A citation-based method for searching scientific literature

Yusuke Nasu, Yi Shen, Luke Kramer, Robert E Campbell. Nat Chem Biol 2021
Times Cited: 31







List of co-cited articles
304 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity




Circular permutation and receptor insertion within green fluorescent proteins.
G S Baird, D A Zacharias, R Y Tsien. Proc Natl Acad Sci U S A 1999
627
29

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
307
25

Fluorescent indicators for Ca2+ based on green fluorescent proteins and calmodulin.
A Miyawaki, J Llopis, R Heim, J M McCaffery, J A Adams, M Ikura, R Y Tsien. Nature 1997
25

The green fluorescent protein.
R Y Tsien. Annu Rev Biochem 1998
22

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
22

A genetically encoded single-wavelength sensor for imaging cytosolic and cell surface ATP.
Mark A Lobas, Rongkun Tao, Jun Nagai, Mira T Kronschläger, Philip M Borden, Jonathan S Marvin, Loren L Looger, Baljit S Khakh. Nat Commun 2019
101
22

Ultrafast neuronal imaging of dopamine dynamics with designed genetically encoded sensors.
Tommaso Patriarchi, Jounhong Ryan Cho, Katharina Merten, Mark W Howe, Aaron Marley, Wei-Hong Xiong, Robert W Folk, Gerard Joey Broussard, Ruqiang Liang, Min Jee Jang,[...]. Science 2018
359
19

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.
Lin Tian, S Andrew Hires, Tianyi Mao, Daniel Huber, M Eugenia Chiappe, Sreekanth H Chalasani, Leopoldo Petreanu, Jasper Akerboom, Sean A McKinney, Eric R Schreiter,[...]. Nat Methods 2009
19

Bright and High-Performance Genetically Encoded Ca2+ Indicator Based on mNeonGreen Fluorescent Protein.
Landon Zarowny, Abhi Aggarwal, Virginia M S Rutten, Ilya Kolb, Ronak Patel, Hsin-Yi Huang, Yu-Fen Chang, Tiffany Phan, Richard Kanyo, Misha B Ahrens,[...]. ACS Sens 2020
17
35

Genetically encoded fluorescent indicators for imaging intracellular potassium ion concentration.
Yi Shen, Sheng-Yi Wu, Vladimir Rancic, Abhi Aggarwal, Yong Qian, Shin-Ichiro Miyashita, Klaus Ballanyi, Robert E Campbell, Min Dong. Commun Biol 2019
53
19

A genetically encoded near-infrared fluorescent calcium ion indicator.
Yong Qian, Kiryl D Piatkevich, Benedict Mc Larney, Ahmed S Abdelfattah, Sohum Mehta, Mitchell H Murdock, Sven Gottschalk, Rosana S Molina, Wei Zhang, Yingche Chen,[...]. Nat Methods 2019
82
19

Circularly permuted green fluorescent proteins engineered to sense Ca2+.
T Nagai, A Sawano, E S Park, A Miyawaki. Proc Natl Acad Sci U S A 2001
708
19

An expanded palette of genetically encoded Ca²⁺ indicators.
Yongxin Zhao, Satoko Araki, Jiahui Wu, Takayuki Teramoto, Yu-Fen Chang, Masahiro Nakano, Ahmed S Abdelfattah, Manabi Fujiwara, Takeshi Ishihara, Takeharu Nagai,[...]. Science 2011
819
19

An optimized fluorescent probe for visualizing glutamate neurotransmission.
Jonathan S Marvin, Bart G Borghuis, Lin Tian, Joseph Cichon, Mark T Harnett, Jasper Akerboom, Andrew Gordus, Sabine L Renninger, Tsai-Wen Chen, Cornelia I Bargmann,[...]. Nat Methods 2013
511
19

Directed Evolution of a Selective and Sensitive Serotonin Sensor via Machine Learning.
Elizabeth K Unger, Jacob P Keller, Michael Altermatt, Ruqiang Liang, Aya Matsui, Chunyang Dong, Olivia J Hon, Zi Yao, Junqing Sun, Samba Banala,[...]. Cell 2020
37
19

A Genetically Encoded Fluorescent Sensor for Rapid and Specific In Vivo Detection of Norepinephrine.
Jiesi Feng, Changmei Zhang, Julieta E Lischinsky, Miao Jing, Jingheng Zhou, Huan Wang, Yajun Zhang, Ao Dong, Zhaofa Wu, Hao Wu,[...]. Neuron 2019
152
16

