A citation-based method for searching scientific literature

Liuling Pei, Guoliang Li, Keith Lindsey, Xianlong Zhang, Maojun Wang. New Phytol 2021
Times Cited: 7







List of co-cited articles
63 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


3D Chromatin Architecture of Large Plant Genomes Determined by Local A/B Compartments.
Pengfei Dong, Xiaoyu Tu, Po-Yu Chu, Peitao Lü, Ning Zhu, Donald Grierson, Baijuan Du, Pinghua Li, Silin Zhong. Mol Plant 2017
139
57

Prominent topologically associated domains differentiate global chromatin packing in rice from Arabidopsis.
Chang Liu, Ying-Juan Cheng, Jia-Wei Wang, Detlef Weigel. Nat Plants 2017
126
57

Evolutionary dynamics of 3D genome architecture following polyploidization in cotton.
Maojun Wang, Pengcheng Wang, Min Lin, Zhengxiu Ye, Guoliang Li, Lili Tu, Chao Shen, Jianying Li, Qingyong Yang, Xianlong Zhang. Nat Plants 2018
84
57

Three-dimensional chromatin packing and positioning of plant genomes.
Ezgi Süheyla Doğan, Chang Liu. Nat Plants 2018
59
57

3D genome architecture coordinates trans and cis regulation of differentially expressed ear and tassel genes in maize.
Yonghao Sun, Liang Dong, Ying Zhang, Da Lin, Weize Xu, Changxiong Ke, Linqian Han, Lulu Deng, Guoliang Li, David Jackson,[...]. Genome Biol 2020
39
57

Chromatin loops associated with active genes and heterochromatin shape rice genome architecture for transcriptional regulation.
Lun Zhao, Shuangqi Wang, Zhilin Cao, Weizhi Ouyang, Qing Zhang, Liang Xie, Ruiqin Zheng, Minrong Guo, Meng Ma, Zhe Hu,[...]. Nat Commun 2019
52
57

Wheat chromatin architecture is organized in genome territories and transcription factories.
Lorenzo Concia, Alaguraj Veluchamy, Juan S Ramirez-Prado, Azahara Martin-Ramirez, Ying Huang, Magali Perez, Severine Domenichini, Natalia Y Rodriguez Granados, Soonkap Kim, Thomas Blein,[...]. Genome Biol 2020
54
57

Biased gene retention during diploidization in Brassica linked to three-dimensional genome organization.
Ting Xie, Fu-Gui Zhang, Hong-Yu Zhang, Xiao-Tao Wang, Ji-Hong Hu, Xiao-Ming Wu. Nat Plants 2019
28
57

Chromatin interaction maps reveal genetic regulation for quantitative traits in maize.
Yong Peng, Dan Xiong, Lun Zhao, Weizhi Ouyang, Shuangqi Wang, Jun Sun, Qing Zhang, Pengpeng Guan, Liang Xie, Wenqiang Li,[...]. Nat Commun 2019
60
42

Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis.
Suhua Feng, Shawn J Cokus, Veit Schubert, Jixian Zhai, Matteo Pellegrini, Steven E Jacobsen. Mol Cell 2014
209
42


Genome-wide analysis of local chromatin packing in Arabidopsis thaliana.
Congmao Wang, Chang Liu, Damian Roqueiro, Dominik Grimm, Rebecca Schwab, Claude Becker, Christa Lanz, Detlef Weigel. Genome Res 2015
181
42

Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions.
Darío G Lupiáñez, Katerina Kraft, Verena Heinrich, Peter Krawitz, Francesco Brancati, Eva Klopocki, Denise Horn, Hülya Kayserili, John M Opitz, Renata Laxova,[...]. Cell 2015
42

Unraveling the 3D Genome Architecture in Plants: Present and Future.
Weizhi Ouyang, Dan Xiong, Guoliang Li, Xingwang Li. Mol Plant 2020
19
42

Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
42

3D genome organization: a role for phase separation and loop extrusion?
Maike Stam, Mariliis Tark-Dame, Paul Fransz. Curr Opin Plant Biol 2019
34
42

