A citation-based method for searching scientific literature

Carlo Rinaldi, Paolo Pizzul, Maria Pia Longhese, Diego Bonetti. Front Cell Dev Biol 2021
Times Cited: 7







List of co-cited articles
36 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


R Loops: From Physiological to Pathological Roles.
Tatiana García-Muse, Andrés Aguilera. Cell 2019
130
71

The Fanconi Anemia Pathway Protects Genome Integrity from R-loops.
María L García-Rubio, Carmen Pérez-Calero, Sonia I Barroso, Emanuela Tumini, Emilia Herrera-Moyano, Iván V Rosado, Andrés Aguilera. PLoS Genet 2015
160
57

R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
432
42

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
194
42

Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.
Lionel A Sanz, Stella R Hartono, Yoong Wearn Lim, Sandra Steyaert, Aparna Rajpurkar, Paul A Ginno, Xiaoqin Xu, Frédéric Chédin. Mol Cell 2016
230
42

BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2.
Vaibhav Bhatia, Sonia I Barroso, María L García-Rubio, Emanuela Tumini, Emilia Herrera-Moyano, Andrés Aguilera. Nature 2014
286
42

BRCA1 recruitment to transcriptional pause sites is required for R-loop-driven DNA damage repair.
Elodie Hatchi, Konstantina Skourti-Stathaki, Steffen Ventz, Luca Pinello, Angela Yen, Kinga Kamieniarz-Gdula, Stoil Dimitrov, Shailja Pathania, Kristine M McKinney, Matthew L Eaton,[...]. Mol Cell 2015
222
42

Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability.
Julie Sollier, Caroline Townsend Stork, María L García-Rubio, Renee D Paulsen, Andrés Aguilera, Karlene A Cimprich. Mol Cell 2014
279
42

Regulatory R-loops as facilitators of gene expression and genome stability.
Christof Niehrs, Brian Luke. Nat Rev Mol Cell Biol 2020
71
42

The Fanconi Anemia Pathway Maintains Genome Stability by Coordinating Replication and Transcription.
Rebekka A Schwab, Jadwiga Nieminuszczy, Fenil Shah, Jamie Langton, David Lopez Martinez, Chih-Chao Liang, Martin A Cohn, Richard J Gibbons, Andrew J Deans, Wojciech Niedzwiedz. Mol Cell 2015
195
42

Bmi-1 collaborates with c-Myc in tumorigenesis by inhibiting c-Myc-induced apoptosis via INK4a/ARF.
J J Jacobs, B Scheijen, J W Voncken, K Kieboom, A Berns, M van Lohuizen. Genes Dev 1999
509
28

Senataxin plays an essential role with DNA damage response proteins in meiotic recombination and gene silencing.
Olivier J Becherel, Abrey J Yeo, Alissa Stellati, Evelyn Y H Heng, John Luff, Amila M Suraweera, Rick Woods, Jean Fleming, Dianne Carrie, Kristine McKinney,[...]. PLoS Genet 2013
94
28

The polycomb group protein EZH2 is involved in progression of prostate cancer.
Sooryanarayana Varambally, Saravana M Dhanasekaran, Ming Zhou, Terrence R Barrette, Chandan Kumar-Sinha, Martin G Sanda, Debashis Ghosh, Kenneth J Pienta, Richard G A B Sewalt, Arie P Otte,[...]. Nature 2002
28

Polycomb silencers control cell fate, development and cancer.
Anke Sparmann, Maarten van Lohuizen. Nat Rev Cancer 2006
974
28

EZH2 oncogenic activity in castration-resistant prostate cancer cells is Polycomb-independent.
Kexin Xu, Zhenhua Jeremy Wu, Anna C Groner, Housheng Hansen He, Changmeng Cai, Rosina T Lis, Xiaoqiu Wu, Edward C Stack, Massimo Loda, Tao Liu,[...]. Science 2012
506
28

