itia A Favre-Bulle, Michael A Taylor, Emmanuel Marquez-Legorreta, Gilles Vanwalleghem, Rebecca E Poulsen, Halina Rubinsztein-Dunlop, Ethan K Scott. Nat Commun 2020
33
A profile of auditory-responsive neurons in the larval zebrafish brain.
Gilles Vanwalleghem, Lucy A Heap, Ethan K Scott. J Comp Neurol 2017
Gilles Vanwalleghem, Lucy A Heap, Ethan K Scott. J Comp Neurol 2017
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25
Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain.
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B B Avants, C L Epstein, M Grossman, J C Gee. Med Image Anal 2008
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Brain-Wide Mapping of Water Flow Perception in Zebrafish.
Gilles Vanwalleghem, Kevin Schuster, Michael A Taylor, Itia A Favre-Bulle, Ethan K Scott. J Neurosci 2020
Gilles Vanwalleghem, Kevin Schuster, Michael A Taylor, Itia A Favre-Bulle, Ethan K Scott. J Neurosci 2020
25
Integrative whole-brain neuroscience in larval zebrafish.
Gilles C Vanwalleghem, Misha B Ahrens, Ethan K Scott. Curr Opin Neurobiol 2018
Gilles C Vanwalleghem, Misha B Ahrens, Ethan K Scott. Curr Opin Neurobiol 2018
25
Inference of neuronal network spike dynamics and topology from calcium imaging data.
Henry Lütcke, Felipe Gerhard, Friedemann Zenke, Wulfram Gerstner, Fritjof Helmchen. Front Neural Circuits 2013
Henry Lütcke, Felipe Gerhard, Friedemann Zenke, Wulfram Gerstner, Fritjof Helmchen. Front Neural Circuits 2013
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Automated analysis of cellular signals from large-scale calcium imaging data.
Eran A Mukamel, Axel Nimmerjahn, Mark J Schnitzer. Neuron 2009
Eran A Mukamel, Axel Nimmerjahn, Mark J Schnitzer. Neuron 2009
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Automated whole-cell patch-clamp electrophysiology of neurons in vivo.
Suhasa B Kodandaramaiah, Giovanni Talei Franzesi, Brian Y Chow, Edward S Boyden, Craig R Forest. Nat Methods 2012
Suhasa B Kodandaramaiah, Giovanni Talei Franzesi, Brian Y Chow, Edward S Boyden, Craig R Forest. Nat Methods 2012
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Reconstruction of firing rate changes across neuronal populations by temporally deconvolved Ca2+ imaging.
Emre Yaksi, Rainer W Friedrich. Nat Methods 2006
Emre Yaksi, Rainer W Friedrich. Nat Methods 2006
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Dendritic encoding of sensory stimuli controlled by deep cortical interneurons.
Masanori Murayama, Enrique Pérez-Garci, Thomas Nevian, Tobias Bock, Walter Senn, Matthew E Larkum. Nature 2009
Masanori Murayama, Enrique Pérez-Garci, Thomas Nevian, Tobias Bock, Walter Senn, Matthew E Larkum. Nature 2009
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Imaging large-scale neural activity with cellular resolution in awake, mobile mice.
Daniel A Dombeck, Anton N Khabbaz, Forrest Collman, Thomas L Adelman, David W Tank. Neuron 2007
Daniel A Dombeck, Anton N Khabbaz, Forrest Collman, Thomas L Adelman, David W Tank. Neuron 2007
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Optimization of a GCaMP calcium indicator for neural activity imaging.
Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun,[...]. J Neurosci 2012
Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun,[...]. J Neurosci 2012
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Saturated Reconstruction of a Volume of Neocortex.