Nonrandom domain organization of the Arabidopsis genome at the nuclear periphery.
Xiuli Bi, Ying-Juan Cheng, Bo Hu, Xiaoli Ma, Rui Wu, Jia-Wei Wang, Chang Liu. Genome Res 2017
68
42

Spatial partitioning of the regulatory landscape of the X-inactivation centre.
Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat,[...]. Nature 2012
42

Genome-wide Hi-C analysis reveals extensive hierarchical chromatin interactions in rice.
Qianli Dong, Ning Li, Xiaochong Li, Zan Yuan, Dejian Xie, Xiaofei Wang, Jianing Li, Yanan Yu, Jinbin Wang, Baoxu Ding,[...]. Plant J 2018
77
42

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
42

Homology-mediated inter-chromosomal interactions in hexaploid wheat lead to specific subgenome territories following polyploidization and introgression.
Jizeng Jia, Yilin Xie, Jingfei Cheng, Chuizheng Kong, Meiyue Wang, Lifeng Gao, Fei Zhao, Jingyu Guo, Kai Wang, Guangwei Li,[...]. Genome Biol 2021
17
42

Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid.
Wangsheng Zhu, Bo Hu, Claude Becker, Ezgi Süheyla Doğan, Kenneth Wayne Berendzen, Detlef Weigel, Chang Liu. Genome Biol 2017
58
42

Plant lamin-like proteins mediate chromatin tethering at the nuclear periphery.
Bo Hu, Nan Wang, Xiuli Bi, Ezgi Süheyla Karaaslan, Anna-Lena Weber, Wangsheng Zhu, Kenneth Wayne Berendzen, Chang Liu. Genome Biol 2019
49
28

Live cell imaging of low- and non-repetitive chromosome loci using CRISPR-Cas9.
Peiwu Qin, Mahmut Parlak, Cem Kuscu, Jigar Bandaria, Mustafa Mir, Karol Szlachta, Ritambhara Singh, Xavier Darzacq, Ahmet Yildiz, Mazhar Adli. Nat Commun 2017
135
28

A chromosome conformation capture ordered sequence of the barley genome.
Martin Mascher, Heidrun Gundlach, Axel Himmelbach, Sebastian Beier, Sven O Twardziok, Thomas Wicker, Volodymyr Radchuk, Christoph Dockter, Pete E Hedley, Joanne Russell,[...]. Nature 2017
695
28

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).
Marieke Simonis, Petra Klous, Erik Splinter, Yuri Moshkin, Rob Willemsen, Elzo de Wit, Bas van Steensel, Wouter de Laat. Nat Genet 2006
920
28

Heat stress-induced transposon activation correlates with 3D chromatin organization rearrangement in Arabidopsis.
Linhua Sun, Yuqing Jing, Xinyu Liu, Qi Li, Zhihui Xue, Zhukuan Cheng, Daowen Wang, Hang He, Weiqiang Qian. Nat Commun 2020
41
28

Comparison of computational methods for the identification of topologically associating domains.
Marie Zufferey, Daniele Tavernari, Elisa Oricchio, Giovanni Ciriello. Genome Biol 2018
91
28

Evolutionarily Conserved Principles Predict 3D Chromatin Organization.
M Jordan Rowley, Michael H Nichols, Xiaowen Lyu, Masami Ando-Kuri, I Sarahi M Rivera, Karen Hermetz, Ping Wang, Yijun Ruan, Victor G Corces. Mol Cell 2017
265
28

An oestrogen-receptor-alpha-bound human chromatin interactome.
Melissa J Fullwood, Mei Hui Liu, You Fu Pan, Jun Liu, Han Xu, Yusoff Bin Mohamed, Yuriy L Orlov, Stoyan Velkov, Andrea Ho, Poh Huay Mei,[...]. Nature 2009
28

Tissue- and expression level-specific chromatin looping at maize b1 epialleles.
Marieke Louwers, Rechien Bader, Max Haring, Roel van Driel, Wouter de Laat, Maike Stam. Plant Cell 2009
104
28