RNF168 ubiquitinates K13-15 on H2A/H2AX to drive DNA damage signaling.
Francesca Mattiroli, Joseph H A Vissers, Willem J van Dijk, Pauline Ikpa, Elisabetta Citterio, Wim Vermeulen, Jurgen A Marteijn, Titia K Sixma. Cell 2012
391
28

SETDB1, HP1 and SUV39 promote repositioning of 53BP1 to extend resection during homologous recombination in G2 cells.
Meryem Alagoz, Yoko Katsuki, Hideaki Ogiwara, Tomoo Ogi, Atsushi Shibata, Andreas Kakarougkas, Penny Jeggo. Nucleic Acids Res 2015
48
28

Senataxin Mutation Reveals How R-Loops Promote Transcription by Blocking DNA Methylation at Gene Promoters.
Christopher Grunseich, Isabel X Wang, Jason A Watts, Joshua T Burdick, Robert D Guber, Zhengwei Zhu, Alan Bruzel, Tyler Lanman, Kelian Chen, Alice B Schindler,[...]. Mol Cell 2018
71
28

Histone H3K9 methylation is dispensable for Caenorhabditis elegans development but suppresses RNA:DNA hybrid-associated repeat instability.
Peter Zeller, Jan Padeken, Robin van Schendel, Veronique Kalck, Marcel Tijsterman, Susan M Gasser. Nat Genet 2016
103
28

R loops: from transcription byproducts to threats to genome stability.
Andrés Aguilera, Tatiana García-Muse. Mol Cell 2012
574
28


S1-DRIP-seq identifies high expression and polyA tracts as major contributors to R-loop formation.
Lamia Wahba, Lorenzo Costantino, Frederick J Tan, Anjali Zimmer, Douglas Koshland. Genes Dev 2016
132
28

Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription.
Sandie Tuduri, Laure Crabbé, Chiara Conti, Hélène Tourrière, Heidi Holtgreve-Grez, Anna Jauch, Véronique Pantesco, John De Vos, Aubin Thomas, Charles Theillet,[...]. Nat Cell Biol 2009
326
28

Senataxin associates with replication forks to protect fork integrity across RNA-polymerase-II-transcribed genes.
Amaya Alzu, Rodrigo Bermejo, Martina Begnis, Chiara Lucca, Daniele Piccini, Walter Carotenuto, Marco Saponaro, Alessandra Brambati, Andrea Cocito, Marco Foiani,[...]. Cell 2012
150
28

R loops: new modulators of genome dynamics and function.
José M Santos-Pereira, Andrés Aguilera. Nat Rev Genet 2015
376
28

Senataxin: Genome Guardian at the Interface of Transcription and Neurodegeneration.
Matthias Groh, Laura Oana Albulescu, Agnese Cristini, Natalia Gromak. J Mol Biol 2017
63
28

Arginine methylation of the DDX5 helicase RGG/RG motif by PRMT5 regulates resolution of RNA:DNA hybrids.
Sofiane Y Mersaoui, Zhenbao Yu, Yan Coulombe, Martin Karam, Franciele F Busatto, Jean-Yves Masson, Stéphane Richard. EMBO J 2019
53
28


Senataxin resolves RNA:DNA hybrids forming at DNA double-strand breaks to prevent translocations.
Sarah Cohen, Nadine Puget, Yea-Lih Lin, Thomas Clouaire, Marion Aguirrebengoa, Vincent Rocher, Philippe Pasero, Yvan Canitrot, Gaëlle Legube. Nat Commun 2018
131
28

Human THO-Sin3A interaction reveals new mechanisms to prevent R-loops that cause genome instability.
Irene Salas-Armenteros, Carmen Pérez-Calero, Aleix Bayona-Feliu, Emanuela Tumini, Rosa Luna, Andrés Aguilera. EMBO J 2017
55
28


Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination.
Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Natalia Gromak. Mol Cell 2011
436
28

Drugging the R-loop interactome: RNA-DNA hybrid binding proteins as targets for cancer therapy.
Beáta Boros-Oláh, Nikoletta Dobos, Lilla Hornyák, Zoltán Szabó, Zsolt Karányi, Gábor Halmos, Jason Roszik, Lóránt Székvölgyi. DNA Repair (Amst) 2019
13
28

