A citation-based method for searching scientific literature

Katja Lidschreiber, Lisa A Jung, Henrik von der Emde, Kashyap Dave, Jussi Taipale, Patrick Cramer, Michael Lidschreiber. Mol Syst Biol 2021
Times Cited: 5







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


TMPRSS2 and furin are both essential for proteolytic activation of SARS-CoV-2 in human airway cells.
Dorothea Bestle, Miriam Ruth Heindl, Hannah Limburg, Thuy Van Lam van, Oliver Pilgram, Hong Moulton, David A Stein, Kornelia Hardes, Markus Eickmann, Olga Dolnik,[...]. Life Sci Alliance 2020
235
20

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
20

Reovirus intermediate subviral particles constitute a strategy to infect intestinal epithelial cells by exploiting TGF-β dependent pro-survival signaling.
Megan L Stanifer, Anja Rippert, Alexander Kazakov, Joschka Willemsen, Delia Bucher, Silke Bender, Ralf Bartenschlager, Marco Binder, Steeve Boulant. Cell Microbiol 2016
22
20

SARS-CoV-2 structure and replication characterized by in situ cryo-electron tomography.
Steffen Klein, Mirko Cortese, Sophie L Winter, Moritz Wachsmuth-Melm, Christopher J Neufeldt, Berati Cerikan, Megan L Stanifer, Steeve Boulant, Ralf Bartenschlager, Petr Chlanda. Nat Commun 2020
152
20

Impaired type I interferon activity and inflammatory responses in severe COVID-19 patients.
Jérôme Hadjadj, Nader Yatim, Laura Barnabei, Aurélien Corneau, Jeremy Boussier, Nikaïa Smith, Hélène Péré, Bruno Charbit, Vincent Bondet, Camille Chenevier-Gobeaux,[...]. Science 2020
20

COVID-19: consider cytokine storm syndromes and immunosuppression.
Puja Mehta, Daniel F McAuley, Michael Brown, Emilie Sanchez, Rachel S Tattersall, Jessica J Manson. Lancet 2020
20

Single-Cell RNA Expression Profiling of ACE2, the Receptor of SARS-CoV-2.
Yu Zhao, Zixian Zhao, Yujia Wang, Yueqing Zhou, Yu Ma, Wei Zuo. Am J Respir Crit Care Med 2020
406
20

Replication of human noroviruses in stem cell-derived human enteroids.
Khalil Ettayebi, Sue E Crawford, Kosuke Murakami, James R Broughman, Umesh Karandikar, Victoria R Tenge, Frederick H Neill, Sarah E Blutt, Xi-Lei Zeng, Lin Qu,[...]. Science 2016
665
20

ilastik: interactive machine learning for (bio)image analysis.
Stuart Berg, Dominik Kutra, Thorben Kroeger, Christoph N Straehle, Bernhard X Kausler, Carsten Haubold, Martin Schiegg, Janez Ales, Thorsten Beier, Markus Rudy,[...]. Nat Methods 2019
330
20

SARS-CoV-2 receptor ACE2 and TMPRSS2 are primarily expressed in bronchial transient secretory cells.
Soeren Lukassen, Robert Lorenz Chua, Timo Trefzer, Nicolas C Kahn, Marc A Schneider, Thomas Muley, Hauke Winter, Michael Meister, Carmen Veith, Agnes W Boots,[...]. EMBO J 2020
482
20

Asymmetric distribution of TLR3 leads to a polarized immune response in human intestinal epithelial cells.
Megan L Stanifer, Markus Mukenhirn, Stephanie Muenchau, Kalliopi Pervolaraki, Takashi Kanaya, Dorothee Albrecht, Charlotte Odendall, Thomas Hielscher, Volker Haucke, Jonathan C Kagan,[...]. Nat Microbiol 2020
18
20

Extrapulmonary manifestations of COVID-19.
Aakriti Gupta, Mahesh V Madhavan, Kartik Sehgal, Nandini Nair, Shiwani Mahajan, Tejasav S Sehrawat, Behnood Bikdeli, Neha Ahluwalia, John C Ausiello, Elaine Y Wan,[...]. Nat Med 2020
872
20

Longitudinal analyses reveal immunological misfiring in severe COVID-19.
Carolina Lucas, Patrick Wong, Jon Klein, Tiago B R Castro, Julio Silva, Maria Sundaram, Mallory K Ellingson, Tianyang Mao, Ji Eun Oh, Benjamin Israelow,[...]. Nature 2020
655
20

Infection of bat and human intestinal organoids by SARS-CoV-2.
Jie Zhou, Cun Li, Xiaojuan Liu, Man Chun Chiu, Xiaoyu Zhao, Dong Wang, Yuxuan Wei, Andrew Lee, Anna Jinxia Zhang, Hin Chu,[...]. Nat Med 2020
231
20


Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis.
Christopher S Smillie, Moshe Biton, Jose Ordovas-Montanes, Keri M Sullivan, Grace Burgin, Daniel B Graham, Rebecca H Herbst, Noga Rogel, Michal Slyper, Julia Waldman,[...]. Cell 2019
237
20

