A citation-based method for searching scientific literature

Chih-Hsiang Chang, Hsin-Yi Chang, Juri Rappsilber, Yasushi Ishihama. Mol Cell Proteomics 2021
Times Cited: 10







List of co-cited articles
48 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products.
Oded Kleifeld, Alain Doucet, Ulrich auf dem Keller, Anna Prudova, Oliver Schilling, Rajesh K Kainthan, Amanda E Starr, Leonard J Foster, Jayachandran N Kizhakkedathu, Christopher M Overall. Nat Biotechnol 2010
376
40


Systems-level analysis of proteolytic events in increased vascular permeability and complement activation in skin inflammation.
Ulrich auf dem Keller, Anna Prudova, Ulrich Eckhard, Barbara Fingleton, Christopher M Overall. Sci Signal 2013
86
30


Sensitive Determination of Proteolytic Proteoforms in Limited Microscale Proteome Samples.
Samuel S H Weng, Fatih Demir, Enes K Ergin, Sabrina Dirnberger, Anuli Uzozie, Domenic Tuscher, Lorenz Nierves, Janice Tsui, Pitter F Huesgen, Philipp F Lange. Mol Cell Proteomics 2019
33
30


Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides.
Kris Gevaert, Marc Goethals, Lennart Martens, Jozef Van Damme, An Staes, Grégoire R Thomas, Joël Vandekerckhove. Nat Biotechnol 2003
451
30


Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini.
Sami Mahrus, Jonathan C Trinidad, David T Barkan, Andrej Sali, Alma L Burlingame, James A Wells. Cell 2008
336
30

N-degron and C-degron pathways of protein degradation.
Alexander Varshavsky. Proc Natl Acad Sci U S A 2019
221
20

Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial.
Christina Ludwig, Ludovic Gillet, George Rosenberger, Sabine Amon, Ben C Collins, Ruedi Aebersold. Mol Syst Biol 2018
372
20

Rapid and Easy Enrichment Strategy for Naturally Acetylated N Termini Based on LysN Digestion and Amine-Reactive Resin Capture.
Xiaoxian Du, Jingtian Lu, Lijun Yang, Huimin Bao, Lei Zhang, Guoquan Yan, Caiyun Fang, Haojie Lu. Anal Chem 2020
5
40



Comprehensive Analysis of Protein N-Terminome by Guanidination of Terminal Amines.
Mingwei Sun, Yu Liang, Yang Li, Kaiguang Yang, Baofeng Zhao, Huiming Yuan, Xiao Li, Xiaodan Zhang, Zhen Liang, Yichu Shan,[...]. Anal Chem 2020
8
25


The MaxQuant computational platform for mass spectrometry-based shotgun proteomics.
Stefka Tyanova, Tikira Temu, Juergen Cox. Nat Protoc 2016
20

Comprehensive analysis of human protein N-termini enables assessment of various protein forms.
Jeonghun Yeom, Shinyeong Ju, YunJin Choi, Eunok Paek, Cheolju Lee. Sci Rep 2017
34
20

How many human proteoforms are there?
Ruedi Aebersold, Jeffrey N Agar, I Jonathan Amster, Mark S Baker, Carolyn R Bertozzi, Emily S Boja, Catherine E Costello, Benjamin F Cravatt, Catherine Fenselau, Benjamin A Garcia,[...]. Nat Chem Biol 2018
322
20

Trypsin cleaves exclusively C-terminal to arginine and lysine residues.
Jesper V Olsen, Shao-En Ong, Matthias Mann. Mol Cell Proteomics 2004
731
20

Multiplex N-terminome analysis of MMP-2 and MMP-9 substrate degradomes by iTRAQ-TAILS quantitative proteomics.
Anna Prudova, Ulrich auf dem Keller, Georgina S Butler, Christopher M Overall. Mol Cell Proteomics 2010
204
20

Shedding light on ADAM metalloproteinases.
Ari-Pekka J Huovila, Anthony J Turner, Markku Pelto-Huikko, Iivari Kärkkäinen, Rebekka M Ortiz. Trends Biochem Sci 2005
351
20

The Perseus computational platform for comprehensive analysis of (prote)omics data.
Stefka Tyanova, Tikira Temu, Pavel Sinitcyn, Arthur Carlson, Marco Y Hein, Tamar Geiger, Matthias Mann, Jürgen Cox. Nat Methods 2016
20

Tryp-N: A Thermostable Protease for the Production of N-terminal Argininyl and Lysinyl Peptides.
John P Wilson, Jonathan J Ipsaro, Samantha N Del Giudice, Nikita Saha Turna, Carla M Gauss, Katharine H Dusenbury, Krisann Marquart, Keith D Rivera, Darryl J Pappin. J Proteome Res 2020
4
50

Andromeda: a peptide search engine integrated into the MaxQuant environment.
Jürgen Cox, Nadin Neuhauser, Annette Michalski, Richard A Scheltema, Jesper V Olsen, Matthias Mann. J Proteome Res 2011
20



Selecting protein N-terminal peptides by combined fractional diagonal chromatography.
An Staes, Francis Impens, Petra Van Damme, Bart Ruttens, Marc Goethals, Hans Demol, Evy Timmerman, Joël Vandekerckhove, Kris Gevaert. Nat Protoc 2011
130
20

Proteome-wide identification of arginine methylation in colorectal cancer tissues from patients.
Yongchul Lim, Ju Yeon Lee, Su Jin Ha, Suyeun Yu, Jung Kyong Shin, Hee Cheol Kim. Proteome Sci 2020
13
20

