A citation-based method for searching scientific literature

Nicoletta Caronni, Elisa Montaldo, Luca Mezzanzanica, Francesco Cilenti, Marco Genua, Renato Ostuni. Immunol Rev 2021
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ontogeny and heterogeneity of innate lymphoid cells and the noncoding genome.
Michaël F Michieletto, Jorge Henao-Mejia. Immunol Rev 2021
4
50




Epigenetic regulation of T cell adaptive immunity.
Adolfo B Frias, Shannon K Boi, Xin Lan, Ben Youngblood. Immunol Rev 2021
3
50

Established and emergent roles for Ikaros transcription factors in lymphoid cell development and function.
Kaitlin A Read, Devin M Jones, Aharon G Freud, Kenneth J Oestreich. Immunol Rev 2021
4
50

Developmental changes in the rules for B cell selection.
Stefano Vergani, Joan Yuan. Immunol Rev 2021
1
100


Signaling-to-chromatin pathways in the immune system.
Alexia Martínez de Paz, Steven Zvi Josefowicz. Immunol Rev 2021
2
50

Conversations that count: Cellular interactions that drive T cell fate.
Brigette C Duckworth, Joanna R Groom. Immunol Rev 2021
7
50



Cell-intrinsic mechanisms to restrain inflammatory responses in T lymphocytes.
Emina Džafo, Niccolò Bianchi, Silvia Monticelli. Immunol Rev 2021
1
100


Neuro-immune Interactions Drive Tissue Programming in Intestinal Macrophages.
Ilana Gabanyi, Paul A Muller, Linda Feighery, Thiago Y Oliveira, Frederico A Costa-Pinto, Daniel Mucida. Cell 2016
286
50

Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding.
Simon C Biddie, Sam John, Pete J Sabo, Robert E Thurman, Thomas A Johnson, R Louis Schiltz, Tina B Miranda, Myong-Hee Sung, Saskia Trump, Stafford L Lightman,[...]. Mol Cell 2011
297
50

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
50

Tumor immunoevasion via acidosis-dependent induction of regulatory tumor-associated macrophages.
Toszka Bohn, Steffen Rapp, Natascha Luther, Matthias Klein, Till-Julius Bruehl, Nobuhiko Kojima, Pamela Aranda Lopez, Jennifer Hahlbrock, Sabine Muth, Shogo Endo,[...]. Nat Immunol 2018
113
50

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data.
Lihua J Zhu, Claude Gazin, Nathan D Lawson, Hervé Pagès, Simon M Lin, David S Lapointe, Michael R Green. BMC Bioinformatics 2010
484
50

Phagocytosis-shielded lentiviral vectors improve liver gene therapy in nonhuman primates.
Michela Milani, Andrea Annoni, Federica Moalli, Tongyao Liu, Daniela Cesana, Andrea Calabria, Sara Bartolaccini, Mauro Biffi, Fabio Russo, Ilaria Visigalli,[...]. Sci Transl Med 2019
25
50

CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing.
Kornel Labun, Tessa G Montague, Maximilian Krause, Yamila N Torres Cleuren, Håkon Tjeldnes, Eivind Valen. Nucleic Acids Res 2019
251
50

Latent enhancers activated by stimulation in differentiated cells.
Renato Ostuni, Viviana Piccolo, Iros Barozzi, Sara Polletti, Alberto Termanini, Silvia Bonifacio, Alessia Curina, Elena Prosperini, Serena Ghisletti, Gioacchino Natoli. Cell 2013
486
50

Co-stimulation with opposing macrophage polarization cues leads to orthogonal secretion programs in individual cells.
Andrés R Muñoz-Rojas, Ilana Kelsey, Jenna L Pappalardo, Meibin Chen, Kathryn Miller-Jensen. Nat Commun 2021
8
50

Prostaglandin E2 regulates vertebrate haematopoietic stem cell homeostasis.
Trista E North, Wolfram Goessling, Carl R Walkley, Claudia Lengerke, Kamden R Kopani, Allegra M Lord, Gerhard J Weber, Teresa V Bowman, Il-Ho Jang, Tilo Grosser,[...]. Nature 2007
793
50

Mitochondrial Membrane Potential Regulates Nuclear Gene Expression in Macrophages Exposed to Prostaglandin E2.
David E Sanin, Mai Matsushita, Ramon I Klein Geltink, Katarzyna M Grzes, Nikki van Teijlingen Bakker, Mauro Corrado, Agnieszka M Kabat, Michael D Buck, Jing Qiu, Simon J Lawless,[...]. Immunity 2018
42
50

A Stringent Systems Approach Uncovers Gene-Specific Mechanisms Regulating Inflammation.
Ann-Jay Tong, Xin Liu, Brandon J Thomas, Michelle M Lissner, Mairead R Baker, Madhavi D Senagolage, Amanda L Allred, Grant D Barish, Stephen T Smale. Cell 2016
92
50

Fatty acid transport protein 2 reprograms neutrophils in cancer.
Filippo Veglia, Vladimir A Tyurin, Maria Blasi, Alessandra De Leo, Andrew V Kossenkov, Laxminarasimha Donthireddy, Tsun Ki Jerrick To, Zach Schug, Subhasree Basu, Fang Wang,[...]. Nature 2019
170
50


