A citation-based method for searching scientific literature

Phaedra R Theodoridis, Michael Bokros, Dane Marijan, Nathan C Balukoff, Dazhi Wang, Chloe C Kirk, Taylor D Budine, Harris D Goldsmith, Miling Wang, Timothy E Audas, Stephen Lee. Proc Natl Acad Sci U S A 2021
Times Cited: 12







List of co-cited articles
163 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Adaptation to Stressors by Systemic Protein Amyloidogenesis.
Timothy E Audas, Danielle E Audas, Mathieu D Jacob, J J David Ho, Mireille Khacho, Miling Wang, J Kishan Perera, Caroline Gardiner, Clay A Bennett, Trajen Head,[...]. Dev Cell 2016
98
66

Nuclear stress bodies.
Giuseppe Biamonti, Claire Vourc'h. Cold Spring Harb Perspect Biol 2010
154
50

Germline P granules are liquid droplets that localize by controlled dissolution/condensation.
Clifford P Brangwynne, Christian R Eckmann, David S Courson, Agata Rybarska, Carsten Hoege, Jöbin Gharakhani, Frank Jülicher, Anthony A Hyman. Science 2009
50

Immobilization of proteins in the nucleolus by ribosomal intergenic spacer noncoding RNA.
Timothy E Audas, Mathieu D Jacob, Stephen Lee. Mol Cell 2012
172
41


A Molecular Grammar Governing the Driving Forces for Phase Separation of Prion-like RNA Binding Proteins.
Jie Wang, Jeong-Mo Choi, Alex S Holehouse, Hyun O Lee, Xiaojie Zhang, Marcus Jahnel, Shovamayee Maharana, Régis Lemaitre, Andrei Pozniakovsky, David Drechsel,[...]. Cell 2018
716
33


LncRNA-dependent nuclear stress bodies promote intron retention through SR protein phosphorylation.
Kensuke Ninomiya, Shungo Adachi, Tohru Natsume, Junichi Iwakiri, Goro Terai, Kiyoshi Asai, Tetsuro Hirose. EMBO J 2020
58
33

Coexisting Liquid Phases Underlie Nucleolar Subcompartments.
Marina Feric, Nilesh Vaidya, Tyler S Harmon, Diana M Mitrea, Lian Zhu, Tiffany M Richardson, Richard W Kriwacki, Rohit V Pappu, Clifford P Brangwynne. Cell 2016
860
33

Liquid phase condensation in cell physiology and disease.
Yongdae Shin, Clifford P Brangwynne. Science 2017
33

Quantitative analysis of multilayer organization of proteins and RNA in nuclear speckles at super resolution.
Jingyi Fei, Mahdieh Jadaliha, Tyler S Harmon, Isaac T S Li, Boyang Hua, Qinyu Hao, Alex S Holehouse, Matthew Reyer, Qinyu Sun, Susan M Freier,[...]. J Cell Sci 2017
129
33

Paraspeckles: a novel nuclear domain.
Archa H Fox, Yun Wah Lam, Anthony K L Leung, Carol E Lyon, Jens Andersen, Matthias Mann, Angus I Lamond. Curr Biol 2002
377
33

Paraspeckles are constructed as block copolymer micelles.
Tomohiro Yamazaki, Tetsuya Yamamoto, Hyura Yoshino, Sylvie Souquere, Shinichi Nakagawa, Gerard Pierron, Tetsuro Hirose. EMBO J 2021
21
33

Nascent Pre-rRNA Sorting via Phase Separation Drives the Assembly of Dense Fibrillar Components in the Human Nucleolus.
Run-Wen Yao, Guang Xu, Ying Wang, Lin Shan, Peng-Fei Luan, Yang Wang, Man Wu, Liang-Zhong Yang, Yu-Hang Xing, Li Yang,[...]. Mol Cell 2019
95
33

Functional Domains of NEAT1 Architectural lncRNA Induce Paraspeckle Assembly through Phase Separation.
Tomohiro Yamazaki, Sylvie Souquere, Takeshi Chujo, Simon Kobelke, Yee Seng Chong, Archa H Fox, Charles S Bond, Shinichi Nakagawa, Gerard Pierron, Tetsuro Hirose. Mol Cell 2018
276
33

Nuclear speckles.
David L Spector, Angus I Lamond. Cold Spring Harb Perspect Biol 2011
496
33