3D structures of individual mammalian genomes studied by single-cell Hi-C.
Tim J Stevens, David Lando, Srinjan Basu, Liam P Atkinson, Yang Cao, Steven F Lee, Martin Leeb, Kai J Wohlfahrt, Wayne Boucher, Aoife O'Shaughnessy-Kirwan,[...]. Nature 2017
435
28

The matrix revolutions: towards the decoding of the plant chromatin three-dimensional reality.
Ying Huang, Natalia Yaneth Rodriguez-Granados, David Latrasse, Cecile Raynaud, Moussa Benhamed, Juan Sebastian Ramirez-Prado. J Exp Bot 2020
8
28

HiChIP: efficient and sensitive analysis of protein-directed genome architecture.
Maxwell R Mumbach, Adam J Rubin, Ryan A Flynn, Chao Dai, Paul A Khavari, William J Greenleaf, Howard Y Chang. Nat Methods 2016
507
28


Three-dimensional folding and functional organization principles of the Drosophila genome.
Tom Sexton, Eitan Yaffe, Ephraim Kenigsberg, Frédéric Bantignies, Benjamin Leblanc, Michael Hoichman, Hugues Parrinello, Amos Tanay, Giacomo Cavalli. Cell 2012
28


Single-cell three-dimensional genome structures of rice gametes and unicellular zygotes.
Shaoli Zhou, Wei Jiang, Yu Zhao, Dao-Xiu Zhou. Nat Plants 2019
37
28

Formation of Chromosomal Domains by Loop Extrusion.
Geoffrey Fudenberg, Maxim Imakaev, Carolyn Lu, Anton Goloborodko, Nezar Abdennur, Leonid A Mirny. Cell Rep 2016
887
28

Advances in Chromatin Imaging at Kilobase-Scale Resolution.
Alistair Boettiger, Sedona Murphy. Trends Genet 2020
55
28

Capturing chromosome conformation.
Job Dekker, Karsten Rippe, Martijn Dekker, Nancy Kleckner. Science 2002
28

Principles of genome folding into topologically associating domains.
Quentin Szabo, Frédéric Bantignies, Giacomo Cavalli. Sci Adv 2019
225
28


The BAF60 subunit of the SWI/SNF chromatin-remodeling complex directly controls the formation of a gene loop at FLOWERING LOCUS C in Arabidopsis.
Teddy Jégu, David Latrasse, Marianne Delarue, Heribert Hirt, Séverine Domenichini, Federico Ariel, Martin Crespi, Catherine Bergounioux, Cécile Raynaud, Moussa Benhamed. Plant Cell 2014
64
28

Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C.
Tsung-Han S Hsieh, Assaf Weiner, Bryan Lajoie, Job Dekker, Nir Friedman, Oliver J Rando. Cell 2015
337
28

Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment.
Jim R Hughes, Nigel Roberts, Simon McGowan, Deborah Hay, Eleni Giannoulatou, Magnus Lynch, Marco De Gobbi, Stephen Taylor, Richard Gibbons, Douglas R Higgs. Nat Genet 2014
299
28

Chromatin domains in space and their functional implications.
Frédéric Pontvianne, Chang Liu. Curr Opin Plant Biol 2020
19
28

Simultaneous profiling of 3D genome structure and DNA methylation in single human cells.
Dong-Sung Lee, Chongyuan Luo, Jingtian Zhou, Sahaana Chandran, Angeline Rivkin, Anna Bartlett, Joseph R Nery, Conor Fitzpatrick, Carolyn O'Connor, Jesse R Dixon,[...]. Nat Methods 2019
92
28

Genome-wide analysis of chromatin packing in Arabidopsis thaliana at single-gene resolution.
Chang Liu, Congmao Wang, George Wang, Claude Becker, Maricris Zaidem, Detlef Weigel. Genome Res 2016
129
28

Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.
Zhihu Zhao, Gholamreza Tavoosidana, Mikael Sjölinder, Anita Göndör, Piero Mariano, Sha Wang, Chandrasekhar Kanduri, Magda Lezcano, Kuljeet Singh Sandhu, Umashankar Singh,[...]. Nat Genet 2006
656
28


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.