A citation-based method for searching scientific literature

Yang Mei, Zhong Deng, Olga Vladimirova, Nitish Gulve, F Brad Johnson, William C Drosopoulos, Carl L Schildkraut, Paul M Lieberman. Sci Rep 2021
Times Cited: 2







List of co-cited articles
3 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



RAD51-dependent recruitment of TERRA lncRNA to telomeres through R-loops.
Marianna Feretzaki, Michaela Pospisilova, Rita Valador Fernandes, Thomas Lunardi, Lumir Krejci, Joachim Lingner. Nature 2020
25
100

Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends.
Claus M Azzalin, Patrick Reichenbach, Lela Khoriauli, Elena Giulotto, Joachim Lingner. Science 2007
809
100

IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding.
Bálint Mészáros, Gábor Erdos, Zsuzsanna Dosztányi. Nucleic Acids Res 2018
339
50


Immobilization of proteins in the nucleolus by ribosomal intergenic spacer noncoding RNA.
Timothy E Audas, Mathieu D Jacob, Stephen Lee. Mol Cell 2012
147
50


Structure and dynamics of hnRNP-labelled nuclear bodies induced by stress treatments.
I Chiodi, M Biggiogera, M Denegri, M Corioni, F Weighardt, F Cobianchi, S Riva, G Biamonti. J Cell Sci 2000
56
50


SWI/SNF chromatin-remodeling complexes function in noncoding RNA-dependent assembly of nuclear bodies.
Tetsuya Kawaguchi, Akie Tanigawa, Takao Naganuma, Yasuyuki Ohkawa, Sylvie Souquere, Gerard Pierron, Tetsuro Hirose. Proc Natl Acad Sci U S A 2015
79
50

Transcription of Satellite III non-coding RNAs is a general stress response in human cells.
Rut Valgardsdottir, Ilaria Chiodi, Manuela Giordano, Antonio Rossi, Silvia Bazzini, Claudia Ghigna, Silvano Riva, Giuseppe Biamonti. Nucleic Acids Res 2008
129
50

Identification of a common subnuclear localization signal.
Karim Mekhail, Luis Rivero-Lopez, Ahmad Al-Masri, Caroline Brandon, Mireille Khacho, Stephen Lee. Mol Biol Cell 2007
30
50

Colon cancer associated transcript-1: a novel RNA expressed in malignant and pre-malignant human tissues.
Aviram Nissan, Alexander Stojadinovic, Stella Mitrani-Rosenbaum, David Halle, Ronit Grinbaum, Marina Roistacher, Andrea Bochem, Baris Emre Dayanc, Gerd Ritter, Ismail Gomceli,[...]. Int J Cancer 2012
195
50

MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles.
Yasnory T F Sasaki, Takashi Ideue, Miho Sano, Toutai Mituyama, Tetsuro Hirose. Proc Natl Acad Sci U S A 2009
382
50

Conservation of a triple-helix-forming RNA stability element in noncoding and genomic RNAs of diverse viruses.
Kazimierz T Tycowski, Mei-Di Shu, Sumit Borah, Mary Shi, Joan A Steitz. Cell Rep 2012
65
50

Myriad Triple-Helix-Forming Structures in the Transposable Element RNAs of Plants and Fungi.
Kazimierz T Tycowski, Mei-Di Shu, Joan A Steitz. Cell Rep 2016
16
50


An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles.
Christine M Clemson, John N Hutchinson, Sergio A Sara, Alexander W Ensminger, Archa H Fox, Andrew Chess, Jeanne B Lawrence. Mol Cell 2009
858
50

Foci of trinucleotide repeat transcripts in nuclei of myotonic dystrophy cells and tissues.
K L Taneja, M McCurrach, M Schalling, D Housman, R H Singer. J Cell Biol 1995
447
50

Xist-deficient mice are defective in dosage compensation but not spermatogenesis.
Y Marahrens, B Panning, J Dausman, W Strauss, R Jaenisch. Genes Dev 1997
536
50

Alternative 3'-end processing of long noncoding RNA initiates construction of nuclear paraspeckles.
Takao Naganuma, Shinichi Nakagawa, Akie Tanigawa, Yasnory F Sasaki, Naoki Goshima, Tetsuro Hirose. EMBO J 2012
213
50

Progress toward understanding chromosome silencing by Xist RNA.
Neil Brockdorff, Joseph S Bowness, Guifeng Wei. Genes Dev 2020
17
50

A cluster of noncoding RNAs activates the ESR1 locus during breast cancer adaptation.
Saori Tomita, Mohamed Osama Ali Abdalla, Saori Fujiwara, Haruka Matsumori, Kazumitsu Maehara, Yasuyuki Ohkawa, Hirotaka Iwase, Noriko Saitoh, Mitsuyoshi Nakao. Nat Commun 2015
37
50

An in vitro technique to identify the RNA binding-site sequences for RNA-binding proteins.
SunKyung Choi, Chungoo Park, Kyoon Eon Kim, Kee K Kim. Biotechniques 2017
5
50

CRISPR-Cas13d Induces Efficient mRNA Knockdown in Animal Embryos.
Gopal Kushawah, Luis Hernandez-Huertas, Joaquin Abugattas-Nuñez Del Prado, Juan R Martinez-Morales, Michelle L DeVore, Huzaifa Hassan, Ismael Moreno-Sanchez, Laura Tomas-Gallardo, Alejandro Diaz-Moscoso, Dahiana E Monges,[...]. Dev Cell 2020
18
50


