A citation-based method for searching scientific literature

Nagarjuna R Cheemarla, Timothy A Watkins, Valia T Mihaylova, Bao Wang, Dejian Zhao, Guilin Wang, Marie L Landry, Ellen F Foxman. medRxiv 2021
Times Cited: 7







List of co-cited articles
44 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Pathological findings of COVID-19 associated with acute respiratory distress syndrome.
Zhe Xu, Lei Shi, Yijin Wang, Jiyuan Zhang, Lei Huang, Chao Zhang, Shuhong Liu, Peng Zhao, Hongxia Liu, Li Zhu,[...]. Lancet Respir Med 2020
42


Safety and efficacy of inhaled nebulised interferon beta-1a (SNG001) for treatment of SARS-CoV-2 infection: a randomised, double-blind, placebo-controlled, phase 2 trial.
Phillip D Monk, Richard J Marsden, Victoria J Tear, Jody Brookes, Toby N Batten, Marcin Mankowski, Felicity J Gabbay, Donna E Davies, Stephen T Holgate, Ling-Pei Ho,[...]. Lancet Respir Med 2021
225
42

Activation and evasion of type I interferon responses by SARS-CoV-2.
Xiaobo Lei, Xiaojing Dong, Ruiyi Ma, Wenjing Wang, Xia Xiao, Zhongqin Tian, Conghui Wang, Ying Wang, Li Li, Lili Ren,[...]. Nat Commun 2020
420
42

Clinical Characteristics of Coronavirus Disease 2019 in China.
Wei-Jie Guan, Zheng-Yi Ni, Yu Hu, Wen-Hua Liang, Chun-Quan Ou, Jian-Xing He, Lei Liu, Hong Shan, Chun-Liang Lei, David S C Hui,[...]. N Engl J Med 2020
42

Angiotensin-converting enzyme 2 is a functional receptor for the SARS coronavirus.
Wenhui Li, Michael J Moore, Natalya Vasilieva, Jianhua Sui, Swee Kee Wong, Michael A Berne, Mohan Somasundaran, John L Sullivan, Katherine Luzuriaga, Thomas C Greenough,[...]. Nature 2003
42

SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor.
Markus Hoffmann, Hannah Kleine-Weber, Simon Schroeder, Nadine Krüger, Tanja Herrler, Sandra Erichsen, Tobias S Schiergens, Georg Herrler, Nai-Huei Wu, Andreas Nitsche,[...]. Cell 2020
42

Detectable Serum Severe Acute Respiratory Syndrome Coronavirus 2 Viral Load (RNAemia) Is Closely Correlated With Drastically Elevated Interleukin 6 Level in Critically Ill Patients With Coronavirus Disease 2019.
Xiaohua Chen, Binghong Zhao, Yueming Qu, Yurou Chen, Jie Xiong, Yong Feng, Dong Men, Qianchuan Huang, Ying Liu, Bo Yang,[...]. Clin Infect Dis 2020
542
28

Distinct Disease Severity Between Children and Older Adults With Coronavirus Disease 2019 (COVID-19): Impacts of ACE2 Expression, Distribution, and Lung Progenitor Cells.
Zhao Zhang, Liyan Guo, Li Huang, Che Zhang, Ruibang Luo, Liang Zeng, Huiying Liang, Qiuhui Li, Xiaoxia Lu, Xianfeng Wang,[...]. Clin Infect Dis 2021
19
28

Inflammasomes are activated in response to SARS-CoV-2 infection and are associated with COVID-19 severity in patients.
Tamara S Rodrigues, Keyla S G de Sá, Adriene Y Ishimoto, Amanda Becerra, Samuel Oliveira, Leticia Almeida, Augusto V Gonçalves, Debora B Perucello, Warrison A Andrade, Ricardo Castro,[...]. J Exp Med 2021
252
28

Immune responses to SARS-CoV-2 infection in hospitalized pediatric and adult patients.
Carl A Pierce, Paula Preston-Hurlburt, Yile Dai, Clare Burn Aschner, Natalia Cheshenko, Benjamin Galen, Scott J Garforth, Natalia G Herrera, Rohit K Jangra, Nicholas C Morano,[...]. Sci Transl Med 2020
157
28