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
431
16

The Growing and Glowing Toolbox of Fluorescent and Photoactive Proteins.
Erik A Rodriguez, Robert E Campbell, John Y Lin, Michael Z Lin, Atsushi Miyawaki, Amy E Palmer, Xiaokun Shu, Jin Zhang, Roger Y Tsien. Trends Biochem Sci 2017
295
16

Improved genetically encoded near-infrared fluorescent calcium ion indicators for in vivo imaging.
Yong Qian, Danielle M Orozco Cosio, Kiryl D Piatkevich, Sarah Aufmkolk, Wan-Chi Su, Orhan T Celiker, Anne Schohl, Mitchell H Murdock, Abhi Aggarwal, Yu-Fen Chang,[...]. PLoS Biol 2020
19
26


Imaging cytosolic NADH-NAD(+) redox state with a genetically encoded fluorescent biosensor.
Yin Pun Hung, John G Albeck, Mathew Tantama, Gary Yellen. Cell Metab 2011
309
16

Genetically encoded fluorescent sensors reveal dynamic regulation of NADPH metabolism.
Rongkun Tao, Yuzheng Zhao, Huanyu Chu, Aoxue Wang, Jiahuan Zhu, Xianjun Chen, Yejun Zou, Mei Shi, Renmei Liu, Ni Su,[...]. Nat Methods 2017
137
16

Rapid construction of metabolite biosensors using domain-insertion profiling.
Dana C Nadler, Stacy-Anne Morgan, Avi Flamholz, Kaitlyn E Kortright, David F Savage. Nat Commun 2016
55
16

A genetically encoded sensor for measuring serotonin dynamics.
Jinxia Wan, Wanling Peng, Xuelin Li, Tongrui Qian, Kun Song, Jianzhi Zeng, Fei Deng, Suyu Hao, Jiesi Feng, Peng Zhang,[...]. Nat Neurosci 2021
35
16

A genetically encoded FRET lactate sensor and its use to detect the Warburg effect in single cancer cells.
Alejandro San Martín, Sebastián Ceballo, Iván Ruminot, Rodrigo Lerchundi, Wolf B Frommer, Luis Felipe Barros. PLoS One 2013
186
16

Quantitative in vivo imaging of neuronal glucose concentrations with a genetically encoded fluorescence lifetime sensor.
Carlos Manlio Díaz-García, Carolina Lahmann, Juan Ramón Martínez-François, Binsen Li, Dorothy Koveal, Nidhi Nathwani, Mahia Rahman, Jacob P Keller, Jonathan S Marvin, Loren L Looger,[...]. J Neurosci Res 2019
34
16


mScarlet: a bright monomeric red fluorescent protein for cellular imaging.
Daphne S Bindels, Lindsay Haarbosch, Laura van Weeren, Marten Postma, Katrin E Wiese, Marieke Mastop, Sylvain Aumonier, Guillaume Gotthard, Antoine Royant, Mark A Hink,[...]. Nat Methods 2017
396
12

A Genetically Encoded Fluorescent Sensor Enables Rapid and Specific Detection of Dopamine in Flies, Fish, and Mice.
Fangmiao Sun, Jianzhi Zeng, Miao Jing, Jingheng Zhou, Jiesi Feng, Scott F Owen, Yichen Luo, Funing Li, Huan Wang, Takashi Yamaguchi,[...]. Cell 2018
277
12

pHuji, a pH-sensitive red fluorescent protein for imaging of exo- and endocytosis.
Yi Shen, Morgane Rosendale, Robert E Campbell, David Perrais. J Cell Biol 2014
121
12

High-Performance Intensiometric Direct- and Inverse-Response Genetically Encoded Biosensors for Citrate.
Yufeng Zhao, Yi Shen, Yurong Wen, Robert E Campbell. ACS Cent Sci 2020
13
30

Expanded dynamic range of fluorescent indicators for Ca(2+) by circularly permuted yellow fluorescent proteins.
Takeharu Nagai, Shuichi Yamada, Takashi Tominaga, Michinori Ichikawa, Atsushi Miyawaki. Proc Natl Acad Sci U S A 2004
761
12

