A citation-based method for searching scientific literature

Philip J M Brouwer, Aleksandar Antanasijevic, Marlon de Gast, Joel D Allen, Tom P L Bijl, Anila Yasmeen, Rashmi Ravichandran, Judith A Burger, Gabriel Ozorowski, Jonathan L Torres, Celia LaBranche, David C Montefiori, Rajesh P Ringe, Marit J van Gils, John P Moore, Per Johan Klasse, Max Crispin, Neil P King, Andrew B Ward, Rogier W Sanders. NPJ Vaccines 2021
Times Cited: 11







List of co-cited articles
110 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A next-generation cleaved, soluble HIV-1 Env trimer, BG505 SOSIP.664 gp140, expresses multiple epitopes for broadly neutralizing but not non-neutralizing antibodies.
Rogier W Sanders, Ronald Derking, Albert Cupo, Jean-Philippe Julien, Anila Yasmeen, Natalia de Val, Helen J Kim, Claudia Blattner, Alba Torrents de la Peña, Jacob Korzun,[...]. PLoS Pathog 2013
616
54

HIV-1 VACCINES. HIV-1 neutralizing antibodies induced by native-like envelope trimers.
Rogier W Sanders, Marit J van Gils, Ronald Derking, Devin Sok, Thomas J Ketas, Judith A Burger, Gabriel Ozorowski, Albert Cupo, Cassandra Simonich, Leslie Goo,[...]. Science 2015
375
54

Vaccination with Glycan-Modified HIV NFL Envelope Trimer-Liposomes Elicits Broadly Neutralizing Antibodies to Multiple Sites of Vulnerability.
Viktoriya Dubrovskaya, Karen Tran, Gabriel Ozorowski, Javier Guenaga, Richard Wilson, Shridhar Bale, Christopher A Cottrell, Hannah L Turner, Gemma Seabright, Sijy O'Dell,[...]. Immunity 2019
58
54

Mapping Polyclonal Antibody Responses in Non-human Primates Vaccinated with HIV Env Trimer Subunit Vaccines.
Bartek Nogal, Matteo Bianchi, Christopher A Cottrell, Robert N Kirchdoerfer, Leigh M Sewall, Hannah L Turner, Fangzhu Zhao, Devin Sok, Dennis R Burton, Lars Hangartner,[...]. Cell Rep 2020
43
45

Antibody neutralization and escape by HIV-1.
Xiping Wei, Julie M Decker, Shuyi Wang, Huxiong Hui, John C Kappes, Xiaoyun Wu, Jesus F Salazar-Gonzalez, Maria G Salazar, J Michael Kilby, Michael S Saag,[...]. Nature 2003
45

Epitopes for neutralizing antibodies induced by HIV-1 envelope glycoprotein BG505 SOSIP trimers in rabbits and macaques.
P J Klasse, Thomas J Ketas, Christopher A Cottrell, Gabriel Ozorowski, Gargi Debnath, Diawoye Camara, Erik Francomano, Pavel Pugach, Rajesh P Ringe, Celia C LaBranche,[...]. PLoS Pathog 2018
68
45

Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates.
Christopher A Cottrell, Jelle van Schooten, Charles A Bowman, Meng Yuan, David Oyen, Mia Shin, Robert Morpurgo, Patricia van der Woude, Mariëlle van Breemen, Jonathan L Torres,[...]. PLoS Pathog 2020
36
36

Improving the Immunogenicity of Native-like HIV-1 Envelope Trimers by Hyperstabilization.
Alba Torrents de la Peña, Jean-Philippe Julien, Steven W de Taeye, Fernando Garces, Miklos Guttman, Gabriel Ozorowski, Laura K Pritchard, Anna-Janina Behrens, Eden P Go, Judith A Burger,[...]. Cell Rep 2017
108
36

Elicitation of Robust Tier 2 Neutralizing Antibody Responses in Nonhuman Primates by HIV Envelope Trimer Immunization Using Optimized Approaches.
Matthias Pauthner, Colin Havenar-Daughton, Devin Sok, Joseph P Nkolola, Raiza Bastidas, Archana V Boopathy, Diane G Carnathan, Abishek Chandrashekar, Kimberly M Cirelli, Christopher A Cottrell,[...]. Immunity 2017
191
36

Enhancing and shaping the immunogenicity of native-like HIV-1 envelope trimers with a two-component protein nanoparticle.
Philip J M Brouwer, Aleksandar Antanasijevic, Zachary Berndsen, Anila Yasmeen, Brooke Fiala, Tom P L Bijl, Ilja Bontjer, Jacob B Bale, William Sheffler, Joel D Allen,[...]. Nat Commun 2019
73
36