PTMD: A Database of Human Disease-associated Post-translational Modifications.
Haodong Xu, Yongbo Wang, Shaofeng Lin, Wankun Deng, Di Peng, Qinghua Cui, Yu Xue. Genomics Proteomics Bioinformatics 2018
64
20

Immunoaffinity enrichment and mass spectrometry analysis of protein methylation.
Ailan Guo, Hongbo Gu, Jing Zhou, Daniel Mulhern, Yi Wang, Kimberly A Lee, Vicky Yang, Mike Aguiar, Jon Kornhauser, Xiaoying Jia,[...]. Mol Cell Proteomics 2014
311
20


Development of IsoTaG, a Chemical Glycoproteomics Technique for Profiling Intact N- and O-Glycopeptides from Whole Cell Proteomes.
Christina M Woo, Alejandra Felix, William E Byrd, Devon K Zuegel, Mayumi Ishihara, Parastoo Azadi, Anthony T Iavarone, Sharon J Pitteri, Carolyn R Bertozzi. J Proteome Res 2017
60
20

Strong anion exchange-mediated phosphoproteomics reveals extensive human non-canonical phosphorylation.
Gemma Hardman, Simon Perkins, Philip J Brownridge, Christopher J Clarke, Dominic P Byrne, Amy E Campbell, Anton Kalyuzhnyy, Ashleigh Myall, Patrick A Eyers, Andrew R Jones,[...]. EMBO J 2019
76
20

Multi-lectin Affinity Chromatography and Quantitative Proteomic Analysis Reveal Differential Glycoform Levels between Prostate Cancer and Benign Prostatic Hyperplasia Sera.
Sarah M Totten, Ravali Adusumilli, Majlinda Kullolli, Cheylene Tanimoto, James D Brooks, Parag Mallick, Sharon J Pitteri. Sci Rep 2018
27
20

Current trends in protein acetylation analysis.
Issa Diallo, Michel Seve, Valérie Cunin, Frédéric Minassian, Jean-François Poisson, Sylvie Michelland, Sandrine Bourgoin-Voillard. Expert Rev Proteomics 2019
23
20

Biochemical and Computational Approaches for the Large-Scale Analysis of Protein Arginine Methylation by Mass Spectrometry.
Daniele Musiani, Enrico Massignani, Alessandro Cuomo, Avinash Yadav, Tiziana Bonaldi. Curr Protein Pept Sci 2020
6
33

Deep, Quantitative Coverage of the Lysine Acetylome Using Novel Anti-acetyl-lysine Antibodies and an Optimized Proteomic Workflow.
Tanya Svinkina, Hongbo Gu, Jeffrey C Silva, Philipp Mertins, Jana Qiao, Shaunt Fereshetian, Jacob D Jaffe, Eric Kuhn, Namrata D Udeshi, Steven A Carr. Mol Cell Proteomics 2015
112
20

Current Methods of Post-Translational Modification Analysis and Their Applications in Blood Cancers.
Katie Dunphy, Paul Dowling, Despina Bazou, Peter O'Gorman. Cancers (Basel) 2021
10
20

Identification, Quantification, and Site Localization of Protein Posttranslational Modifications via Mass Spectrometry-Based Proteomics.
Mi Ke, Hainan Shen, Linjue Wang, Shusheng Luo, Lin Lin, Jie Yang, Ruijun Tian. Adv Exp Med Biol 2016
38
20


TAILS N-Terminomics and Proteomics Show Protein Degradation Dominates over Proteolytic Processing by Cathepsins in Pancreatic Tumors.
Anna Prudova, Vasilena Gocheva, Ulrich Auf dem Keller, Ulrich Eckhard, Oakley C Olson, Leila Akkari, Georgina S Butler, Nikolaus Fortelny, Philipp F Lange, Jennifer C Mark,[...]. Cell Rep 2016
53
20

Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates.
Oded Kleifeld, Alain Doucet, Anna Prudova, Ulrich auf dem Keller, Magda Gioia, Jayachandran N Kizhakkedathu, Christopher M Overall. Nat Protoc 2011
208
20

Proteome-wide analysis of protein carboxy termini: C terminomics.
Oliver Schilling, Olivier Barré, Pitter F Huesgen, Christopher M Overall. Nat Methods 2010
120
20

A Chemical Strategy for Protease Substrate Profiling.
Andrew R Griswold, Paolo Cifani, Sahana D Rao, Abram J Axelrod, Matthew M Miele, Ronald C Hendrickson, Alex Kentsis, Daniel A Bachovchin. Cell Chem Biol 2019
30
20

Mapping proteolytic neo-N termini at the surface of living cells.
Amy M Weeks, James R Byrnes, Irene Lui, James A Wells. Proc Natl Acad Sci U S A 2021
12
20

In vivo N-Terminomics Highlights Novel Functions of ADAMTS2 and ADAMTS14 in Skin Collagen Matrix Building.
Cédric Leduc, Laura Dupont, Loïc Joannes, Christine Monseur, Dominique Baiwir, Gabriel Mazzucchelli, Christophe Deroanne, Alain Colige, Mourad Bekhouche. Front Mol Biosci 2021
9
22

A statistical model for identifying proteins by tandem mass spectrometry.
Alexey I Nesvizhskii, Andrew Keller, Eugene Kolker, Ruedi Aebersold. Anal Chem 2003
10

WT1-dependent sulfatase expression maintains the normal glomerular filtration barrier.
Valérie A Schumacher, Ursula Schlötzer-Schrehardt, S Ananth Karumanchi, Xiaofeng Shi, Joseph Zaia, Stefanie Jeruschke, Dongsheng Zhang, Hermann Pavenstädt, Astrid Drenckhan, Kerstin Amann,[...]. J Am Soc Nephrol 2011
49
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.