Saikat Pal, Sandip Paul. Phys Chem Chem Phys 2021
Times Cited: 2
Times Cited: 2
Times Cited
Times Co-cited
Similarity
100
PACKMOL: a package for building initial configurations for molecular dynamics simulations.
L Martínez, R Andrade, E G Birgin, J M Martínez. J Comput Chem 2009
L Martínez, R Andrade, E G Birgin, J M Martínez. J Comput Chem 2009
100
Determination of alkali and halide monovalent ion parameters for use in explicitly solvated biomolecular simulations.
In Suk Joung, Thomas E Cheatham. J Phys Chem B 2008
In Suk Joung, Thomas E Cheatham. J Phys Chem B 2008
100
Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis.
Phuong H Nguyen, Ayyalusamy Ramamoorthy, Bikash R Sahoo, Jie Zheng, Peter Faller, John E Straub, Laura Dominguez, Joan-Emma Shea, Nikolay V Dokholyan, Alfonso De Simone,[...]. Chem Rev 2021
Phuong H Nguyen, Ayyalusamy Ramamoorthy, Bikash R Sahoo, Jie Zheng, Peter Faller, John E Straub, Laura Dominguez, Joan-Emma Shea, Nikolay V Dokholyan, Alfonso De Simone,[...]. Chem Rev 2021
100
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.
W Kabsch, C Sander. Biopolymers 1983
W Kabsch, C Sander. Biopolymers 1983
100
ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB.
James A Maier, Carmenza Martinez, Koushik Kasavajhala, Lauren Wickstrom, Kevin E Hauser, Carlos Simmerling. J Chem Theory Comput 2015
James A Maier, Carmenza Martinez, Koushik Kasavajhala, Lauren Wickstrom, Kevin E Hauser, Carlos Simmerling. J Chem Theory Comput 2015
100
Theoretical investigation of conformational deviation of the human parallel telomeric G-quadruplex DNA in the presence of different salt concentrations and temperatures under confinement.
Saikat Pal, Sandip Paul. Phys Chem Chem Phys 2021
Saikat Pal, Sandip Paul. Phys Chem Chem Phys 2021
100
Convergence of Sampling Kirkwood-Buff Integrals of Aqueous Solutions with Molecular Dynamics Simulations.
Pritam Ganguly, Nico F A van der Vegt. J Chem Theory Comput 2013
Pritam Ganguly, Nico F A van der Vegt. J Chem Theory Comput 2013
100
Distinct and Nonadditive Effects of Urea and Guanidinium Chloride on Peptide Solvation.
Pritam Ganguly, Joan-Emma Shea. J Phys Chem Lett 2019
Pritam Ganguly, Joan-Emma Shea. J Phys Chem Lett 2019
100
Different Force Fields Give Rise to Different Amyloid Aggregation Pathways in Molecular Dynamics Simulations.
Suman Samantray, Feng Yin, Batuhan Kav, Birgit Strodel. J Chem Inf Model 2020
Suman Samantray, Feng Yin, Batuhan Kav, Birgit Strodel. J Chem Inf Model 2020
100
Potential of ATP toward Prevention of hIAPP Oligomerization and Destabilization of hIAPP Protofibrils: An In Silico Perspective.
Rituparna Roy, Sandip Paul. J Phys Chem B 2021
Rituparna Roy, Sandip Paul. J Phys Chem B 2021
100
PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data.
Daniel R Roe, Thomas E Cheatham. J Chem Theory Comput 2013
Daniel R Roe, Thomas E Cheatham. J Chem Theory Comput 2013
100
Molecular Dynamics Simulations Reveal the Inhibitory Mechanism of Dopamine against Human Islet Amyloid Polypeptide (hIAPP) Aggregation and Its Destabilization Effect on hIAPP Protofibrils.
Zenghui Lao, Yujie Chen, Yiming Tang, Guanghong Wei. ACS Chem Neurosci 2019
Zenghui Lao, Yujie Chen, Yiming Tang, Guanghong Wei. ACS Chem Neurosci 2019
100
Trimethylamine N-oxide Counteracts Urea Denaturation by Inhibiting Protein-Urea Preferential Interaction.
