A citation-based method for searching scientific literature

Aida Cardona-Alberich, Manon Tourbez, Sarah F Pearce, Christopher R Sibley. RNA Biol 2021
Times Cited: 3







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Simultaneous epitope and transcriptome measurement in single cells.
Marlon Stoeckius, Christoph Hafemeister, William Stephenson, Brian Houck-Loomis, Pratip K Chattopadhyay, Harold Swerdlow, Rahul Satija, Peter Smibert. Nat Methods 2017
628
33

High throughput gene expression profiling of yeast colonies with microgel-culture Drop-seq.
Leqian Liu, Chiraj K Dalal, Benjamin M Heineike, Adam R Abate. Lab Chip 2019
6
33

Quantitative assessment of protein activity in orphan tissues and single cells using the metaVIPER algorithm.
Hongxu Ding, Eugene F Douglass, Adam M Sonabend, Angeliki Mela, Sayantan Bose, Christian Gonzalez, Peter D Canoll, Peter A Sims, Mariano J Alvarez, Andrea Califano. Nat Commun 2018
27
33

Inhibition of PTTG1 expression by microRNA suppresses proliferation and induces apoptosis of malignant glioma cells.
Xing Su, Jianguo Chen, Lanchun Ni, Wei Shi, Jinlong Shi, Xiaojiang Liu, Yu Zhang, Peipei Gong, Hui Zhu, Qingfeng Huang. Oncol Lett 2016
9
33

BRIE: transcriptome-wide splicing quantification in single cells.
Yuanhua Huang, Guido Sanguinetti. Genome Biol 2017
35
33

Massively parallel single-nucleus RNA-seq with DroNc-seq.
Naomi Habib, Inbal Avraham-Davidi, Anindita Basu, Tyler Burks, Karthik Shekhar, Matan Hofree, Sourav R Choudhury, François Aguet, Ellen Gelfand, Kristin Ardlie,[...]. Nat Methods 2017
321
33

The transcription factor YY1 is a substrate for Polo-like kinase 1 at the G2/M transition of the cell cycle.
Raed Rizkallah, Karen E Alexander, Ari Kassardjian, Bernhard Lüscher, Myra M Hurt. PLoS One 2011
22
33

Improved estimation of cancer dependencies from large-scale RNAi screens using model-based normalization and data integration.
James M McFarland, Zandra V Ho, Guillaume Kugener, Joshua M Dempster, Phillip G Montgomery, Jordan G Bryan, John M Krill-Burger, Thomas M Green, Francisca Vazquez, Jesse S Boehm,[...]. Nat Commun 2018
99
33

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells.
Alex K Shalek, Rahul Satija, Xian Adiconis, Rona S Gertner, Jellert T Gaublomme, Raktima Raychowdhury, Schraga Schwartz, Nir Yosef, Christine Malboeuf, Diana Lu,[...]. Nature 2013
674
33

Comprehensive single-cell transcriptional profiling of a multicellular organism.
Junyue Cao, Jonathan S Packer, Vijay Ramani, Darren A Cusanovich, Chau Huynh, Riza Daza, Xiaojie Qiu, Choli Lee, Scott N Furlan, Frank J Steemers,[...]. Science 2017
424
33

Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding.
Alexander B Rosenberg, Charles M Roco, Richard A Muscat, Anna Kuchina, Paul Sample, Zizhen Yao, Lucas T Graybuck, David J Peeler, Sumit Mukherjee, Wei Chen,[...]. Science 2018
350
33


ZKSCAN1 gene and its related circular RNA (circZKSCAN1) both inhibit hepatocellular carcinoma cell growth, migration, and invasion but through different signaling pathways.
Zhicheng Yao, Jingyan Luo, Kunpeng Hu, Jizong Lin, He Huang, Qiangliang Wang, Peng Zhang, Zhiyong Xiong, Chonghua He, Zejian Huang,[...]. Mol Oncol 2017
193
33

Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types.
Diego Adhemar Jaitin, Ephraim Kenigsberg, Hadas Keren-Shaul, Naama Elefant, Franziska Paul, Irina Zaretsky, Alexander Mildner, Nadav Cohen, Steffen Jung, Amos Tanay,[...]. Science 2014
852
33

Review of Single-Cell RNA Sequencing in the Heart.
Shintaro Yamada, Seitaro Nomura. Int J Mol Sci 2020
4
33

Single-cell barcoding and sequencing using droplet microfluidics.
Rapolas Zilionis, Juozas Nainys, Adrian Veres, Virginia Savova, David Zemmour, Allon M Klein, Linas Mazutis. Nat Protoc 2017
236
33

