Kristiyan Kanev, Patrick Roelli, Ming Wu, Christine Wurmser, Mauro Delorenzi, Michael W Pfaffl, Dietmar Zehn. Nat Commun 2021
Times Cited: 4
Times Cited: 4
Times Cited
Times Co-cited
Similarity
Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.
Allon M Klein, Linas Mazutis, Ilke Akartuna, Naren Tallapragada, Adrian Veres, Victor Li, Leonid Peshkin, David A Weitz, Marc W Kirschner. Cell 2015
Allon M Klein, Linas Mazutis, Ilke Akartuna, Naren Tallapragada, Adrian Veres, Victor Li, Leonid Peshkin, David A Weitz, Marc W Kirschner. Cell 2015
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Single-cell RNA counting at allele and isoform resolution using Smart-seq3.
Michael Hagemann-Jensen, Christoph Ziegenhain, Ping Chen, Daniel Ramsköld, Gert-Jan Hendriks, Anton J M Larsson, Omid R Faridani, Rickard Sandberg. Nat Biotechnol 2020
Michael Hagemann-Jensen, Christoph Ziegenhain, Ping Chen, Daniel Ramsköld, Gert-Jan Hendriks, Anton J M Larsson, Omid R Faridani, Rickard Sandberg. Nat Biotechnol 2020
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Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
75
Simultaneous epitope and transcriptome measurement in single cells.
Marlon Stoeckius, Christoph Hafemeister, William Stephenson, Brian Houck-Loomis, Pratip K Chattopadhyay, Harold Swerdlow, Rahul Satija, Peter Smibert. Nat Methods 2017
Marlon Stoeckius, Christoph Hafemeister, William Stephenson, Brian Houck-Loomis, Pratip K Chattopadhyay, Harold Swerdlow, Rahul Satija, Peter Smibert. Nat Methods 2017
50
Highly multiplexed simultaneous detection of RNAs and proteins in single cells.
Andreas P Frei, Felice-Alessio Bava, Eli R Zunder, Elena W Y Hsieh, Shih-Yu Chen, Garry P Nolan, Pier Federico Gherardini. Nat Methods 2016
Andreas P Frei, Felice-Alessio Bava, Eli R Zunder, Elena W Y Hsieh, Shih-Yu Chen, Garry P Nolan, Pier Federico Gherardini. Nat Methods 2016
50
Mass cytometry: technique for real time single cell multitarget immunoassay based on inductively coupled plasma time-of-flight mass spectrometry.
Dmitry R Bandura, Vladimir I Baranov, Olga I Ornatsky, Alexei Antonov, Robert Kinach, Xudong Lou, Serguei Pavlov, Sergey Vorobiev, John E Dick, Scott D Tanner. Anal Chem 2009
Dmitry R Bandura, Vladimir I Baranov, Olga I Ornatsky, Alexei Antonov, Robert Kinach, Xudong Lou, Serguei Pavlov, Sergey Vorobiev, John E Dick, Scott D Tanner. Anal Chem 2009
50
CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq.
Tamar Hashimshony, Naftalie Senderovich, Gal Avital, Agnes Klochendler, Yaron de Leeuw, Leon Anavy, Dave Gennert, Shuqiang Li, Kenneth J Livak, Orit Rozenblatt-Rosen,[...]. Genome Biol 2016
Tamar Hashimshony, Naftalie Senderovich, Gal Avital, Agnes Klochendler, Yaron de Leeuw, Leon Anavy, Dave Gennert, Shuqiang Li, Kenneth J Livak, Orit Rozenblatt-Rosen,[...]. Genome Biol 2016
50
mRNA-Seq whole-transcriptome analysis of a single cell.
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Joint profiling of chromatin accessibility and gene expression in thousands of single cells.