Pritam Ganguly, Pablo Boserman, Nico F A van der Vegt, Joan-Emma Shea. J Am Chem Soc 2018
Pritam Ganguly, Pablo Boserman, Nico F A van der Vegt, Joan-Emma Shea. J Am Chem Soc 2018
100
Potential of a Natural Deep Eutectic Solvent, Glyceline, in the Thermal Stability of the Trp-Cage Mini-protein.
Saikat Pal, Rituparna Roy, Sandip Paul. J Phys Chem B 2020
Saikat Pal, Rituparna Roy, Sandip Paul. J Phys Chem B 2020
100
A single-point mutation converts the highly amyloidogenic human islet amyloid polypeptide into a potent fibrillization inhibitor.
Andisheh Abedini, Fanling Meng, Daniel P Raleigh. J Am Chem Soc 2007
Andisheh Abedini, Fanling Meng, Daniel P Raleigh. J Am Chem Soc 2007
50
A Hot-Segment-Based Approach for the Design of Cross-Amyloid Interaction Surface Mimics as Inhibitors of Amyloid Self-Assembly.
Erika Andreetto, Eleni Malideli, Li-Mei Yan, Michael Kracklauer, Karine Farbiarz, Marianna Tatarek-Nossol, Gerhard Rammes, Elke Prade, Tatjana Neumüller, Andrea Caporale,[...]. Angew Chem Int Ed Engl 2015
Erika Andreetto, Eleni Malideli, Li-Mei Yan, Michael Kracklauer, Karine Farbiarz, Marianna Tatarek-Nossol, Gerhard Rammes, Elke Prade, Tatjana Neumüller, Andrea Caporale,[...]. Angew Chem Int Ed Engl 2015
50
Molecular mechanism of the inhibition and remodeling of human islet amyloid polypeptide (hIAPP(1-37)) oligomer by resveratrol from molecular dynamics simulation.
Qianqian Wang, Lulu Ning, Yuzhen Niu, Huanxiang Liu, Xiaojun Yao. J Phys Chem B 2015
Qianqian Wang, Lulu Ning, Yuzhen Niu, Huanxiang Liu, Xiaojun Yao. J Phys Chem B 2015
50
Cryo-EM structure of islet amyloid polypeptide fibrils reveals similarities with amyloid-β fibrils.
Christine Röder, Tatsiana Kupreichyk, Lothar Gremer, Luisa U Schäfer, Karunakar R Pothula, Raimond B G Ravelli, Dieter Willbold, Wolfgang Hoyer, Gunnar F Schröder. Nat Struct Mol Biol 2020
Christine Röder, Tatsiana Kupreichyk, Lothar Gremer, Luisa U Schäfer, Karunakar R Pothula, Raimond B G Ravelli, Dieter Willbold, Wolfgang Hoyer, Gunnar F Schröder. Nat Struct Mol Biol 2020
50
Hydrogen Bond Properties and Dynamics of Liquid-Vapor Interfaces of Aqueous Methanol Solutions.
Sandip Paul, Amalendu Chandra. J Chem Theory Comput 2005
Sandip Paul, Amalendu Chandra. J Chem Theory Comput 2005
50
A hIAPP-derived all-D-amino-acid inhibits hIAPP fibrillation efficiently at membrane surface by targeting α-helical oligomeric intermediates.
Li Wang, Liyan Lei, Yang Li, Liping Wang, Fei Li. FEBS Lett 2014
Li Wang, Liyan Lei, Yang Li, Liping Wang, Fei Li. FEBS Lett 2014
50
Validation of a novel molecular dynamics simulation approach for lipophilic drug incorporation into polymer micelles.
Aliya O Kasimova, Giovanni M Pavan, Andrea Danani, Karine Mondon, Andrea Cristiani, Leonardo Scapozza, Robert Gurny, Michael Möller. J Phys Chem B 2012
Aliya O Kasimova, Giovanni M Pavan, Andrea Danani, Karine Mondon, Andrea Cristiani, Leonardo Scapozza, Robert Gurny, Michael Möller. J Phys Chem B 2012
50
Conformationally restricted short peptides inhibit human islet amyloid polypeptide (hIAPP) fibrillization.