Narayanan Kasthuri, Kenneth Jeffrey Hayworth, Daniel Raimund Berger, Richard Lee Schalek, José Angel Conchello, Seymour Knowles-Barley, Dongil Lee, Amelio Vázquez-Reina, Verena Kaynig, Thouis Raymond Jones,[...]. Cell 2015
Narayanan Kasthuri, Kenneth Jeffrey Hayworth, Daniel Raimund Berger, Richard Lee Schalek, José Angel Conchello, Seymour Knowles-Barley, Dongil Lee, Amelio Vázquez-Reina, Verena Kaynig, Thouis Raymond Jones,[...]. Cell 2015
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Computational processing of neural recordings from calcium imaging data.
Carsen Stringer, Marius Pachitariu. Curr Opin Neurobiol 2019
Carsen Stringer, Marius Pachitariu. Curr Opin Neurobiol 2019
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SIMA: Python software for analysis of dynamic fluorescence imaging data.
Patrick Kaifosh, Jeffrey D Zaremba, Nathan B Danielson, Attila Losonczy. Front Neuroinform 2014
Patrick Kaifosh, Jeffrey D Zaremba, Nathan B Danielson, Attila Losonczy. Front Neuroinform 2014
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Interpreting in vivo calcium signals from neuronal cell bodies, axons, and dendrites: a review.
Farhan Ali, Alex C Kwan. Neurophotonics 2020
Farhan Ali, Alex C Kwan. Neurophotonics 2020
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Fast nonnegative deconvolution for spike train inference from population calcium imaging.
Joshua T Vogelstein, Adam M Packer, Timothy A Machado, Tanya Sippy, Baktash Babadi, Rafael Yuste, Liam Paninski. J Neurophysiol 2010
Joshua T Vogelstein, Adam M Packer, Timothy A Machado, Tanya Sippy, Baktash Babadi, Rafael Yuste, Liam Paninski. J Neurophysiol 2010
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Robustness of Spike Deconvolution for Neuronal Calcium Imaging.
Marius Pachitariu, Carsen Stringer, Kenneth D Harris. J Neurosci 2018
Marius Pachitariu, Carsen Stringer, Kenneth D Harris. J Neurosci 2018
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Fast online deconvolution of calcium imaging data.
Johannes Friedrich, Pengcheng Zhou, Liam Paninski. PLoS Comput Biol 2017
Johannes Friedrich, Pengcheng Zhou, Liam Paninski. PLoS Comput Biol 2017
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Sensitive red protein calcium indicators for imaging neural activity.
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Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
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Community-based benchmarking improves spike rate inference from two-photon calcium imaging data.
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Glia Accumulate Evidence that Actions Are Futile and Suppress Unsuccessful Behavior.
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Ancestral Circuits for the Coordinated Modulation of Brain State.
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Internal state dynamics shape brainwide activity and foraging behaviour.
João C Marques, Meng Li, Diane Schaak, Drew N Robson, Jennifer M Li. Nature 2020
João C Marques, Meng Li, Diane Schaak, Drew N Robson, Jennifer M Li. Nature 2020
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Brain-wide Organization of Neuronal Activity and Convergent Sensorimotor Transformations in Larval Zebrafish.
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Habituation revisited: an updated and revised description of the behavioral characteristics of habituation.
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Feeding State Modulates Behavioral Choice and Processing of Prey Stimuli in the Zebrafish Tectum.
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A Visual Pathway for Looming-Evoked Escape in Larval Zebrafish.
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Broad frequency sensitivity and complex neural coding in the larval zebrafish auditory system.
Rebecca E Poulsen, Leandro A Scholz, Lena Constantin, Itia Favre-Bulle, Gilles C Vanwalleghem, Ethan K Scott. Curr Biol 2021
Rebecca E Poulsen, Leandro A Scholz, Lena Constantin, Itia Favre-Bulle, Gilles C Vanwalleghem, Ethan K Scott. Curr Biol 2021
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Genetic single-cell mosaic analysis implicates ephrinB2 reverse signaling in projections from the posterior tectum to the hindbrain in zebrafish.
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Molecular classification of zebrafish retinal ganglion cells links genes to cell types to behavior.
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Distributed Plasticity Drives Visual Habituation Learning in Larval Zebrafish.
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Habituation: a model phenomenon for the study of neuronal substrates of behavior.
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