Paneth cell extrusion and release of antimicrobial products is directly controlled by immune cell-derived IFN-γ.
Henner F Farin, Wouter R Karthaus, Pekka Kujala, Maryam Rakhshandehroo, Gerald Schwank, Robert G J Vries, Eric Kalkhoven, Edward E S Nieuwenhuis, Hans Clevers. J Exp Med 2014
164
28

Rhinovirus-16 induced temporal interferon responses in nasal epithelium links with viral clearance and symptoms.
Abilash Ravi, Meiping Chang, Marianne van de Pol, Shan Yang, Antonios Aliprantis, Bob Thornton, Leonidas N Carayannopoulos, An Bautmans, Martine Robberechts, Inge De Lepeleire,[...]. Clin Exp Allergy 2019
17
28


Pulmonary epithelial cells are a source of interferon-gamma in response to Mycobacterium tuberculosis infection.
Monika Sharma, Sadhna Sharma, Sugata Roy, Saurabh Varma, Mridula Bose. Immunol Cell Biol 2007
61
28

Aging impairs both primary and secondary RIG-I signaling for interferon induction in human monocytes.
Ryan D Molony, Jenny T Nguyen, Yong Kong, Ruth R Montgomery, Albert C Shaw, Akiko Iwasaki. Sci Signal 2017
71
28

Distinct antibody responses to SARS-CoV-2 in children and adults across the COVID-19 clinical spectrum.
Stuart P Weisberg, Thomas J Connors, Yun Zhu, Matthew R Baldwin, Wen-Hsuan Lin, Sandeep Wontakal, Peter A Szabo, Steven B Wells, Pranay Dogra, Joshua Gray,[...]. Nat Immunol 2021
227
28

Salmon provides fast and bias-aware quantification of transcript expression.
Rob Patro, Geet Duggal, Michael I Love, Rafael A Irizarry, Carl Kingsford. Nat Methods 2017
28

Pediatric influenza and illness severity: what is known and what questions remain?
Joshua D Doyle, Angela P Campbell. Curr Opin Pediatr 2019
14
28

Age-related alterations in innate immune receptor expression and ability of macrophages to respond to pathogen challenge in vitro.
Shuang Liang, Hisanori Domon, Kavita B Hosur, Min Wang, George Hajishengallis. Mech Ageing Dev 2009
50
28

Inflammatory syndromes associated with SARS-CoV-2 infection: dysregulation of the immune response across the age spectrum.
Jill E Weatherhead, Eva Clark, Tiphanie P Vogel, Robert L Atmar, Prathit A Kulkarni. J Clin Invest 2020
25
28

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
28

Anti-spike IgG causes severe acute lung injury by skewing macrophage responses during acute SARS-CoV infection.
Li Liu, Qiang Wei, Qingqing Lin, Jun Fang, Haibo Wang, Hauyee Kwok, Hangying Tang, Kenji Nishiura, Jie Peng, Zhiwu Tan,[...]. JCI Insight 2019
535
28

Seasonal human coronavirus antibodies are boosted upon SARS-CoV-2 infection but not associated with protection.
Elizabeth M Anderson, Eileen C Goodwin, Anurag Verma, Claudia P Arevalo, Marcus J Bolton, Madison E Weirick, Sigrid Gouma, Christopher M McAllister, Shannon R Christensen, JoEllen Weaver,[...]. Cell 2021
151
28


Enhanced SARS-CoV-2 neutralization by dimeric IgA.
Zijun Wang, Julio C C Lorenzi, Frauke Muecksch, Shlomo Finkin, Charlotte Viant, Christian Gaebler, Melissa Cipolla, Hans-Heinrich Hoffmann, Thiago Y Oliveira, Deena A Oren,[...]. Sci Transl Med 2021
156
28