Junyue Cao, Darren A Cusanovich, Vijay Ramani, Delasa Aghamirzaie, Hannah A Pliner, Andrew J Hill, Riza M Daza, Jose L McFaline-Figueroa, Jonathan S Packer, Lena Christiansen,[...]. Science 2018
Junyue Cao, Darren A Cusanovich, Vijay Ramani, Delasa Aghamirzaie, Hannah A Pliner, Andrew J Hill, Riza M Daza, Jose L McFaline-Figueroa, Jonathan S Packer, Lena Christiansen,[...]. Science 2018
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Quantile normalization of single-cell RNA-seq read counts without unique molecular identifiers.
F William Townes, Rafael A Irizarry. Genome Biol 2020
F William Townes, Rafael A Irizarry. Genome Biol 2020
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Comparative Analysis of Single-Cell RNA Sequencing Methods.
Christoph Ziegenhain, Beate Vieth, Swati Parekh, Björn Reinius, Amy Guillaumet-Adkins, Martha Smets, Heinrich Leonhardt, Holger Heyn, Ines Hellmann, Wolfgang Enard. Mol Cell 2017
Christoph Ziegenhain, Beate Vieth, Swati Parekh, Björn Reinius, Amy Guillaumet-Adkins, Martha Smets, Heinrich Leonhardt, Holger Heyn, Ines Hellmann, Wolfgang Enard. Mol Cell 2017
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Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas.
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Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics.
Marlon Stoeckius, Shiwei Zheng, Brian Houck-Loomis, Stephanie Hao, Bertrand Z Yeung, William M Mauck, Peter Smibert, Rahul Satija. Genome Biol 2018
Marlon Stoeckius, Shiwei Zheng, Brian Houck-Loomis, Stephanie Hao, Bertrand Z Yeung, William M Mauck, Peter Smibert, Rahul Satija. Genome Biol 2018
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TCR Redirected T Cells for Cancer Treatment: Achievements, Hurdles, and Goals.
Francesco Manfredi, Beatrice Claudia Cianciotti, Alessia Potenza, Elena Tassi, Maddalena Noviello, Andrea Biondi, Fabio Ciceri, Chiara Bonini, Eliana Ruggiero. Front Immunol 2020
Francesco Manfredi, Beatrice Claudia Cianciotti, Alessia Potenza, Elena Tassi, Maddalena Noviello, Andrea Biondi, Fabio Ciceri, Chiara Bonini, Eliana Ruggiero. Front Immunol 2020
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The Tumor Microenvironment in the Response to Immune Checkpoint Blockade Therapies.
Florent Petitprez, Maxime Meylan, Aurélien de Reyniès, Catherine Sautès-Fridman, Wolf H Fridman. Front Immunol 2020
Florent Petitprez, Maxime Meylan, Aurélien de Reyniès, Catherine Sautès-Fridman, Wolf H Fridman. Front Immunol 2020
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The single-cell transcriptional landscape of mammalian organogenesis.
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Junyue Cao, Malte Spielmann, Xiaojie Qiu, Xingfan Huang, Daniel M Ibrahim, Andrew J Hill, Fan Zhang, Stefan Mundlos, Lena Christiansen, Frank J Steemers,[...]. Nature 2019
25
Defining inflammatory cell states in rheumatoid arthritis joint synovial tissues by integrating single-cell transcriptomics and mass cytometry.
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25
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Comprehensive single-cell transcriptional profiling of a multicellular organism.
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25
The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support.
Anja Irmisch, Ximena Bonilla, Stéphane Chevrier, Kjong-Van Lehmann, Franziska Singer, Nora C Toussaint, Cinzia Esposito, Julien Mena, Emanuela S Milani, Ruben Casanova,[...]. Cancer Cell 2021
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25
Second-Strand Synthesis-Based Massively Parallel scRNA-Seq Reveals Cellular States and Molecular Features of Human Inflammatory Skin Pathologies.
Travis K Hughes, Marc H Wadsworth, Todd M Gierahn, Tran Do, David Weiss, Priscila R Andrade, Feiyang Ma, Bruno J de Andrade Silva, Shuai Shao, Lam C Tsoi,[...]. Immunity 2020
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Multiplexed Peptide-MHC Tetramer Staining with Mass Cytometry.