Importance of Type I and III Interferons at Respiratory and Intestinal Barrier Surfaces.
Megan L Stanifer, Cuncai Guo, Patricio Doldan, Steeve Boulant. Front Immunol 2020
15
20

COVID-19 severity correlates with airway epithelium-immune cell interactions identified by single-cell analysis.
Robert Lorenz Chua, Soeren Lukassen, Saskia Trump, Bianca P Hennig, Daniel Wendisch, Fabian Pott, Olivia Debnath, Loreen Thürmann, Florian Kurth, Maria Theresa Völker,[...]. Nat Biotechnol 2020
338
20

Location-specific cell identity rather than exposure to GI microbiota defines many innate immune signalling cascades in the gut epithelium.
Ozge Kayisoglu, Franziska Weiss, Carolin Niklas, Isabella Pierotti, Malvika Pompaiah, Nina Wallaschek, Christoph-Thomas Germer, Armin Wiegering, Sina Bartfeld. Gut 2021
17
20

Retinoic Acid and Lymphotoxin Signaling Promote Differentiation of Human Intestinal M Cells.
Siyuan Ding, Yanhua Song, Kevin F Brulois, Junliang Pan, Julia Y Co, Lili Ren, Ningguo Feng, Linda L Yasukawa, Liliana Sánchez-Tacuba, Jonathan E Wosen,[...]. Gastroenterology 2020
17
20

Prolonged viral shedding in feces of pediatric patients with coronavirus disease 2019.
Yu-Han Xing, Wei Ni, Qin Wu, Wen-Jie Li, Guo-Ju Li, Wen-Di Wang, Jian-Ning Tong, Xiu-Feng Song, Gary Wing-Kin Wong, Quan-Sheng Xing. J Microbiol Immunol Infect 2020
151
20

MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data.
Greg Finak, Andrew McDavid, Masanao Yajima, Jingyuan Deng, Vivian Gersuk, Alex K Shalek, Chloe K Slichter, Hannah W Miller, M Juliana McElrath, Martin Prlic,[...]. Genome Biol 2015
654
20

Differential Regulation of Type I and Type III Interferon Signaling.
Megan L Stanifer, Kalliopi Pervolaraki, Steeve Boulant. Int J Mol Sci 2019
56
20

Single Virus Targeting Multiple Organs: What We Know and Where We Are Heading?
Ashish Prasad, Manoj Prasad. Front Med (Lausanne) 2020
14
20

Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes.
Neal G Ravindra, Mia Madel Alfajaro, Victor Gasque, Nicholas C Huston, Han Wan, Klara Szigeti-Buck, Yuki Yasumoto, Allison M Greaney, Victoria Habet, Ryan D Chow,[...]. PLoS Biol 2021
44
20

Complex Immune Dysregulation in COVID-19 Patients with Severe Respiratory Failure.
Evangelos J Giamarellos-Bourboulis, Mihai G Netea, Nikoletta Rovina, Karolina Akinosoglou, Anastasia Antoniadou, Nikolaos Antonakos, Georgia Damoraki, Theologia Gkavogianni, Maria-Evangelia Adami, Paraskevi Katsaounou,[...]. Cell Host Microbe 2020
907
20

destiny: diffusion maps for large-scale single-cell data in R.
Philipp Angerer, Laleh Haghverdi, Maren Büttner, Fabian J Theis, Carsten Marr, Florian Buettner. Bioinformatics 2016
217
20

SARS-CoV-2 productively infects human gut enterocytes.
Mart M Lamers, Joep Beumer, Jelte van der Vaart, Kèvin Knoops, Jens Puschhof, Tim I Breugem, Raimond B G Ravelli, J Paul van Schayck, Anna Z Mykytyn, Hans Q Duimel,[...]. Science 2020
696
20

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
20

Virological assessment of hospitalized patients with COVID-2019.
Roman Wölfel, Victor M Corman, Wolfgang Guggemos, Michael Seilmaier, Sabine Zange, Marcel A Müller, Daniela Niemeyer, Terry C Jones, Patrick Vollmar, Camilla Rothe,[...]. Nature 2020
20

Astrovirus replication in human intestinal enteroids reveals multi-cellular tropism and an intricate host innate immune landscape.
Abimbola O Kolawole, Carmen Mirabelli, David R Hill, Sophia A Svoboda, Andrew B Janowski, Karla D Passalacqua, Benancio N Rodriguez, Michael K Dame, Pamela Freiden, Ryan P Berger,[...]. PLoS Pathog 2019
33
20

Interferons and viruses induce a novel truncated ACE2 isoform and not the full-length SARS-CoV-2 receptor.
Olusegun O Onabajo, A Rouf Banday, Megan L Stanifer, Wusheng Yan, Adeola Obajemu, Deanna M Santer, Oscar Florez-Vargas, Helen Piontkivska, Joselin M Vargas, Timothy J Ring,[...]. Nat Genet 2020
98
20