Stress-Induced Low Complexity RNA Activates Physiological Amyloidogenesis.
Miling Wang, Xianzun Tao, Mathieu D Jacob, Clayton A Bennett, J J David Ho, Mark L Gonzalgo, Timothy E Audas, Stephen Lee. Cell Rep 2018
47
33

A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.
Avinash Patel, Hyun O Lee, Louise Jawerth, Shovamayee Maharana, Marcus Jahnel, Marco Y Hein, Stoyno Stoynov, Julia Mahamid, Shambaditya Saha, Titus M Franzmann,[...]. Cell 2015
33

Biomolecular condensates: organizers of cellular biochemistry.
Salman F Banani, Hyun O Lee, Anthony A Hyman, Michael K Rosen. Nat Rev Mol Cell Biol 2017
33

A gel phase promotes condensation of liquid P granules in Caenorhabditis elegans embryos.
Andrea Putnam, Madeline Cassani, Jarrett Smith, Geraldine Seydoux. Nat Struct Mol Biol 2019
108
33

Amyloid-like Self-Assembly of a Cellular Compartment.
Elvan Boke, Martine Ruer, Martin Wühr, Margaret Coughlin, Regis Lemaitre, Steven P Gygi, Simon Alberti, David Drechsel, Anthony A Hyman, Timothy J Mitchison. Cell 2016
203
33

The nucleolus as a multiphase liquid condensate.
Denis L J Lafontaine, Joshua A Riback, Rümeyza Bascetin, Clifford P Brangwynne. Nat Rev Mol Cell Biol 2021
173
33


MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles.
Yasnory T F Sasaki, Takashi Ideue, Miho Sano, Toutai Mituyama, Tetsuro Hirose. Proc Natl Acad Sci U S A 2009
432
25


mRNA structure determines specificity of a polyQ-driven phase separation.
Erin M Langdon, Yupeng Qiu, Amirhossein Ghanbari Niaki, Grace A McLaughlin, Chase A Weidmann, Therese M Gerbich, Jean A Smith, John M Crutchley, Christina M Termini, Kevin M Weeks,[...]. Science 2018
273
25

SON and SRRM2 are essential for nuclear speckle formation.
İbrahim Avşar Ilik, Michal Malszycki, Anna Katharina Lübke, Claudia Schade, David Meierhofer, Tuğçe Aktaş. Elife 2020
42
25

Human satellite-III non-coding RNAs modulate heat-shock-induced transcriptional repression.
Anshika Goenka, Sonali Sengupta, Rajesh Pandey, Rashmi Parihar, Girish Chandra Mohanta, Mitali Mukerji, Subramaniam Ganesh. J Cell Sci 2016
34
25

Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels.
Masato Kato, Tina W Han, Shanhai Xie, Kevin Shi, Xinlin Du, Leeju C Wu, Hamid Mirzaei, Elizabeth J Goldsmith, Jamie Longgood, Jimin Pei,[...]. Cell 2012
25

Structural, super-resolution microscopy analysis of paraspeckle nuclear body organization.
Jason A West, Mari Mito, Satoshi Kurosaka, Toru Takumi, Chiharu Tanegashima, Takeshi Chujo, Kaori Yanaka, Robert E Kingston, Tetsuro Hirose, Charles Bond,[...]. J Cell Biol 2016
173
25

Paraspeckles: Where Long Noncoding RNA Meets Phase Separation.
Archa H Fox, Shinichi Nakagawa, Tetsuro Hirose, Charles S Bond. Trends Biochem Sci 2018
209
25

Evaluating phase separation in live cells: diagnosis, caveats, and functional consequences.
David T McSwiggen, Mustafa Mir, Xavier Darzacq, Robert Tjian. Genes Dev 2019
263
25

Highly ordered spatial organization of the structural long noncoding NEAT1 RNAs within paraspeckle nuclear bodies.
Sylvie Souquere, Guillaume Beauclair, Francis Harper, Archa Fox, Gérard Pierron. Mol Biol Cell 2010
146
25

PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.
Alex K Lancaster, Andrew Nutter-Upham, Susan Lindquist, Oliver D King. Bioinformatics 2014
223
25