Aseem Mishra, Anurag Misra, T Sri Vaishnavi, Chaitanya Thota, Madhvi Gupta, Suryanarayanarao Ramakumar, Virander Singh Chauhan. Chem Commun (Camb) 2013
Aseem Mishra, Anurag Misra, T Sri Vaishnavi, Chaitanya Thota, Madhvi Gupta, Suryanarayanarao Ramakumar, Virander Singh Chauhan. Chem Commun (Camb) 2013
50
The Inhibitory Effect of Hydroxylated Carbon Nanotubes on the Aggregation of Human Islet Amyloid Polypeptide Revealed by a Combined Computational and Experimental Study.
Yuxiang Mo, Sayanti Brahmachari, Jiangtao Lei, Sharon Gilead, Yiming Tang, Ehud Gazit, Guanghong Wei. ACS Chem Neurosci 2018
Yuxiang Mo, Sayanti Brahmachari, Jiangtao Lei, Sharon Gilead, Yiming Tang, Ehud Gazit, Guanghong Wei. ACS Chem Neurosci 2018
50
Selection of D-amino-acid peptides that bind to Alzheimer's disease amyloid peptide abeta1-42 by mirror image phage display.
Katja Wiesehan, Katrin Buder, Reinhold P Linke, Stephan Patt, Matthias Stoldt, Eberhard Unger, Bettina Schmitt, Enrico Bucci, Dieter Willbold. Chembiochem 2003
Katja Wiesehan, Katrin Buder, Reinhold P Linke, Stephan Patt, Matthias Stoldt, Eberhard Unger, Bettina Schmitt, Enrico Bucci, Dieter Willbold. Chembiochem 2003
50
Tanshinones inhibit hIAPP aggregation, disaggregate preformed hIAPP fibrils, and protect cultured cells.
Baiping Ren, Yonglan Liu, Yanxian Zhang, Mingzhen Zhang, Yan Sun, Guizhao Liang, Jianxiong Xu, Jie Zheng. J Mater Chem B 2018
Baiping Ren, Yonglan Liu, Yanxian Zhang, Mingzhen Zhang, Yan Sun, Guizhao Liang, Jianxiong Xu, Jie Zheng. J Mater Chem B 2018
50
Computational insights into the inhibition and destabilization of morin on the oligomer of full-length human islet amyloid polypeptide.
Qianqian Wang, Shuangyan Zhou, Wei Wei, Xiaojun Yao, Huanxiang Liu, Zhide Hu. Phys Chem Chem Phys 2015
Qianqian Wang, Shuangyan Zhou, Wei Wei, Xiaojun Yao, Huanxiang Liu, Zhide Hu. Phys Chem Chem Phys 2015
50
Targeting Human Islet Amyloid Polypeptide Aggregation and Toxicity in Type 2 Diabetes: An Overview of Peptide-Based Inhibitors.
Rajneet Kaur Saini, Deepti Goyal, Bhupesh Goyal. Chem Res Toxicol 2020
Rajneet Kaur Saini, Deepti Goyal, Bhupesh Goyal. Chem Res Toxicol 2020
50
Introduction and Fundamentals of Human Islet Amyloid Polypeptide Inhibitors.
Yijing Tang, Dong Zhang, Yanxian Zhang, Yonglan Liu, Xiong Gong, Yung Chang, Baiping Ren, Jie Zheng. ACS Appl Bio Mater 2020
Yijing Tang, Dong Zhang, Yanxian Zhang, Yonglan Liu, Xiong Gong, Yung Chang, Baiping Ren, Jie Zheng. ACS Appl Bio Mater 2020
50
Rationally designed, nontoxic, nonamyloidogenic analogues of human islet amyloid polypeptide with improved solubility.
Hui Wang, Andisheh Abedini, Bela Ruzsicska, Daniel P Raleigh. Biochemistry 2014
Hui Wang, Andisheh Abedini, Bela Ruzsicska, Daniel P Raleigh. Biochemistry 2014
50
Conformational Ensemble of hIAPP Dimer: Insight into the Molecular Mechanism by which a Green Tea Extract inhibits hIAPP Aggregation.