Genetically Encoded Glutamate Indicators with Altered Color and Topology.
Jiahui Wu, Ahmed S Abdelfattah, Hang Zhou, Araya Ruangkittisakul, Yong Qian, Klaus Ballanyi, Robert E Campbell. ACS Chem Biol 2018
41
12

The HaloTag as a general scaffold for far-red tunable chemigenetic indicators.
Claire Deo, Ahmed S Abdelfattah, Hersh K Bhargava, Adam J Berro, Natalie Falco, Helen Farrants, Benjamien Moeyaert, Mariam Chupanova, Luke D Lavis, Eric R Schreiter. Nat Chem Biol 2021
22
18

Understanding the Fluorescence Change in Red Genetically Encoded Calcium Ion Indicators.
Rosana S Molina, Yong Qian, Jiahui Wu, Yi Shen, Robert E Campbell, Mikhail Drobizhev, Thomas E Hughes. Biophys J 2019
17
23

A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578.
Yi Shen, Hod Dana, Ahmed S Abdelfattah, Ronak Patel, Jamien Shea, Rosana S Molina, Bijal Rawal, Vladimir Rancic, Yu-Fen Chang, Lanshi Wu,[...]. BMC Biol 2018
50
12

Novel genetically encoded fluorescent probes enable real-time detection of potassium in vitro and in vivo.
Helmut Bischof, Markus Rehberg, Sarah Stryeck, Katharina Artinger, Emrah Eroglu, Markus Waldeck-Weiermair, Benjamin Gottschalk, Rene Rost, Andras T Deak, Tobias Niedrist,[...]. Nat Commun 2017
71
12


Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics.
Jasper Akerboom, Nicole Carreras Calderón, Lin Tian, Sebastian Wabnig, Matthias Prigge, Johan Tolö, Andrew Gordus, Michael B Orger, Kristen E Severi, John J Macklin,[...]. Front Mol Neurosci 2013
426
12


SoNar, a Highly Responsive NAD+/NADH Sensor, Allows High-Throughput Metabolic Screening of Anti-tumor Agents.
Yuzheng Zhao, Qingxun Hu, Feixiong Cheng, Ni Su, Aoxue Wang, Yejun Zou, Hanyang Hu, Xianjun Chen, Hai-Meng Zhou, Xinzhi Huang,[...]. Cell Metab 2015
201
12

A genetically encoded fluorescent reporter of ATP:ADP ratio.
Jim Berg, Yin Pun Hung, Gary Yellen. Nat Methods 2009
310
12

Deciphering the molecular mechanism responsible for GCaMP6m's Ca2+-dependent change in fluorescence.
Lauren M Barnett, Thomas E Hughes, Mikhail Drobizhev. PLoS One 2017
52
12

A genetically encoded fluorescent sensor for in vivo imaging of GABA.
Jonathan S Marvin, Yoshiteru Shimoda, Vincent Magloire, Marco Leite, Takashi Kawashima, Thomas P Jensen, Ilya Kolb, Erika L Knott, Ondrej Novak, Kaspar Podgorski,[...]. Nat Methods 2019
125
12

Crystal structures of the GCaMP calcium sensor reveal the mechanism of fluorescence signal change and aid rational design.
Jasper Akerboom, Jonathan D Vélez Rivera, María M Rodríguez Guilbe, Elisa C Alfaro Malavé, Hector H Hernandez, Lin Tian, S Andrew Hires, Jonathan S Marvin, Loren L Looger, Eric R Schreiter. J Biol Chem 2009
169
12

Dynamic and quantitative Ca2+ measurements using improved cameleons.
A Miyawaki, O Griesbeck, R Heim, R Y Tsien. Proc Natl Acad Sci U S A 1999
621
12

In Vivo Evidence for a Lactate Gradient from Astrocytes to Neurons.
Philipp Mächler, Matthias T Wyss, Maha Elsayed, Jillian Stobart, Robin Gutierrez, Alexandra von Faber-Castell, Vincens Kaelin, Marc Zuend, Alejandro San Martín, Ignacio Romero-Gómez,[...]. Cell Metab 2016
292
12

Neuronal Stimulation Triggers Neuronal Glycolysis and Not Lactate Uptake.
Carlos Manlio Díaz-García, Rebecca Mongeon, Carolina Lahmann, Dorothy Koveal, Hannah Zucker, Gary Yellen. Cell Metab 2017
203
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.