Structural and functional evaluation of de novo-designed, two-component nanoparticle carriers for HIV Env trimer immunogens.
Aleksandar Antanasijevic, George Ueda, Philip J M Brouwer, Jeffrey Copps, Deli Huang, Joel D Allen, Christopher A Cottrell, Anila Yasmeen, Leigh M Sewall, Ilja Bontjer,[...]. PLoS Pathog 2020
22
36

Rational HIV immunogen design to target specific germline B cell receptors.
Joseph Jardine, Jean-Philippe Julien, Sergey Menis, Takayuki Ota, Oleksandr Kalyuzhniy, Andrew McGuire, Devin Sok, Po-Ssu Huang, Skye MacPherson, Meaghan Jones,[...]. Science 2013
486
36

Stabilization of the soluble, cleaved, trimeric form of the envelope glycoprotein complex of human immunodeficiency virus type 1.
Rogier W Sanders, Mika Vesanen, Norbert Schuelke, Aditi Master, Linnea Schiffner, Roopa Kalyanaraman, Maciej Paluch, Ben Berkhout, Paul J Maddon, William C Olson,[...]. J Virol 2002
346
27

An HIV-1 antibody from an elite neutralizer implicates the fusion peptide as a site of vulnerability.
Marit J van Gils, Tom L G M van den Kerkhof, Gabriel Ozorowski, Christopher A Cottrell, Devin Sok, Matthias Pauthner, Jesper Pallesen, Natalia de Val, Anila Yasmeen, Steven W de Taeye,[...]. Nat Microbiol 2016
96
27

HIV Vaccine Design to Target Germline Precursors of Glycan-Dependent Broadly Neutralizing Antibodies.
Jon M Steichen, Daniel W Kulp, Talar Tokatlian, Amelia Escolano, Pia Dosenovic, Robyn L Stanfield, Laura E McCoy, Gabriel Ozorowski, Xiaozhen Hu, Oleksandr Kalyuzhniy,[...]. Immunity 2016
216
27

Holes in the Glycan Shield of the Native HIV Envelope Are a Target of Trimer-Elicited Neutralizing Antibodies.
Laura E McCoy, Marit J van Gils, Gabriel Ozorowski, Terrence Messmer, Bryan Briney, James E Voss, Daniel W Kulp, Matthew S Macauley, Devin Sok, Matthias Pauthner,[...]. Cell Rep 2016
151
27

Immunogenicity in Rabbits of HIV-1 SOSIP Trimers from Clades A, B, and C, Given Individually, Sequentially, or in Combination.
Alba Torrents de la Peña, Steven W de Taeye, Kwinten Sliepen, Celia C LaBranche, Judith A Burger, Edith E Schermer, David C Montefiori, John P Moore, Per Johan Klasse, Rogier W Sanders. J Virol 2018
49
27

Broad neutralization coverage of HIV by multiple highly potent antibodies.
Laura M Walker, Michael Huber, Katie J Doores, Emilia Falkowska, Robert Pejchal, Jean-Philippe Julien, Sheng-Kai Wang, Alejandra Ramos, Po-Ying Chan-Hui, Matthew Moyle,[...]. Nature 2011
27

Immunogenicity of Stabilized HIV-1 Envelope Trimers with Reduced Exposure of Non-neutralizing Epitopes.
Steven W de Taeye, Gabriel Ozorowski, Alba Torrents de la Peña, Miklos Guttman, Jean-Philippe Julien, Tom L G M van den Kerkhof, Judith A Burger, Laura K Pritchard, Pavel Pugach, Anila Yasmeen,[...]. Cell 2015
238
27

Rational design of envelope identifies broadly neutralizing human monoclonal antibodies to HIV-1.
Xueling Wu, Zhi-Yong Yang, Yuxing Li, Carl-Magnus Hogerkorp, William R Schief, Michael S Seaman, Tongqing Zhou, Stephen D Schmidt, Lan Wu, Ling Xu,[...]. Science 2010
27

Structure and immunogenicity of a stabilized HIV-1 envelope trimer based on a group-M consensus sequence.
Kwinten Sliepen, Byung Woo Han, Ilja Bontjer, Petra Mooij, Fernando Garces, Anna-Janina Behrens, Kimmo Rantalainen, Sonu Kumar, Anita Sarkar, Philip J M Brouwer,[...]. Nat Commun 2019
63
27

Induction of Potent Neutralizing Antibody Responses by a Designed Protein Nanoparticle Vaccine for Respiratory Syncytial Virus.
Jessica Marcandalli, Brooke Fiala, Sebastian Ols, Michela Perotti, Willem de van der Schueren, Joost Snijder, Edgar Hodge, Mark Benhaim, Rashmi Ravichandran, Lauren Carter,[...]. Cell 2019
177
27