R-loops in proliferating cells but not in the brain: implications for AOA2 and other autosomal recessive ataxias.
Abrey J Yeo, Olivier J Becherel, John E Luff, Jason K Cullen, Thidathip Wongsurawat, Piroon Jenjaroenpun, Vladimir A Kuznetsov, Peter J McKinnon, Martin F Lavin. PLoS One 2014
37
28

The dark side of RNA:DNA hybrids.
Alessandra Brambati, Luca Zardoni, Eleonora Nardini, Achille Pellicioli, Giordano Liberi. Mutat Res Rev Mutat Res 2020
13
28


Histone deacetylase controls adult stem cell aging by balancing the expression of polycomb genes and jumonji domain containing 3.
Ji-Won Jung, Seunghee Lee, Min-Soo Seo, Sang-Bum Park, Andreas Kurtz, Soo-Kyung Kang, Kyung-Sun Kang. Cell Mol Life Sci 2010
82
14

Histone ubiquitination in the DNA damage response.
Michael Uckelmann, Titia K Sixma. DNA Repair (Amst) 2017
89
14

Targeting of BMI-1 with PTC-209 shows potent anti-myeloma activity and impairs the tumour microenvironment.
Arnold Bolomsky, Karin Schlangen, Wolfgang Schreiner, Niklas Zojer, Heinz Ludwig. J Hematol Oncol 2016
31
14

Novel therapeutic strategies for targeting liver cancer stem cells.
Naoki Oishi, Xin Wei Wang. Int J Biol Sci 2011
102
14

Bmi-1 is a crucial regulator of prostate stem cell self-renewal and malignant transformation.
Rita U Lukacs, Sanaz Memarzadeh, Hong Wu, Owen N Witte. Cell Stem Cell 2010
199
14


RYBP stimulates PRC1 to shape chromatin-based communication between Polycomb repressive complexes.
Nathan R Rose, Hamish W King, Neil P Blackledge, Nadezda A Fursova, Katherine Ji Ember, Roman Fischer, Benedikt M Kessler, Robert J Klose. Elife 2016
53
14

The polycomb group protein BMI1 is a transcriptional target of HDAC inhibitors.
Prashant V Bommi, Manjari Dimri, Anagh A Sahasrabuddhe, Janardan Khandekar, Goberdhan P Dimri. Cell Cycle 2010
61
14

Compaction of chromatin by diverse Polycomb group proteins requires localized regions of high charge.
Daniel J Grau, Brad A Chapman, Joe D Garlick, Mark Borowsky, Nicole J Francis, Robert E Kingston. Genes Dev 2011
128
14

PRC2 is dispensable for HOTAIR-mediated transcriptional repression.
Manuela Portoso, Roberta Ragazzini, Živa Brenčič, Arianna Moiani, Audrey Michaud, Ivaylo Vassilev, Michel Wassef, Nicolas Servant, Bruno Sargueil, Raphaël Margueron. EMBO J 2017
110
14

Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains.
Manching Ku, Richard P Koche, Esther Rheinbay, Eric M Mendenhall, Mitsuhiro Endoh, Tarjei S Mikkelsen, Aviva Presser, Chad Nusbaum, Xiaohui Xie, Andrew S Chi,[...]. PLoS Genet 2008
712
14


Reduced tau expression in gastric cancer can identify candidates for successful Paclitaxel treatment.
K Mimori, N Sadanaga, Y Yoshikawa, K Ishikawa, M Hashimoto, F Tanaka, A Sasaki, H Inoue, K Sugimachi, M Mori. Br J Cancer 2006
55
14

CpG island hypermethylation of tumor-suppressor genes in H. pylori-infected non-neoplastic gastric mucosa is linked with gastric cancer risk.
Mitsuru Kaise, Takuji Yamasaki, Jin Yonezawa, Jun Miwa, Yasuhiko Ohta, Hisao Tajiri. Helicobacter 2008
54
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.