CD14 controls the LPS-induced endocytosis of Toll-like receptor 4.
Ivan Zanoni, Renato Ostuni, Lorri R Marek, Simona Barresi, Roman Barbalat, Gregory M Barton, Francesca Granucci, Jonathan C Kagan. Cell 2011
536
50

Cyclooxygenase-Dependent Tumor Growth through Evasion of Immunity.
Santiago Zelenay, Annemarthe G van der Veen, Jan P Böttcher, Kathryn J Snelgrove, Neil Rogers, Sophie E Acton, Probir Chakravarty, Maria Romina Girotti, Richard Marais, Sergio A Quezada,[...]. Cell 2015
514
50

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
50

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
50

Cross-Species Single-Cell Analysis Reveals Divergence of the Primate Microglia Program.
Laufey Geirsdottir, Eyal David, Hadas Keren-Shaul, Assaf Weiner, Stefan Cornelius Bohlen, Jana Neuber, Adam Balic, Amir Giladi, Fadi Sheban, Charles-Antoine Dutertre,[...]. Cell 2019
99
50

Myeloid ERK5 deficiency suppresses tumor growth by blocking protumor macrophage polarization via STAT3 inhibition.
Emanuele Giurisato, Qiuping Xu, Silvia Lonardi, Brian Telfer, Ilaria Russo, Adam Pearson, Katherine G Finegan, Wenbin Wang, Jinhua Wang, Nathanael S Gray,[...]. Proc Natl Acad Sci U S A 2018
39
50

Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment.
Yonit Lavin, Deborah Winter, Ronnie Blecher-Gonen, Eyal David, Hadas Keren-Shaul, Miriam Merad, Steffen Jung, Ido Amit. Cell 2014
50

Control of inducible gene expression by signal-dependent transcriptional elongation.
Diana C Hargreaves, Tiffany Horng, Ruslan Medzhitov. Cell 2009
469
50

Anti-inflammatory effect of IL-10 mediated by metabolic reprogramming of macrophages.
W K Eddie Ip, Namiko Hoshi, Dror S Shouval, Scott Snapper, Ruslan Medzhitov. Science 2017
497
50

Cas9+ conditionally-immortalized macrophages as a tool for bacterial pathogenesis and beyond.
Allison W Roberts, Lauren M Popov, Gabriel Mitchell, Krystal L Ching, Daniel J Licht, Guillaume Golovkine, Gregory M Barton, Jeffery S Cox. Elife 2019
8
50

PGE2 induced in and released by dying cells functions as an inhibitory DAMP.
Sho Hangai, Tomoka Ao, Yoshitaka Kimura, Kosuke Matsuki, Takeshi Kawamura, Hideo Negishi, Junko Nishio, Tatsuhiko Kodama, Tadatsugu Taniguchi, Hideyuki Yanai. Proc Natl Acad Sci U S A 2016
61
50

Identification and characterization of enhancers controlling the inflammatory gene expression program in macrophages.
Serena Ghisletti, Iros Barozzi, Flore Mietton, Sara Polletti, Francesca De Santa, Elisa Venturini, Lorna Gregory, Lorne Lonie, Adeline Chew, Chia-Lin Wei,[...]. Immunity 2010
450
50

deepTools: a flexible platform for exploring deep-sequencing data.
Fidel Ramírez, Friederike Dündar, Sarah Diehl, Björn A Grüning, Thomas Manke. Nucleic Acids Res 2014
961
50

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
50

NK Cells Stimulate Recruitment of cDC1 into the Tumor Microenvironment Promoting Cancer Immune Control.
Jan P Böttcher, Eduardo Bonavita, Probir Chakravarty, Hanna Blees, Mar Cabeza-Cabrerizo, Stefano Sammicheli, Neil C Rogers, Erik Sahai, Santiago Zelenay, Caetano Reis e Sousa. Cell 2018
553
50

Prostaglandin E2 is essential for efficacious skeletal muscle stem-cell function, augmenting regeneration and strength.
Andrew T V Ho, Adelaida R Palla, Matthew R Blake, Nora D Yucel, Yu Xin Wang, Klas E G Magnusson, Colin A Holbrook, Peggy E Kraft, Scott L Delp, Helen M Blau. Proc Natl Acad Sci U S A 2017
78
50

Interferon-γ Represses M2 Gene Expression in Human Macrophages by Disassembling Enhancers Bound by the Transcription Factor MAF.
Kyuho Kang, Sung Ho Park, Janice Chen, Yu Qiao, Eugenia Giannopoulou, Karen Berg, Adedayo Hanidu, Jun Li, Gerald Nabozny, Keunsoo Kang,[...]. Immunity 2017
78
50



Cyclic AMP selectively uncouples mitogen-activated protein kinase cascades from activating signals.
Gray W Pearson, Svetlana Earnest, Melanie H Cobb. Mol Cell Biol 2006
27
50

Opposing macrophage polarization programs show extensive epigenomic and transcriptional cross-talk.
Viviana Piccolo, Alessia Curina, Marco Genua, Serena Ghisletti, Marta Simonatto, Arianna Sabò, Bruno Amati, Renato Ostuni, Gioacchino Natoli. Nat Immunol 2017
99
50

Transcriptome-based network analysis reveals a spectrum model of human macrophage activation.
Jia Xue, Susanne V Schmidt, Jil Sander, Astrid Draffehn, Wolfgang Krebs, Inga Quester, Dominic De Nardo, Trupti D Gohel, Martina Emde, Lisa Schmidleithner,[...]. Immunity 2014
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.