Yuxiang Mo, Jiangtao Lei, Yunxiang Sun, Qingwen Zhang, Guanghong Wei. Sci Rep 2016
Yuxiang Mo, Jiangtao Lei, Yunxiang Sun, Qingwen Zhang, Guanghong Wei. Sci Rep 2016
50
Oral treatment with the d-enantiomeric peptide D3 improves the pathology and behavior of Alzheimer's Disease transgenic mice.
Susanne Aileen Funke, Thomas van Groen, Inga Kadish, Dirk Bartnik, Luitgard Nagel-Steger, Oleksandr Brener, Torsten Sehl, Renu Batra-Safferling, Christine Moriscot, Guy Schoehn,[...]. ACS Chem Neurosci 2010
Susanne Aileen Funke, Thomas van Groen, Inga Kadish, Dirk Bartnik, Luitgard Nagel-Steger, Oleksandr Brener, Torsten Sehl, Renu Batra-Safferling, Christine Moriscot, Guy Schoehn,[...]. ACS Chem Neurosci 2010
50
Amyloid fibrils in human insulinoma and islets of Langerhans of the diabetic cat are derived from a neuropeptide-like protein also present in normal islet cells.
P Westermark, C Wernstedt, E Wilander, D W Hayden, T D O'Brien, K H Johnson. Proc Natl Acad Sci U S A 1987
P Westermark, C Wernstedt, E Wilander, D W Hayden, T D O'Brien, K H Johnson. Proc Natl Acad Sci U S A 1987
50
Molecular dynamics simulation on the inhibition mechanism of peptide-based inhibitor of islet amyloid polypeptide (IAPP) to islet amyloid polypeptide (IAPP22-28 ) oligomers.
Shuangyan Zhou, Qianqian Wang, Mengdan Ren, Ai Zhang, Huanxiang Liu, Xiaojun Yao. Chem Biol Drug Des 2017
Shuangyan Zhou, Qianqian Wang, Mengdan Ren, Ai Zhang, Huanxiang Liu, Xiaojun Yao. Chem Biol Drug Des 2017
50
Modeling the interface between islet amyloid polypeptide and insulin-based aggregation inhibitors: correlation to aggregation kinetics and membrane damage.
Hector Figueroa, Durgaprasad Peddi, Joshua M Osborne, Brenan M Wilson, Ranadheer Reddy Pesaru, Balakrishna Kurva, Swathi Ramaraju, Maria C Milletti, Deborah L Heyl. J Chem Inf Model 2012
Hector Figueroa, Durgaprasad Peddi, Joshua M Osborne, Brenan M Wilson, Ranadheer Reddy Pesaru, Balakrishna Kurva, Swathi Ramaraju, Maria C Milletti, Deborah L Heyl. J Chem Inf Model 2012
50
Pramlintide for the treatment of insulin-requiring diabetes mellitus: rationale and review of clinical data.
Davida F Kruger, Maurice A Gloster. Drugs 2004
Davida F Kruger, Maurice A Gloster. Drugs 2004
50
Genistein: A Dual Inhibitor of Both Amyloid β and Human Islet Amylin Peptides.
Baiping Ren, Yonglan Liu, Yanxian Zhang, Yongqing Cai, Xiong Gong, Yung Chang, Lijian Xu, Jie Zheng. ACS Chem Neurosci 2018
Baiping Ren, Yonglan Liu, Yanxian Zhang, Yongqing Cai, Xiong Gong, Yung Chang, Lijian Xu, Jie Zheng. ACS Chem Neurosci 2018
50
The effect of retro-inverse D-amino acid Aβ-peptides on Aβ-fibril formation.
Wenhui Xi, Ulrich H E Hansmann. J Chem Phys 2019
Wenhui Xi, Ulrich H E Hansmann. J Chem Phys 2019
50
MMPBSA.py: An Efficient Program for End-State Free Energy Calculations.