Plk1-dependent phosphorylation of FoxM1 regulates a transcriptional programme required for mitotic progression.
Zheng Fu, Liviu Malureanu, Jun Huang, Wei Wang, Hao Li, Jan M van Deursen, Donald J Tindall, Junjie Chen. Nat Cell Biol 2008
222
33

A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA.
Blue B Lake, Simone Codeluppi, Yun C Yung, Derek Gao, Jerold Chun, Peter V Kharchenko, Sten Linnarsson, Kun Zhang. Sci Rep 2017
72
33

E2Fs link the control of G1/S and G2/M transcription.
Wencheng Zhu, Paloma H Giangrande, Joseph R Nevins. EMBO J 2004
249
33

Multiplexed quantification of proteins and transcripts in single cells.
Vanessa M Peterson, Kelvin Xi Zhang, Namit Kumar, Jerelyn Wong, Lixia Li, Douglas C Wilson, Renee Moore, Terrill K McClanahan, Svetlana Sadekova, Joel A Klappenbach. Nat Biotechnol 2017
278
33

TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions.
Heonjong Han, Jae-Won Cho, Sangyoung Lee, Ayoung Yun, Hyojin Kim, Dasom Bae, Sunmo Yang, Chan Yeong Kim, Muyoung Lee, Eunbeen Kim,[...]. Nucleic Acids Res 2018
329
33

Single-cell transcriptomic analysis of Alzheimer's disease.
Hansruedi Mathys, Jose Davila-Velderrain, Zhuyu Peng, Fan Gao, Shahin Mohammadi, Jennie Z Young, Madhvi Menon, Liang He, Fatema Abdurrob, Xueqiao Jiang,[...]. Nature 2019
376
33

BRCA1 regulates the G2/M checkpoint by activating Chk1 kinase upon DNA damage.
Ronit I Yarden, Sherly Pardo-Reoyo, Magda Sgagias, Kenneth H Cowan, Lawrence C Brody. Nat Genet 2002
360
33

Altered human oligodendrocyte heterogeneity in multiple sclerosis.
Sarah Jäkel, Eneritz Agirre, Ana Mendanha Falcão, David van Bruggen, Ka Wai Lee, Irene Knuesel, Dheeraj Malhotra, Charles Ffrench-Constant, Anna Williams, Gonçalo Castelo-Branco. Nature 2019
176
33

Identification of genes periodically expressed in the human cell cycle and their expression in tumors.
Michael L Whitfield, Gavin Sherlock, Alok J Saldanha, John I Murray, Catherine A Ball, Karen E Alexander, John C Matese, Charles M Perou, Myra M Hurt, Patrick O Brown,[...]. Mol Biol Cell 2002
33

Nuclear localization of γ-tubulin affects E2F transcriptional activity and S-phase progression.
Greta Höög, Reihaneh Zarrizi, Kristoffer von Stedingk, Kristina Jonsson, Maria Alvarado-Kristensson. FASEB J 2011
34
33

Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain.
Blue B Lake, Song Chen, Brandon C Sos, Jean Fan, Gwendolyn E Kaeser, Yun C Yung, Thu E Duong, Derek Gao, Jerold Chun, Peter V Kharchenko,[...]. Nat Biotechnol 2018
256
33

Development of a facile droplet-based single-cell isolation platform for cultivation and genomic analysis in microorganisms.
Qiang Zhang, Tingting Wang, Qian Zhou, Peng Zhang, Yanhai Gong, Honglei Gou, Jian Xu, Bo Ma. Sci Rep 2017
35
33


Silencing LRH-1 in colon cancer cell lines impairs proliferation and alters gene expression programs.
James R Bayrer, Sridevi Mukkamala, Elena P Sablin, Paul Webb, Robert J Fletterick. Proc Natl Acad Sci U S A 2015
39
33

Computational correction of copy number effect improves specificity of CRISPR-Cas9 essentiality screens in cancer cells.
Robin M Meyers, Jordan G Bryan, James M McFarland, Barbara A Weir, Ann E Sizemore, Han Xu, Neekesh V Dharia, Phillip G Montgomery, Glenn S Cowley, Sasha Pantel,[...]. Nat Genet 2017
475
33

Uncovering SUMOylation dynamics during cell-cycle progression reveals FoxM1 as a key mitotic SUMO target protein.
Joost Schimmel, Karolin Eifler, Jón Otti Sigurðsson, Sabine A G Cuijpers, Ivo A Hendriks, Matty Verlaan-de Vries, Christian D Kelstrup, Chiara Francavilla, René H Medema, Jesper V Olsen,[...]. Mol Cell 2014
123
33

