A citation-based method for searching scientific literature

Robert A Player, Ellen R Forsyth, Kathleen J Verratti, David W Mohr, Alan F Scott, Christopher E Bradburne. Life Sci Alliance 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


DNA-binding factors shape the mouse methylome at distal regulatory regions.
Michael B Stadler, Rabih Murr, Lukas Burger, Robert Ivanek, Florian Lienert, Anne Schöler, Erik van Nimwegen, Christiane Wirbelauer, Edward J Oakeley, Dimos Gaidatzis,[...]. Nature 2011
871
100

Computational Prediction of Disordered Protein Motifs Using SLiMSuite.
Richard J Edwards, Kirsti Paulsen, Carla M Aguilar Gomez, Åsa Pérez-Bercoff. Methods Mol Biol 2020
1
100

A novel canine reference genome resolves genomic architecture and uncovers transcript complexity.
Chao Wang, Ola Wallerman, Maja-Louise Arendt, Elisabeth Sundström, Åsa Karlsson, Jessika Nordin, Suvi Mäkeläinen, Gerli Rosengren Pielberg, Jeanette Hanson, Åsa Ohlsson,[...]. Commun Biol 2021
9
100

Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain.
Alisa Mo, Eran A Mukamel, Fred P Davis, Chongyuan Luo, Gilbert L Henry, Serge Picard, Mark A Urich, Joseph R Nery, Terrence J Sejnowski, Ryan Lister,[...]. Neuron 2015
321
100

Juicebox.js Provides a Cloud-Based Visualization System for Hi-C Data.
James T Robinson, Douglass Turner, Neva C Durand, Helga Thorvaldsdóttir, Jill P Mesirov, Erez Lieberman Aiden. Cell Syst 2018
69
100

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
100



NUMTs in sequenced eukaryotic genomes.
Erik Richly, Dario Leister. Mol Biol Evol 2004
279
100

Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C.
Matt A Field, Benjamin D Rosen, Olga Dudchenko, Eva K F Chan, Andre E Minoche, Richard J Edwards, Kirston Barton, Ruth J Lyons, Daniel Enosi Tuipulotu, Vanessa M Hayes,[...]. Gigascience 2020
9
100

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom.
Neva C Durand, James T Robinson, Muhammad S Shamim, Ido Machol, Jill P Mesirov, Eric S Lander, Erez Lieberman Aiden. Cell Syst 2016
407
100

Assembly of long error-prone reads using de Bruijn graphs.
Yu Lin, Jeffrey Yuan, Mikhail Kolmogorov, Max W Shen, Mark Chaisson, Pavel A Pevzner. Proc Natl Acad Sci U S A 2016
83
100

Genome sequencing highlights the dynamic early history of dogs.
Adam H Freedman, Ilan Gronau, Rena M Schweizer, Diego Ortega-Del Vecchyo, Eunjung Han, Pedro M Silva, Marco Galaverni, Zhenxin Fan, Peter Marx, Belen Lorente-Galdos,[...]. PLoS Genet 2014
250
100

WALT: fast and accurate read mapping for bisulfite sequencing.
Haifeng Chen, Andrew D Smith, Ting Chen. Bioinformatics 2016
28
100

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.
Sergey Koren, Brian P Walenz, Konstantin Berlin, Jason R Miller, Nicholas H Bergman, Adam M Phillippy. Genome Res 2017
100

MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing.
Mark A Urich, Joseph R Nery, Ryan Lister, Robert J Schmitz, Joseph R Ecker. Nat Protoc 2015
135
100

8
100

The larynx of the Basenji dog.
R R Ashdown, T Lea. J Small Anim Pract 1979
2
100

Ancient European dog genomes reveal continuity since the Early Neolithic.
Laura R Botigué, Shiya Song, Amelie Scheu, Shyamalika Gopalan, Amanda L Pendleton, Matthew Oetjens, Angela M Taravella, Timo Seregély, Andrea Zeeb-Lanz, Rose-Marie Arbogast,[...]. Nat Commun 2017
74
100


Accurate detection of complex structural variations using single-molecule sequencing.
Fritz J Sedlazeck, Philipp Rescheneder, Moritz Smolka, Han Fang, Maria Nattestad, Arndt von Haeseler, Michael C Schatz. Nat Methods 2018
390
100

Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs.
O Thalmann, B Shapiro, P Cui, V J Schuenemann, S K Sawyer, D L Greenfield, M B Germonpré, M V Sablin, F López-Giráldez, X Domingo-Roura,[...]. Science 2013
198
100