Immune response in children with COVID-19 is characterized by lower levels of T-cell activation than infected adults.
Daniele Moratto, Mauro Giacomelli, Marco Chiarini, Lucia Savarè, Barbara Saccani, Mario Motta, Silviana Timpano, Piercarlo Poli, Simone Paghera, Luisa Imberti,[...]. Eur J Immunol 2020
25
28

Upper airway gene expression reveals suppressed immune responses to SARS-CoV-2 compared with other respiratory viruses.
Eran Mick, Jack Kamm, Angela Oliveira Pisco, Kalani Ratnasiri, Jennifer M Babik, Gloria Castañeda, Joseph L DeRisi, Angela M Detweiler, Samantha L Hao, Kirsten N Kangelaris,[...]. Nat Commun 2020
52
28

Hospitalization Rates and Characteristics of Patients Hospitalized with Laboratory-Confirmed Coronavirus Disease 2019 - COVID-NET, 14 States, March 1-30, 2020.
Shikha Garg, Lindsay Kim, Michael Whitaker, Alissa O'Halloran, Charisse Cummings, Rachel Holstein, Mila Prill, Shua J Chai, Pam D Kirley, Nisha B Alden,[...]. MMWR Morb Mortal Wkly Rep 2020
28

Metabolic regulation of immune responses.
Kirthana Ganeshan, Ajay Chawla. Annu Rev Immunol 2014
394
28

Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China.
Chaolin Huang, Yeming Wang, Xingwang Li, Lili Ren, Jianping Zhao, Yi Hu, Li Zhang, Guohui Fan, Jiuyang Xu, Xiaoying Gu,[...]. Lancet 2020
28

An organoid-derived bronchioalveolar model for SARS-CoV-2 infection of human alveolar type II-like cells.
Mart M Lamers, Jelte van der Vaart, Kèvin Knoops, Samra Riesebosch, Tim I Breugem, Anna Z Mykytyn, Joep Beumer, Debby Schipper, Karel Bezstarosti, Charlotte D Koopman,[...]. EMBO J 2021
67
28

SARS-CoV-2 entry into human airway organoids is serine protease-mediated and facilitated by the multibasic cleavage site.
Anna Z Mykytyn, Tim I Breugem, Samra Riesebosch, Debby Schipper, Petra B van den Doel, Robbert J Rottier, Mart M Lamers, Bart L Haagmans. Elife 2021
55
28

A pneumonia outbreak associated with a new coronavirus of probable bat origin.
Peng Zhou, Xing-Lou Yang, Xian-Guang Wang, Ben Hu, Lei Zhang, Wei Zhang, Hao-Rui Si, Yan Zhu, Bei Li, Chao-Lin Huang,[...]. Nature 2020
28

SARS-CoV-2 Infects the Brain Choroid Plexus and Disrupts the Blood-CSF Barrier in Human Brain Organoids.
Laura Pellegrini, Anna Albecka, Donna L Mallery, Max J Kellner, David Paul, Andrew P Carter, Leo C James, Madeline A Lancaster. Cell Stem Cell 2020
161
28

Impaired type I interferon activity and inflammatory responses in severe COVID-19 patients.
Jérôme Hadjadj, Nader Yatim, Laura Barnabei, Aurélien Corneau, Jeremy Boussier, Nikaïa Smith, Hélène Péré, Bruno Charbit, Vincent Bondet, Camille Chenevier-Gobeaux,[...]. Science 2020
28

Identification of Required Host Factors for SARS-CoV-2 Infection in Human Cells.
Zharko Daniloski, Tristan X Jordan, Hans-Hermann Wessels, Daisy A Hoagland, Silva Kasela, Mateusz Legut, Silas Maniatis, Eleni P Mimitou, Lu Lu, Evan Geller,[...]. Cell 2021
217
28

SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues.
Carly G K Ziegler, Samuel J Allon, Sarah K Nyquist, Ian M Mbano, Vincent N Miao, Constantine N Tzouanas, Yuming Cao, Ashraf S Yousif, Julia Bals, Blake M Hauser,[...]. Cell 2020
28