Self-assembling influenza nanoparticle vaccines elicit broadly neutralizing H1N1 antibodies.
Masaru Kanekiyo, Chih-Jen Wei, Hadi M Yassine, Patrick M McTamney, Jeffrey C Boyington, James R R Whittle, Srinivas S Rao, Wing-Pui Kong, Lingshu Wang, Gary J Nabel. Nature 2013
439
27

Electron-Microscopy-Based Epitope Mapping Defines Specificities of Polyclonal Antibodies Elicited during HIV-1 BG505 Envelope Trimer Immunization.
Matteo Bianchi, Hannah L Turner, Bartek Nogal, Christopher A Cottrell, David Oyen, Matthias Pauthner, Raiza Bastidas, Rebecca Nedellec, Laura E McCoy, Ian A Wilson,[...]. Immunity 2018
91
27

Presenting native-like trimeric HIV-1 antigens with self-assembling nanoparticles.
Linling He, Natalia de Val, Charles D Morris, Nemil Vora, Therese C Thinnes, Leopold Kong, Parisa Azadnia, Devin Sok, Bin Zhou, Dennis R Burton,[...]. Nat Commun 2016
99
27


Targeted selection of HIV-specific antibody mutations by engineering B cell maturation.
Kevin O Saunders, Kevin Wiehe, Ming Tian, Priyamvada Acharya, Todd Bradley, S Munir Alam, Eden P Go, Richard Scearce, Laura Sutherland, Rory Henderson,[...]. Science 2019
64
27

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
27

Epitope-based vaccine design yields fusion peptide-directed antibodies that neutralize diverse strains of HIV-1.
Kai Xu, Priyamvada Acharya, Rui Kong, Cheng Cheng, Gwo-Yu Chuang, Kevin Liu, Mark K Louder, Sijy O'Dell, Reda Rawi, Mallika Sastry,[...]. Nat Med 2018
156
27

Slow Delivery Immunization Enhances HIV Neutralizing Antibody and Germinal Center Responses via Modulation of Immunodominance.
Kimberly M Cirelli, Diane G Carnathan, Bartek Nogal, Jacob T Martin, Oscar L Rodriguez, Amit A Upadhyay, Chiamaka A Enemuo, Etse H Gebru, Yury Choe, Federico Viviano,[...]. Cell 2019
142
27

Mapping Neutralizing Antibody Epitope Specificities to an HIV Env Trimer in Immunized and in Infected Rhesus Macaques.
Fangzhu Zhao, Collin Joyce, Alison Burns, Bartek Nogal, Christopher A Cottrell, Alejandra Ramos, Trevor Biddle, Matthias Pauthner, Rebecca Nedellec, Huma Qureshi,[...]. Cell Rep 2020
10
30

New tools for automated high-resolution cryo-EM structure determination in RELION-3.
Jasenko Zivanov, Takanori Nakane, Björn O Forsberg, Dari Kimanius, Wim Jh Hagen, Erik Lindahl, Sjors Hw Scheres. Elife 2018
27


HIV-1 VACCINES. Priming a broadly neutralizing antibody response to HIV-1 using a germline-targeting immunogen.
Joseph G Jardine, Takayuki Ota, Devin Sok, Matthias Pauthner, Daniel W Kulp, Oleksandr Kalyuzhniy, Patrick D Skog, Theresa C Thinnes, Deepika Bhullar, Bryan Briney,[...]. Science 2015
246
27

Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus.
Hua-Xin Liao, Rebecca Lynch, Tongqing Zhou, Feng Gao, S Munir Alam, Scott D Boyd, Andrew Z Fire, Krishna M Roskin, Chaim A Schramm, Zhenhai Zhang,[...]. Nature 2013
705
27

Sequential and Simultaneous Immunization of Rabbits with HIV-1 Envelope Glycoprotein SOSIP.664 Trimers from Clades A, B and C.
P J Klasse, Celia C LaBranche, Thomas J Ketas, Gabriel Ozorowski, Albert Cupo, Pavel Pugach, Rajesh P Ringe, Michael Golabek, Marit J van Gils, Miklos Guttman,[...]. PLoS Pathog 2016
95
18

Structural delineation of a quaternary, cleavage-dependent epitope at the gp41-gp120 interface on intact HIV-1 Env trimers.
Claudia Blattner, Jeong Hyun Lee, Kwinten Sliepen, Ronald Derking, Emilia Falkowska, Alba Torrents de la Peña, Albert Cupo, Jean-Philippe Julien, Marit van Gils, Peter S Lee,[...]. Immunity 2014
257
18