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
33

Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons.
Naomi Habib, Yinqing Li, Matthias Heidenreich, Lukasz Swiech, Inbal Avraham-Davidi, John J Trombetta, Cynthia Hession, Feng Zhang, Aviv Regev. Science 2016
228
33

Massively parallel nanowell-based single-cell gene expression profiling.
Leonard D Goldstein, Ying-Jiun Jasmine Chen, Jude Dunne, Alain Mir, Hermann Hubschle, Joseph Guillory, Wenlin Yuan, Jingli Zhang, Jeremy Stinson, Bijay Jaiswal,[...]. BMC Genomics 2017
48
33

MYCN-mediated transcriptional repression in neuroblastoma: the other side of the coin.
Samuele Gherardi, Emanuele Valli, Daniela Erriquez, Giovanni Perini. Front Oncol 2013
29
33

Promoter-bound METTL3 maintains myeloid leukaemia by m6A-dependent translation control.
Isaia Barbieri, Konstantinos Tzelepis, Luca Pandolfini, Junwei Shi, Gonzalo Millán-Zambrano, Samuel C Robson, Demetrios Aspris, Valentina Migliori, Andrew J Bannister, Namshik Han,[...]. Nature 2017
362
33

A role for mitotic bookmarking of SOX2 in pluripotency and differentiation.
Cédric Deluz, Elias T Friman, Daniel Strebinger, Alexander Benke, Mahé Raccaud, Andrea Callegari, Marion Leleu, Suliana Manley, David M Suter. Genes Dev 2016
58
33

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
33

A practical guide to hydrogels for cell culture.
Steven R Caliari, Jason A Burdick. Nat Methods 2016
509
33

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.
Daniel Ramsköld, Shujun Luo, Yu-Chieh Wang, Robin Li, Qiaolin Deng, Omid R Faridani, Gregory A Daniels, Irina Khrebtukova, Jeanne F Loring, Louise C Laurent,[...]. Nat Biotechnol 2012
788
33

Functional characterization of somatic mutations in cancer using network-based inference of protein activity.
Mariano J Alvarez, Yao Shen, Federico M Giorgi, Alexander Lachmann, B Belinda Ding, B Hilda Ye, Andrea Califano. Nat Genet 2016
225
33

Hes4: A potential prognostic biomarker for newly diagnosed patients with high-grade osteosarcoma.
Madonna McManus, Eugenie Kleinerman, Yanwen Yang, John Andrew Livingston, Jared Mortus, Rocio Rivera, Patrick Zweidler-McKay, Keri Schadler. Pediatr Blood Cancer 2017
6
33

Targeting LRH‑1 in hepatoblastoma cell lines causes decreased proliferation.
Jingling Jin, Junliang Jin, Sarah E Woodfield, Roma H Patel, Nan Ge Jin, Yan Shi, Bin Liu, Wenjing Sun, Xiangmei Chen, Yang Yu,[...]. Oncol Rep 2019
8
33

Massively parallel digital transcriptional profiling of single cells.
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
33

Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq.
Saiful Islam, Una Kjällquist, Annalena Moliner, Pawel Zajac, Jian-Bing Fan, Peter Lönnerberg, Sten Linnarsson. Genome Res 2011
474
33

A Unique Microglia Type Associated with Restricting Development of Alzheimer's Disease.
Hadas Keren-Shaul, Amit Spinrad, Assaf Weiner, Orit Matcovitch-Natan, Raz Dvir-Szternfeld, Tyler K Ulland, Eyal David, Kuti Baruch, David Lara-Astaiso, Beata Toth,[...]. Cell 2017
33

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.
Allon M Klein, Linas Mazutis, Ilke Akartuna, Naren Tallapragada, Adrian Veres, Victor Li, Leonid Peshkin, David A Weitz, Marc W Kirschner. Cell 2015
33

Single-Cell RNA-Sequencing of Peripheral Blood Mononuclear Cells with ddSEQ.
Shaheen Khan, Kelly A Kaihara. Methods Mol Biol 2019
5
33

Krüppel-like factor 5 promotes mitosis by activating the cyclin B1/Cdc2 complex during oncogenic Ras-mediated transformation.
Mandayam O Nandan, Sengthong Chanchevalap, W Brian Dalton, Vincent W Yang. FEBS Lett 2005
68
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.