RNA buffers the phase separation behavior of prion-like RNA binding proteins.
Shovamayee Maharana, Jie Wang, Dimitrios K Papadopoulos, Doris Richter, Andrey Pozniakovsky, Ina Poser, Marc Bickle, Sandra Rizk, Jordina Guillén-Boixet, Titus M Franzmann,[...]. Science 2018
503
25

RNA phase transitions in repeat expansion disorders.
Ankur Jain, Ronald D Vale. Nature 2017
399
25

The lncRNA Neat1 is required for corpus luteum formation and the establishment of pregnancy in a subpopulation of mice.
Shinichi Nakagawa, Masayuki Shimada, Kaori Yanaka, Mari Mito, Takashi Arai, Eiki Takahashi, Youko Fujita, Toshihiko Fujimori, Laura Standaert, Jean-Christophe Marine,[...]. Development 2014
171
25

Competing Protein-RNA Interaction Networks Control Multiphase Intracellular Organization.
David W Sanders, Nancy Kedersha, Daniel S W Lee, Amy R Strom, Victoria Drake, Joshua A Riback, Dan Bracha, Jorine M Eeftens, Allana Iwanicki, Alicia Wang,[...]. Cell 2020
269
25


Stress-specific aggregation of proteins in the amyloid bodies.
Dane Marijan, Ronnie Tse, Keenan Elliott, Sahil Chandhok, Monica Luo, Emma Lacroix, Timothy E Audas. FEBS Lett 2019
11
27

Phase separation by low complexity domains promotes stress granule assembly and drives pathological fibrillization.
Amandine Molliex, Jamshid Temirov, Jihun Lee, Maura Coughlin, Anderson P Kanagaraj, Hong Joo Kim, Tanja Mittag, J Paul Taylor. Cell 2015
25

An aberrant phase transition of stress granules triggered by misfolded protein and prevented by chaperone function.
Daniel Mateju, Titus M Franzmann, Avinash Patel, Andrii Kopach, Edgar E Boczek, Shovamayee Maharana, Hyun O Lee, Serena Carra, Anthony A Hyman, Simon Alberti. EMBO J 2017
253
25

Promiscuous interactions and protein disaggregases determine the material state of stress-inducible RNP granules.
Sonja Kroschwald, Shovamayee Maharana, Daniel Mateju, Liliana Malinovska, Elisabeth Nüske, Ina Poser, Doris Richter, Simon Alberti. Elife 2015
331
25

The nucleolus functions as a phase-separated protein quality control compartment.
F Frottin, F Schueder, S Tiwary, R Gupta, R Körner, T Schlichthaerle, J Cox, R Jungmann, F U Hartl, M S Hipp. Science 2019
205
25

Organization and Function of Non-dynamic Biomolecular Condensates.
Jeffrey B Woodruff, Anthony A Hyman, Elvan Boke. Trends Biochem Sci 2018
103
25

Phase transitions in the assembly of multivalent signalling proteins.
Pilong Li, Sudeep Banjade, Hui-Chun Cheng, Soyeon Kim, Baoyu Chen, Liang Guo, Marc Llaguno, Javoris V Hollingsworth, David S King, Salman F Banani,[...]. Nature 2012
25

The Centrosome Is a Selective Condensate that Nucleates Microtubules by Concentrating Tubulin.
Jeffrey B Woodruff, Beatriz Ferreira Gomes, Per O Widlund, Julia Mahamid, Alf Honigmann, Anthony A Hyman. Cell 2017
317
25

The Stress Granule Transcriptome Reveals Principles of mRNA Accumulation in Stress Granules.
Anthony Khong, Tyler Matheny, Saumya Jain, Sarah F Mitchell, Joshua R Wheeler, Roy Parker. Mol Cell 2017
327
25

ATPase-Modulated Stress Granules Contain a Diverse Proteome and Substructure.
Saumya Jain, Joshua R Wheeler, Robert W Walters, Anurag Agrawal, Anthony Barsic, Roy Parker. Cell 2016
758
25

P-Body Purification Reveals the Condensation of Repressed mRNA Regulons.
Arnaud Hubstenberger, Maïté Courel, Marianne Bénard, Sylvie Souquere, Michèle Ernoult-Lange, Racha Chouaib, Zhou Yi, Jean-Baptiste Morlot, Annie Munier, Magali Fradet,[...]. Mol Cell 2017
341
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.