Global site-specific N-glycosylation analysis of HIV envelope glycoprotein.
Liwei Cao, Jolene K Diedrich, Daniel W Kulp, Matthias Pauthner, Lin He, Sung-Kyu Robin Park, Devin Sok, Ching Yao Su, Claire M Delahunty, Sergey Menis,[...]. Nat Commun 2017
118
18

Optimizing the production and affinity purification of HIV-1 envelope glycoprotein SOSIP trimers from transiently transfected CHO cells.
Albert Cupo, Victor M Cruz Portillo, Paul Gelfand, Anila Yasmeen, P J Klasse, John P Moore. PLoS One 2019
7
28

Immunization expands B cells specific to HIV-1 V3 glycan in mice and macaques.
Amelia Escolano, Harry B Gristick, Morgan E Abernathy, Julia Merkenschlager, Rajeev Gautam, Thiago Y Oliveira, Joy Pai, Anthony P West, Christopher O Barnes, Alexander A Cohen,[...]. Nature 2019
86
18

Recombinant HIV envelope trimer selects for quaternary-dependent antibodies targeting the trimer apex.
Devin Sok, Marit J van Gils, Matthias Pauthner, Jean-Philippe Julien, Karen L Saye-Francisco, Jessica Hsueh, Bryan Briney, Jeong Hyun Lee, Khoa M Le, Peter S Lee,[...]. Proc Natl Acad Sci U S A 2014
229
18

Env Exceptionalism: Why Are HIV-1 Env Glycoproteins Atypical Immunogens?
P J Klasse, Gabriel Ozorowski, Rogier W Sanders, John P Moore. Cell Host Microbe 2020
24
18

Glycan clustering stabilizes the mannose patch of HIV-1 and preserves vulnerability to broadly neutralizing antibodies.
Laura K Pritchard, Daniel I R Spencer, Louise Royle, Camille Bonomelli, Gemma E Seabright, Anna-Janina Behrens, Daniel W Kulp, Sergey Menis, Stefanie A Krumm, D Cameron Dunlop,[...]. Nat Commun 2015
92
18

Design and structure of two HIV-1 clade C SOSIP.664 trimers that increase the arsenal of native-like Env immunogens.
Jean-Philippe Julien, Jeong Hyun Lee, Gabriel Ozorowski, Yuanzi Hua, Alba Torrents de la Peña, Steven W de Taeye, Travis Nieusma, Albert Cupo, Anila Yasmeen, Michael Golabek,[...]. Proc Natl Acad Sci U S A 2015
96
18

Differential processing of HIV envelope glycans on the virus and soluble recombinant trimer.
Liwei Cao, Matthias Pauthner, Raiees Andrabi, Kimmo Rantalainen, Zachary Berndsen, Jolene K Diedrich, Sergey Menis, Devin Sok, Raiza Bastidas, Sung-Kyu Robin Park,[...]. Nat Commun 2018
80
18

Glycan Masking Focuses Immune Responses to the HIV-1 CD4-Binding Site and Enhances Elicitation of VRC01-Class Precursor Antibodies.
Hongying Duan, Xuejun Chen, Jeffrey C Boyington, Cheng Cheng, Yi Zhang, Alexander J Jafari, Tyler Stephens, Yaroslav Tsybovsky, Oleksandr Kalyuzhniy, Peng Zhao,[...]. Immunity 2018
64
18

Protein and Glycan Mimicry in HIV Vaccine Design.
Gemma E Seabright, Katie J Doores, Dennis R Burton, Max Crispin. J Mol Biol 2019
50
18

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination.
Ali Punjani, John L Rubinstein, David J Fleet, Marcus A Brubaker. Nat Methods 2017
18

Closing and Opening Holes in the Glycan Shield of HIV-1 Envelope Glycoprotein SOSIP Trimers Can Redirect the Neutralizing Antibody Response to the Newly Unmasked Epitopes.
Rajesh P Ringe, Pavel Pugach, Christopher A Cottrell, Celia C LaBranche, Gemma E Seabright, Thomas J Ketas, Gabriel Ozorowski, Sonu Kumar, Anna Schorcht, Marit J van Gils,[...]. J Virol 2019
43
18

A native-like SOSIP.664 trimer based on an HIV-1 subtype B env gene.
Pavel Pugach, Gabriel Ozorowski, Albert Cupo, Rajesh Ringe, Anila Yasmeen, Natalia de Val, Ronald Derking, Helen J Kim, Jacob Korzun, Michael Golabek,[...]. J Virol 2015
178
18


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.