A citation-based method for searching scientific literature

Fotis L Kyrilis, Dmitry A Semchonok, Ioannis Skalidis, Christian Tüting, Farzad Hamdi, Francis J O'Reilly, Juri Rappsilber, Panagiotis L Kastritis. Cell Rep 2021
Times Cited: 4







List of co-cited articles
60 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Capturing protein communities by structural proteomics in a thermophilic eukaryote.
Panagiotis L Kastritis, Francis J O'Reilly, Thomas Bock, Yuanyue Li, Matt Z Rogon, Katarzyna Buczak, Natalie Romanov, Matthew J Betts, Khanh Huy Bui, Wim J Hagen,[...]. Mol Syst Biol 2017
57
100

Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry.
Fan Liu, Dirk T S Rijkers, Harm Post, Albert J R Heck. Nat Methods 2015
262
75

A Simple Cross-Linking/Mass Spectrometry Workflow for Studying System-wide Protein Interactions.
Michael Götze, Claudio Iacobucci, Christian H Ihling, Andrea Sinz. Anal Chem 2019
50
75

The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes.
G C P van Zundert, J P G L M Rodrigues, M Trellet, C Schmitz, P L Kastritis, E Karaca, A S J Melquiond, M van Dijk, S J de Vries, A M J J Bonvin. J Mol Biol 2016
868
75

Structural analysis of 70S ribosomes by cross-linking/mass spectrometry reveals conformational plasticity.
Christian Tüting, Claudio Iacobucci, Christian H Ihling, Panagiotis L Kastritis, Andrea Sinz. Sci Rep 2020
12
75


A census of human soluble protein complexes.
Pierre C Havugimana, G Traver Hart, Tamás Nepusz, Haixuan Yang, Andrei L Turinsky, Zhihua Li, Peggy I Wang, Daniel R Boutz, Vincent Fong, Sadhna Phanse,[...]. Cell 2012
534
50

Biochemistry. The resolution revolution.
Werner Kühlbrandt. Science 2014
499
50

Enzymatic complexes across scales.
Panagiotis L Kastritis, Anne-Claude Gavin. Essays Biochem 2018
20
50

Panorama of ancient metazoan macromolecular complexes.
Cuihong Wan, Blake Borgeson, Sadhna Phanse, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov,[...]. Nature 2015
269
50

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination.
Ali Punjani, John L Rubinstein, David J Fleet, Marcus A Brubaker. Nat Methods 2017
50

Bottom-up structural proteomics: cryoEM of protein complexes enriched from the cellular milieu.
Chi-Min Ho, Xiaorun Li, Mason Lai, Thomas C Terwilliger, Josh R Beck, James Wohlschlegel, Daniel E Goldberg, Anthony W P Fitzpatrick, Z Hong Zhou. Nat Methods 2020
25
50

Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies.
Daniel Russel, Keren Lasker, Ben Webb, Javier Velázquez-Muriel, Elina Tjioe, Dina Schneidman-Duhovny, Bret Peterson, Andrej Sali. PLoS Biol 2012
317
50

Structural Biology in the Multi-Omics Era.
Caitlyn L McCafferty, Eric J Verbeke, Edward M Marcotte, David W Taylor. J Chem Inf Model 2020
6
50

CORUM: the comprehensive resource of mammalian protein complexes-2019.
Madalina Giurgiu, Julian Reinhard, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Gisela Fobo, Goar Frishman, Corinna Montrone, Andreas Ruepp. Nucleic Acids Res 2019
180
50

Classification of Single Particles from Human Cell Extract Reveals Distinct Structures.
Eric J Verbeke, Anna L Mallam, Kevin Drew, Edward M Marcotte, David W Taylor. Cell Rep 2018
16
50

Unstructured regions of large enzymatic complexes control the availability of metabolites with signaling functions.
Ioannis Skalidis, Christian Tüting, Panagiotis L Kastritis. Cell Commun Signal 2020
3
66