Bill R Miller, T Dwight McGee, Jason M Swails, Nadine Homeyer, Holger Gohlke, Adrian E Roitberg. J Chem Theory Comput 2012
Bill R Miller, T Dwight McGee, Jason M Swails, Nadine Homeyer, Holger Gohlke, Adrian E Roitberg. J Chem Theory Comput 2012
50
The ability of rodent islet amyloid polypeptide to inhibit amyloid formation by human islet amyloid polypeptide has important implications for the mechanism of amyloid formation and the design of inhibitors.
Ping Cao, Fanling Meng, Andisheh Abedini, Daniel P Raleigh. Biochemistry 2010
Ping Cao, Fanling Meng, Andisheh Abedini, Daniel P Raleigh. Biochemistry 2010
50
Design of a mimic of nonamyloidogenic and bioactive human islet amyloid polypeptide (IAPP) as nanomolar affinity inhibitor of IAPP cytotoxic fibrillogenesis.
Li-Mei Yan, Marianna Tatarek-Nossol, Aleksandra Velkova, Athanasios Kazantzis, Aphrodite Kapurniotu. Proc Natl Acad Sci U S A 2006
Li-Mei Yan, Marianna Tatarek-Nossol, Aleksandra Velkova, Athanasios Kazantzis, Aphrodite Kapurniotu. Proc Natl Acad Sci U S A 2006
50
Graphene oxide inhibits hIAPP amyloid fibrillation and toxicity in insulin-producing NIT-1 cells.
Praveen Nedumpully-Govindan, Esteban N Gurzov, Pengyu Chen, Emily H Pilkington, William J Stanley, Sara A Litwak, Thomas P Davis, Pu Chun Ke, Feng Ding. Phys Chem Chem Phys 2016
Praveen Nedumpully-Govindan, Esteban N Gurzov, Pengyu Chen, Emily H Pilkington, William J Stanley, Sara A Litwak, Thomas P Davis, Pu Chun Ke, Feng Ding. Phys Chem Chem Phys 2016
50
Peptide conformation and supramolecular organization in amylin fibrils: constraints from solid-state NMR.
Sorin Luca, Wai-Ming Yau, Richard Leapman, Robert Tycko. Biochemistry 2007
Sorin Luca, Wai-Ming Yau, Richard Leapman, Robert Tycko. Biochemistry 2007
50
Crystal Structures of IAPP Amyloidogenic Segments Reveal a Novel Packing Motif of Out-of-Register Beta Sheets.
Angela B Soriaga, Smriti Sangwan, Ramsay Macdonald, Michael R Sawaya, David Eisenberg. J Phys Chem B 2016
Angela B Soriaga, Smriti Sangwan, Ramsay Macdonald, Michael R Sawaya, David Eisenberg. J Phys Chem B 2016
50
Analysis of the ability of pramlintide to inhibit amyloid formation by human islet amyloid polypeptide reveals a balance between optimal recognition and reduced amyloidogenicity.
Hui Wang, Zachary Ridgway, Ping Cao, Bela Ruzsicska, Daniel P Raleigh. Biochemistry 2015
Hui Wang, Zachary Ridgway, Ping Cao, Bela Ruzsicska, Daniel P Raleigh. Biochemistry 2015
50
Probing amyloid fibril formation of the NFGAIL peptide by computer simulations.
Adrien Melquiond, Jean-Christophe Gelly, Normand Mousseau, Philippe Derreumaux. J Chem Phys 2007
Adrien Melquiond, Jean-Christophe Gelly, Normand Mousseau, Philippe Derreumaux. J Chem Phys 2007
50
Structure-based design and study of non-amyloidogenic, double N-methylated IAPP amyloid core sequences as inhibitors of IAPP amyloid formation and cytotoxicity.
Aphrodite Kapurniotu, Anke Schmauder, Konstantinos Tenidis. J Mol Biol 2002
Aphrodite Kapurniotu, Anke Schmauder, Konstantinos Tenidis. J Mol Biol 2002
50
Human islet amyloid polypeptide monomers form ordered beta-hairpins: a possible direct amyloidogenic precursor.
Nicholas F Dupuis, Chun Wu, Joan-Emma Shea, Michael T Bowers. J Am Chem Soc 2009
Nicholas F Dupuis, Chun Wu, Joan-Emma Shea, Michael T Bowers. J Am Chem Soc 2009
50
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.