Identification of active regulatory regions from DNA methylation data.
Lukas Burger, Dimos Gaidatzis, Dirk Schübeler, Michael B Stadler. Nucleic Acids Res 2013
107
100

Assembly of long, error-prone reads using repeat graphs.
Mikhail Kolmogorov, Jeffrey Yuan, Yu Lin, Pavel A Pevzner. Nat Biotechnol 2019
564
100

Genome sequence, comparative analysis and haplotype structure of the domestic dog.
Kerstin Lindblad-Toh, Claire M Wade, Tarjei S Mikkelsen, Elinor K Karlsson, David B Jaffe, Michael Kamal, Michele Clamp, Jean L Chang, Edward J Kulbokas, Michael C Zody,[...]. Nature 2005
100

Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies.
Michael J Roach, Simon A Schmidt, Anthony R Borneman. BMC Bioinformatics 2018
176
100

Demographic history, selection and functional diversity of the canine genome.
Elaine A Ostrander, Robert K Wayne, Adam H Freedman, Brian W Davis. Nat Rev Genet 2017
61
100

Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
100

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
Felipe A Simão, Robert M Waterhouse, Panagiotis Ioannidis, Evgenia V Kriventseva, Evgeny M Zdobnov. Bioinformatics 2015
100

An improved canine genome and a comprehensive catalogue of coding genes and non-coding transcripts.
Marc P Hoeppner, Andrew Lundquist, Mono Pirun, Jennifer R S Meadows, Neda Zamani, Jeremy Johnson, Görel Sundström, April Cook, Michael G FitzGerald, Ross Swofford,[...]. PLoS One 2014
130
100


A complete bacterial genome assembled de novo using only nanopore sequencing data.
Nicholas J Loman, Joshua Quick, Jared T Simpson. Nat Methods 2015
535
100

Mapping DNA structural variation in dogs.
Wei-Kang Chen, Joshua D Swartz, Laura J Rush, Carlos E Alvarez. Genome Res 2009
101
100

BEDTools: The Swiss-Army Tool for Genome Feature Analysis.
Aaron R Quinlan. Curr Protoc Bioinformatics 2014
916
100

Meta-analysis of gross insertions causing human genetic disease: novel mutational mechanisms and the role of replication slippage.
Jian-Min Chen, Nadia Chuzhanova, Peter D Stenson, Claude Férec, David N Cooper. Hum Mutat 2005
114
100

nhmmer: DNA homology search with profile HMMs.
Travis J Wheeler, Sean R Eddy. Bioinformatics 2013
272
100

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds.
Olga Dudchenko, Sanjit S Batra, Arina D Omer, Sarah K Nyquist, Marie Hoeger, Neva C Durand, Muhammad S Shamim, Ido Machol, Eric S Lander, Aviva Presser Aiden,[...]. Science 2017
423
100

Fanconi syndrome in a basenji.
S A Mainka. Can Vet J 1985
7
100

BEDTools: a flexible suite of utilities for comparing genomic features.
Aaron R Quinlan, Ira M Hall. Bioinformatics 2010
100

The neglected genome.
Graziano Pesole, John F Allen, Nick Lane, William Martin, David M Rand, Gottfried Schatz, Cecilia Saccone. EMBO Rep 2012
30
100



Large-scale diversification of skull shape in domestic dogs: disparity and modularity.
Abby Grace Drake, Christian Peter Klingenberg. Am Nat 2010
172
100


Genomic Analyses Reveal the Influence of Geographic Origin, Migration, and Hybridization on Modern Dog Breed Development.
Heidi G Parker, Dayna L Dreger, Maud Rimbault, Brian W Davis, Alexandra B Mullen, Gretchen Carpintero-Ramirez, Elaine A Ostrander. Cell Rep 2017
123
100

The genomic landscape of polymorphic human nuclear mitochondrial insertions.
Gargi Dayama, Sarah B Emery, Jeffrey M Kidd, Ryan E Mills. Nucleic Acids Res 2014
86
100

Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology.
Adam C English, Stephen Richards, Yi Han, Min Wang, Vanesa Vee, Jiaxin Qu, Xiang Qin, Donna M Muzny, Jeffrey G Reid, Kim C Worley,[...]. PLoS One 2012
551
100

Automated generation of heuristics for biological sequence comparison.
Guy St C Slater, Ewan Birney. BMC Bioinformatics 2005
100

Mammalian NUMT insertion is non-random.
Junko Tsuji, Martin C Frith, Kentaro Tomii, Paul Horton. Nucleic Acids Res 2012
57
100



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.