Macromolecular modeling and design in Rosetta: recent methods and frameworks.
Julia Koehler Leman, Brian D Weitzner, Steven M Lewis, Jared Adolf-Bryfogle, Nawsad Alam, Rebecca F Alford, Melanie Aprahamian, David Baker, Kyle A Barlow, Patrick Barth,[...]. Nat Methods 2020
89
50

A 'Build and Retrieve' methodology to simultaneously solve cryo-EM structures of membrane proteins.
Chih-Chia Su, Meinan Lyu, Christopher E Morgan, Jani Reddy Bolla, Carol V Robinson, Edward W Yu. Nat Methods 2021
13
50

Pfam: The protein families database in 2021.
Jaina Mistry, Sara Chuguransky, Lowri Williams, Matloob Qureshi, Gustavo A Salazar, Erik L L Sonnhammer, Silvio C E Tosatto, Lisanna Paladin, Shriya Raj, Lorna J Richardson,[...]. Nucleic Acids Res 2021
257
50

Proteome survey reveals modularity of the yeast cell machinery.
Anne-Claude Gavin, Patrick Aloy, Paola Grandi, Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars Juhl Jensen, Sonja Bastuck, Birgit Dümpelfeld,[...]. Nature 2006
50

Kojak: efficient analysis of chemically cross-linked protein complexes.
Michael R Hoopmann, Alex Zelter, Richard S Johnson, Michael Riffle, Michael J MacCoss, Trisha N Davis, Robert L Moritz. J Proteome Res 2015
101
50


StavroX--a software for analyzing crosslinked products in protein interaction studies.
Michael Götze, Jens Pettelkau, Sabine Schaks, Konstanze Bosse, Christian H Ihling, Fabian Krauth, Romy Fritzsche, Uwe Kühn, Andrea Sinz. J Am Soc Mass Spectrom 2012
230
50

Chemical Crosslinking Mass Spectrometry Analysis of Protein Conformations and Supercomplexes in Heart Tissue.
Juan D Chavez, Chi Fung Lee, Arianne Caudal, Andrew Keller, Rong Tian, James E Bruce. Cell Syst 2018
62
50

Integrative structure and functional anatomy of a nuclear pore complex.
Seung Joong Kim, Javier Fernandez-Martinez, Ilona Nudelman, Yi Shi, Wenzhu Zhang, Barak Raveh, Thurston Herricks, Brian D Slaughter, Joanna A Hogan, Paula Upla,[...]. Nature 2018
200
50

Protein Dynamics in Solution by Quantitative Crosslinking/Mass Spectrometry.
Zhuo A Chen, Juri Rappsilber. Trends Biochem Sci 2018
33
50

A cross-linking/mass spectrometry workflow based on MS-cleavable cross-linkers and the MeroX software for studying protein structures and protein-protein interactions.
Claudio Iacobucci, Michael Götze, Christian H Ihling, Christine Piotrowski, Christian Arlt, Mathias Schäfer, Christoph Hage, Rico Schmidt, Andrea Sinz. Nat Protoc 2018
72
50


Principles for Integrative Structural Biology Studies.
Michael P Rout, Andrej Sali. Cell 2019
81
50

Jwalk and MNXL web server: model validation using restraints from crosslinking mass spectrometry.
Joshua M A Bullock, Konstantinos Thalassinos, Maya Topf. Bioinformatics 2018
15
50

Integrative Structure Modeling: Overview and Assessment.
Merav Braitbard, Dina Schneidman-Duhovny, Nir Kalisman. Annu Rev Biochem 2019
20
50

The role of interfacial lipids in stabilizing membrane protein oligomers.
Kallol Gupta, Joseph A C Donlan, Jonathan T S Hopper, Povilas Uzdavinys, Michael Landreh, Weston B Struwe, David Drew, Andrew J Baldwin, Phillip J Stansfeld, Carol V Robinson. Nature 2017
197
50