A scalable SCENIC workflow for single-cell gene regulatory network analysis.
Bram Van de Sande, Christopher Flerin, Kristofer Davie, Maxime De Waegeneer, Gert Hulselmans, Sara Aibar, Ruth Seurinck, Wouter Saelens, Robrecht Cannoodt, Quentin Rouchon,[...]. Nat Protoc 2020
48
20

Activation and evasion of type I interferon responses by SARS-CoV-2.
Xiaobo Lei, Xiaojing Dong, Ruiyi Ma, Wenjing Wang, Xia Xiao, Zhongqin Tian, Conghui Wang, Ying Wang, Li Li, Lili Ren,[...]. Nat Commun 2020
302
20

Critical Role of Type III Interferon in Controlling SARS-CoV-2 Infection in Human Intestinal Epithelial Cells.
Megan L Stanifer, Carmon Kee, Mirko Cortese, Camila Metz Zumaran, Sergio Triana, Markus Mukenhirn, Hans-Georg Kraeusslich, Theodore Alexandrov, Ralf Bartenschlager, Steeve Boulant. Cell Rep 2020
130
20

Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition.
Masayuki Fujii, Mami Matano, Kohta Toshimitsu, Ai Takano, Yohei Mikami, Shingo Nishikori, Shinya Sugimoto, Toshiro Sato. Cell Stem Cell 2018
129
20

Evidence for Gastrointestinal Infection of SARS-CoV-2.
Fei Xiao, Meiwen Tang, Xiaobin Zheng, Ye Liu, Xiaofeng Li, Hong Shan. Gastroenterology 2020
20

Heightened Innate Immune Responses in the Respiratory Tract of COVID-19 Patients.
Zhuo Zhou, Lili Ren, Li Zhang, Jiaxin Zhong, Yan Xiao, Zhilong Jia, Li Guo, Jing Yang, Chun Wang, Shuai Jiang,[...]. Cell Host Microbe 2020
411
20


SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes.
Waradon Sungnak, Ni Huang, Christophe Bécavin, Marijn Berg, Rachel Queen, Monika Litvinukova, Carlos Talavera-López, Henrike Maatz, Daniel Reichart, Fotios Sampaziotis,[...]. Nat Med 2020
20

Integrative Imaging Reveals SARS-CoV-2-Induced Reshaping of Subcellular Morphologies.
Mirko Cortese, Ji-Young Lee, Berati Cerikan, Christopher J Neufeldt, Viola M J Oorschot, Sebastian Köhrer, Julian Hennies, Nicole L Schieber, Paolo Ronchi, Giulia Mizzon,[...]. Cell Host Microbe 2020
39
20


Clinical and immunological features of severe and moderate coronavirus disease 2019.
Guang Chen, Di Wu, Wei Guo, Yong Cao, Da Huang, Hongwu Wang, Tao Wang, Xiaoyun Zhang, Huilong Chen, Haijing Yu,[...]. J Clin Invest 2020
20

Single cell RNA sequencing of 13 human tissues identify cell types and receptors of human coronaviruses.
Furong Qi, Shen Qian, Shuye Zhang, Zheng Zhang. Biochem Biophys Res Commun 2020
398
20

TMPRSS2 and TMPRSS4 promote SARS-CoV-2 infection of human small intestinal enterocytes.
Ruochen Zang, Maria Florencia Gomez Castro, Broc T McCune, Qiru Zeng, Paul W Rothlauf, Naomi M Sonnek, Zhuoming Liu, Kevin F Brulois, Xin Wang, Harry B Greenberg,[...]. Sci Immunol 2020
399
20

SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor.
Markus Hoffmann, Hannah Kleine-Weber, Simon Schroeder, Nadine Krüger, Tanja Herrler, Sandra Erichsen, Tobias S Schiergens, Georg Herrler, Nai-Huei Wu, Andreas Nitsche,[...]. Cell 2020
20

CellProfiler 3.0: Next-generation image processing for biology.
Claire McQuin, Allen Goodman, Vasiliy Chernyshev, Lee Kamentsky, Beth A Cimini, Kyle W Karhohs, Minh Doan, Liya Ding, Susanne M Rafelski, Derek Thirstrup,[...]. PLoS Biol 2018
492
20

Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19.
Daniel Blanco-Melo, Benjamin E Nilsson-Payant, Wen-Chun Liu, Skyler Uhl, Daisy Hoagland, Rasmus Møller, Tristan X Jordan, Kohei Oishi, Maryline Panis, David Sachs,[...]. Cell 2020
20

SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues.
Carly G K Ziegler, Samuel J Allon, Sarah K Nyquist, Ian M Mbano, Vincent N Miao, Constantine N Tzouanas, Yuming Cao, Ashraf S Yousif, Julia Bals, Blake M Hauser,[...]. Cell 2020
20

Targeted Perturb-seq enables genome-scale genetic screens in single cells.
Daniel Schraivogel, Andreas R Gschwind, Jennifer H Milbank, Daniel R Leonce, Petra Jakob, Lukas Mathur, Jan O Korbel, Christoph A Merten, Lars Velten, Lars M Steinmetz. Nat Methods 2020
22
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.