Mei Ling Leong, Evan W Newell. Methods Mol Biol 2015
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A Highly Scalable Method for Joint Whole-Genome Sequencing and Gene-Expression Profiling of Single Cells.
Vasilios Zachariadis, Huaitao Cheng, Nathanael Andrews, Martin Enge. Mol Cell 2020
Vasilios Zachariadis, Huaitao Cheng, Nathanael Andrews, Martin Enge. Mol Cell 2020
25
DrImpute: imputing dropout events in single cell RNA sequencing data.
Wuming Gong, Il-Youp Kwak, Pruthvi Pota, Naoko Koyano-Nakagawa, Daniel J Garry. BMC Bioinformatics 2018
Wuming Gong, Il-Youp Kwak, Pruthvi Pota, Naoko Koyano-Nakagawa, Daniel J Garry. BMC Bioinformatics 2018
25
Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry.
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25
MARS-seq2.0: an experimental and analytical pipeline for indexed sorting combined with single-cell RNA sequencing.
Hadas Keren-Shaul, Ephraim Kenigsberg, Diego Adhemar Jaitin, Eyal David, Franziska Paul, Amos Tanay, Ido Amit. Nat Protoc 2019
Hadas Keren-Shaul, Ephraim Kenigsberg, Diego Adhemar Jaitin, Eyal David, Franziska Paul, Amos Tanay, Ido Amit. Nat Protoc 2019
25
A Single-Cell Atlas of the Tumor and Immune Ecosystem of Human Breast Cancer.
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25
RNA velocity of single cells.
Gioele La Manno, Ruslan Soldatov, Amit Zeisel, Emelie Braun, Hannah Hochgerner, Viktor Petukhov, Katja Lidschreiber, Maria E Kastriti, Peter Lönnerberg, Alessandro Furlan,[...]. Nature 2018
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25
RNA sequencing: the teenage years.
Rory Stark, Marta Grzelak, James Hadfield. Nat Rev Genet 2019
Rory Stark, Marta Grzelak, James Hadfield. Nat Rev Genet 2019
25
Advancing Cancer Research and Medicine with Single-Cell Genomics.
Bora Lim, Yiyun Lin, Nicholas Navin. Cancer Cell 2020
Bora Lim, Yiyun Lin, Nicholas Navin. Cancer Cell 2020
25
Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.
Kelly Street, Davide Risso, Russell B Fletcher, Diya Das, John Ngai, Nir Yosef, Elizabeth Purdom, Sandrine Dudoit. BMC Genomics 2018
Kelly Street, Davide Risso, Russell B Fletcher, Diya Das, John Ngai, Nir Yosef, Elizabeth Purdom, Sandrine Dudoit. BMC Genomics 2018
25
Multimodal pooled Perturb-CITE-seq screens in patient models define mechanisms of cancer immune evasion.
Chris J Frangieh, Johannes C Melms, Pratiksha I Thakore, Kathryn R Geiger-Schuller, Patricia Ho, Adrienne M Luoma, Brian Cleary, Livnat Jerby-Arnon, Shruti Malu, Michael S Cuoco,[...]. Nat Genet 2021
Chris J Frangieh, Johannes C Melms, Pratiksha I Thakore, Kathryn R Geiger-Schuller, Patricia Ho, Adrienne M Luoma, Brian Cleary, Livnat Jerby-Arnon, Shruti Malu, Michael S Cuoco,[...]. Nat Genet 2021
25
A peripheral immune signature of responsiveness to PD-1 blockade in patients with classical Hodgkin lymphoma.
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Applying high-dimensional single-cell technologies to the analysis of cancer immunotherapy.