Inborn errors of type I IFN immunity in patients with life-threatening COVID-19.
Qian Zhang, Paul Bastard, Zhiyong Liu, Jérémie Le Pen, Marcela Moncada-Velez, Jie Chen, Masato Ogishi, Ira K D Sabli, Stephanie Hodeib, Cecilia Korol,[...]. Science 2020
28

Infection of bat and human intestinal organoids by SARS-CoV-2.
Jie Zhou, Cun Li, Xiaojuan Liu, Man Chun Chiu, Xiaoyu Zhao, Dong Wang, Yuxuan Wei, Andrew Lee, Anna Jinxia Zhang, Hin Chu,[...]. Nat Med 2020
278
28

SARS-CoV-2 productively infects human gut enterocytes.
Mart M Lamers, Joep Beumer, Jelte van der Vaart, Kèvin Knoops, Jens Puschhof, Tim I Breugem, Raimond B G Ravelli, J Paul van Schayck, Anna Z Mykytyn, Hans Q Duimel,[...]. Science 2020
822
28

Critical Role of Type III Interferon in Controlling SARS-CoV-2 Infection in Human Intestinal Epithelial Cells.
Megan L Stanifer, Carmon Kee, Mirko Cortese, Camila Metz Zumaran, Sergio Triana, Markus Mukenhirn, Hans-Georg Kraeusslich, Theodore Alexandrov, Ralf Bartenschlager, Steeve Boulant. Cell Rep 2020
170
28

TMPRSS2 and TMPRSS4 promote SARS-CoV-2 infection of human small intestinal enterocytes.
Ruochen Zang, Maria Florencia Gomez Castro, Broc T McCune, Qiru Zeng, Paul W Rothlauf, Naomi M Sonnek, Zhuoming Liu, Kevin F Brulois, Xin Wang, Harry B Greenberg,[...]. Sci Immunol 2020
497
28

Dynamic innate immune response determines susceptibility to SARS-CoV-2 infection and early replication kinetics.
Nagarjuna R Cheemarla, Timothy A Watkins, Valia T Mihaylova, Bao Wang, Dejian Zhao, Guilin Wang, Marie L Landry, Ellen F Foxman. J Exp Med 2021
40
28

SARS-CoV-2 desensitizes host cells to interferon through inhibition of the JAK-STAT pathway.
Da-Yuan Chen, Nazimuddin Khan, Brianna J Close, Raghuveera K Goel, Benjamin Blum, Alexander H Tavares, Devin Kenney, Hasahn L Conway, Jourdan K Ewoldt, Sebastian Kapell,[...]. bioRxiv 2020
11
14

Simulation of the Clinical and Pathological Manifestations of Coronavirus Disease 2019 (COVID-19) in a Golden Syrian Hamster Model: Implications for Disease Pathogenesis and Transmissibility.
Jasper Fuk-Woo Chan, Anna Jinxia Zhang, Shuofeng Yuan, Vincent Kwok-Man Poon, Chris Chung-Sing Chan, Andrew Chak-Yiu Lee, Wan-Mui Chan, Zhimeng Fan, Hoi-Wah Tsoi, Lei Wen,[...]. Clin Infect Dis 2020
557
14

Transmission of SARS-CoV-2: A Review of Viral, Host, and Environmental Factors.
Eric A Meyerowitz, Aaron Richterman, Rajesh T Gandhi, Paul E Sax. Ann Intern Med 2021
261
14

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
14

A single-cell atlas of the peripheral immune response in patients with severe COVID-19.
Aaron J Wilk, Arjun Rustagi, Nancy Q Zhao, Jonasel Roque, Giovanny J Martínez-Colón, Julia L McKechnie, Geoffrey T Ivison, Thanmayi Ranganath, Rosemary Vergara, Taylor Hollis,[...]. Nat Med 2020
636
14

Cadherin-related family member 3, a childhood asthma susceptibility gene product, mediates rhinovirus C binding and replication.
Yury A Bochkov, Kelly Watters, Shamaila Ashraf, Theodor F Griggs, Mark K Devries, Daniel J Jackson, Ann C Palmenberg, James E Gern. Proc Natl Acad Sci U S A 2015
234
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.