A synthetic peptide library for benchmarking crosslinking-mass spectrometry search engines for proteins and protein complexes.
Rebecca Beveridge, Johannes Stadlmann, Josef M Penninger, Karl Mechtler. Nat Commun 2020
24
50


Development of Large-scale Cross-linking Mass Spectrometry.
Helena Maria Barysz, Johan Malmström. Mol Cell Proteomics 2018
24
50

Cleavable cross-linker for protein structure analysis: reliable identification of cross-linking products by tandem MS.
Mathias Q Müller, Frank Dreiocker, Christian H Ihling, Mathias Schäfer, Andrea Sinz. Anal Chem 2010
137
50

Development of a novel cross-linking strategy for fast and accurate identification of cross-linked peptides of protein complexes.
Athit Kao, Chi-li Chiu, Danielle Vellucci, Yingying Yang, Vishal R Patel, Shenheng Guan, Arlo Randall, Pierre Baldi, Scott D Rychnovsky, Lan Huang. Mol Cell Proteomics 2011
210
50

In-cell architecture of an actively transcribing-translating expressome.
Francis J O'Reilly, Liang Xue, Andrea Graziadei, Ludwig Sinn, Swantje Lenz, Dimitry Tegunov, Cedric Blötz, Neil Singh, Wim J H Hagen, Patrick Cramer,[...]. Science 2020
58
50

Structural dynamics of the human COP9 signalosome revealed by cross-linking mass spectrometry and integrative modeling.
Craig Gutierrez, Ilan E Chemmama, Haibin Mao, Clinton Yu, Ignacia Echeverria, Sarah A Block, Scott D Rychnovsky, Ning Zheng, Andrej Sali, Lan Huang. Proc Natl Acad Sci U S A 2020
20
50

Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry.
Franz Herzog, Abdullah Kahraman, Daniel Boehringer, Raymond Mak, Andreas Bracher, Thomas Walzthoeni, Alexander Leitner, Martin Beck, Franz-Ulrich Hartl, Nenad Ban,[...]. Science 2012
295
50

Mitochondrial protein interactome elucidated by chemical cross-linking mass spectrometry.
Devin K Schweppe, Juan D Chavez, Chi Fung Lee, Arianne Caudal, Shane E Kruse, Rudy Stuppard, David J Marcinek, Gerald S Shadel, Rong Tian, James E Bruce. Proc Natl Acad Sci U S A 2017
97
50

Systems structural biology measurements by in vivo cross-linking with mass spectrometry.
Juan D Chavez, Jared P Mohr, Martin Mathay, Xuefei Zhong, Andrew Keller, James E Bruce. Nat Protoc 2019
23
50

Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry.
Zhuo Angel Chen, Anass Jawhari, Lutz Fischer, Claudia Buchen, Salman Tahir, Tomislav Kamenski, Morten Rasmussen, Laurent Lariviere, Jimi-Carlo Bukowski-Wills, Michael Nilges,[...]. EMBO J 2010
299
50


Hydrogen exchange mass spectrometry for studying protein structure and dynamics.
Lars Konermann, Jingxi Pan, Yu-Hong Liu. Chem Soc Rev 2011
479
50

Cross-linking/mass spectrometry to get a closer view on protein interaction networks.
Claudio Iacobucci, Michael Götze, Andrea Sinz. Curr Opin Biotechnol 2020
34
50

Comparative cross-linking and mass spectrometry of an intact F-type ATPase suggest a role for phosphorylation.
Carla Schmidt, Min Zhou, Hazel Marriott, Nina Morgner, Argyris Politis, Carol V Robinson. Nat Commun 2013
105
50

Stitching the synapse: Cross-linking mass spectrometry into resolving synaptic protein interactions.
M A Gonzalez-Lozano, F Koopmans, P F Sullivan, J Protze, G Krause, M Verhage, K W Li, F Liu, A B Smit. Sci Adv 2020
33
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.