Satyen H Gohil, J Bryan Iorgulescu, David A Braun, Derin B Keskin, Kenneth J Livak. Nat Rev Clin Oncol 2021
Satyen H Gohil, J Bryan Iorgulescu, David A Braun, Derin B Keskin, Kenneth J Livak. Nat Rev Clin Oncol 2021
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Using single-cell analysis to predict CAR T cell outcomes.
Sneha Ramakrishna, Nirali N Shah. Nat Med 2020
Sneha Ramakrishna, Nirali N Shah. Nat Med 2020
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A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade.
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Imaging mass cytometry and multiplatform genomics define the phenogenomic landscape of breast cancer.
H Raza Ali, Hartland W Jackson, Vito R T Zanotelli, Esther Danenberg, Jana R Fischer, Helen Bardwell, Elena Provenzano, Oscar M Rueda, Suet-Feung Chin, Samuel Aparicio,[...]. Nat Cancer 2020
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Spatially Resolved Transcriptomes-Next Generation Tools for Tissue Exploration.
Michaela Asp, Joseph Bergenstråhle, Joakim Lundeberg. Bioessays 2020
Michaela Asp, Joseph Bergenstråhle, Joakim Lundeberg. Bioessays 2020
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Somatic mutations and cell identity linked by Genotyping of Transcriptomes.
Anna S Nam, Kyu-Tae Kim, Ronan Chaligne, Franco Izzo, Chelston Ang, Justin Taylor, Robert M Myers, Ghaith Abu-Zeinah, Ryan Brand, Nathaniel D Omans,[...]. Nature 2019
Anna S Nam, Kyu-Tae Kim, Ronan Chaligne, Franco Izzo, Chelston Ang, Justin Taylor, Robert M Myers, Ghaith Abu-Zeinah, Ryan Brand, Nathaniel D Omans,[...]. Nature 2019
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Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma.
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Landscape and Dynamics of Single Immune Cells in Hepatocellular Carcinoma.
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Joint probabilistic modeling of single-cell multi-omic data with totalVI.
Adam Gayoso, Zoë Steier, Romain Lopez, Jeffrey Regier, Kristopher L Nazor, Aaron Streets, Nir Yosef. Nat Methods 2021
Adam Gayoso, Zoë Steier, Romain Lopez, Jeffrey Regier, Kristopher L Nazor, Aaron Streets, Nir Yosef. Nat Methods 2021
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Path toward Precision Oncology: Review of Targeted Therapy Studies and Tools to Aid in Defining "Actionability" of a Molecular Lesion and Patient Management Support.
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Lineage tracking reveals dynamic relationships of T cells in colorectal cancer.
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Spatially resolved transcriptomics and beyond.
Nicola Crosetto, Magda Bienko, Alexander van Oudenaarden. Nat Rev Genet 2015
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A comparison of single-cell trajectory inference methods.
Wouter Saelens, Robrecht Cannoodt, Helena Todorov, Yvan Saeys. Nat Biotechnol 2019
Wouter Saelens, Robrecht Cannoodt, Helena Todorov, Yvan Saeys. Nat Biotechnol 2019
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Microanatomy of the Human Atherosclerotic Plaque by Single-Cell Transcriptomics.
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Generalizing RNA velocity to transient cell states through dynamical modeling.
Volker Bergen, Marius Lange, Stefan Peidli, F Alexander Wolf, Fabian J Theis. Nat Biotechnol 2020
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Microbial single-cell RNA sequencing by split-pool barcoding.
Anna Kuchina, Leandra M Brettner, Luana Paleologu, Charles M Roco, Alexander B Rosenberg, Alberto Carignano, Ryan Kibler, Matthew Hirano, R William DePaolo, Georg Seelig. Science 2021
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High-dimensional single-cell analysis predicts response to anti-PD-1 immunotherapy.
Carsten Krieg, Malgorzata Nowicka, Silvia Guglietta, Sabrina Schindler, Felix J Hartmann, Lukas M Weber, Reinhard Dummer, Mark D Robinson, Mitchell P Levesque, Burkhard Becher. Nat Med 2018
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25
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.