A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus.
A Rasim Barutcu, Philipp G Maass, Jordan P Lewandowski, Catherine L Weiner, John L Rinn. Nat Commun 2018
50
50

Stress-induced transcription of satellite III repeats.
Caroline Jolly, Alexandra Metz, Jérôme Govin, Marc Vigneron, Bryan M Turner, Saadi Khochbin, Claire Vourc'h. J Cell Biol 2004
194
50


Formation of triple-helical structures by the 3'-end sequences of MALAT1 and MENβ noncoding RNAs.
Jessica A Brown, Max L Valenstein, Therese A Yario, Kazimierz T Tycowski, Joan A Steitz. Proc Natl Acad Sci U S A 2012
160
50

p53 Activates the Long Noncoding RNA Pvt1b to Inhibit Myc and Suppress Tumorigenesis.
Christiane E Olivero, Elena Martínez-Terroba, Joshua Zimmer, Clara Liao, Ephrath Tesfaye, Nima Hooshdaran, Jeremy A Schofield, Jordan Bendor, Dorthy Fang, Matthew D Simon,[...]. Mol Cell 2020
29
50

Orphan nuclear bodies.
Maria Carmo-Fonseca, Maria T Berciano, Miguel Lafarga. Cold Spring Harb Perspect Biol 2010
16
50


Female mice lacking Xist RNA show partial dosage compensation and survive to term.
Lin Yang, James E Kirby, Hongjae Sunwoo, Jeannie T Lee. Genes Dev 2016
28
50


Demethylation of repetitive DNA sequences in neuroblastoma.
D Thoraval, J Asakawa, K Wimmer, R Kuick, B Lamb, B Richardson, P Ambros, T Glover, S Hanash. Genes Chromosomes Cancer 1996
38
50

A Molecular Grammar Governing the Driving Forces for Phase Separation of Prion-like RNA Binding Proteins.
Jie Wang, Jeong-Mo Choi, Alex S Holehouse, Hyun O Lee, Xiaojie Zhang, Marcus Jahnel, Shovamayee Maharana, Régis Lemaitre, Andrei Pozniakovsky, David Drechsel,[...]. Cell 2018
453
50

p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity.
Carmen Adriaens, Laura Standaert, Jasmine Barra, Mathilde Latil, Annelien Verfaillie, Peter Kalev, Bram Boeckx, Paul W G Wijnhoven, Enrico Radaelli, William Vermi,[...]. Nat Med 2016
236
50

Long Noncoding RNAs: Molecular Modalities to Organismal Functions.
John L Rinn, Howard Y Chang. Annu Rev Biochem 2020
23
50

Inhibition of nucleolar reformation after microinjection of antibodies to RNA polymerase I into mitotic cells.
R Benavente, K M Rose, G Reimer, B Hügle-Dörr, U Scheer. J Cell Biol 1987
107
50

Demethylated HSATII DNA and HSATII RNA Foci Sequester PRC1 and MeCP2 into Cancer-Specific Nuclear Bodies.
Lisa L Hall, Meg Byron, Dawn M Carone, Troy W Whitfield, Gayle P Pouliot, Andrew Fischer, Peter Jones, Jeanne B Lawrence. Cell Rep 2017
42
50

mRNA structure determines specificity of a polyQ-driven phase separation.
Erin M Langdon, Yupeng Qiu, Amirhossein Ghanbari Niaki, Grace A McLaughlin, Chase A Weidmann, Therese M Gerbich, Jean A Smith, John M Crutchley, Christina M Termini, Kevin M Weeks,[...]. Science 2018
199
50

Stochastic and reversible aggregation of mRNA with expanded CUG-triplet repeats.
Emmanuelle Querido, Franck Gallardo, Mélissa Beaudoin, Catherine Ménard, Pascal Chartrand. J Cell Sci 2011
45
50

SON and SRRM2 are essential for nuclear speckle formation.
İbrahim Avşar Ilik, Michal Malszycki, Anna Katharina Lübke, Claudia Schade, David Meierhofer, Tuğçe Aktaş. Elife 2020
11
50

Muscleblind localizes to nuclear foci of aberrant RNA in myotonic dystrophy types 1 and 2.
A Mankodi, C R Urbinati, Q P Yuan, R T Moxley, V Sansone, M Krym, D Henderson, M Schalling, M S Swanson, C A Thornton. Hum Mol Genet 2001
307
50

Human satellite-III non-coding RNAs modulate heat-shock-induced transcriptional repression.
Anshika Goenka, Sonali Sengupta, Rajesh Pandey, Rashmi Parihar, Girish Chandra Mohanta, Mitali Mukerji, Subramaniam Ganesh. J Cell Sci 2016
21
50


A novel long non-coding RNA from NBL2 pericentromeric macrosatellite forms a perinucleolar aggregate structure in colon cancer.
Gabrijela Dumbovic, Josep Biayna, Jordi Banús, Johanna Samuelsson, Anna Roth, Sven Diederichs, Sergio Alonso, Marcus Buschbeck, Manuel Perucho, Sonia-V Forcales. Nucleic Acids Res 2018
13
50

Nuclear stress bodies.
Giuseppe Biamonti, Claire Vourc'h. Cold Spring Harb Perspect Biol 2010
130
50

PML nuclear bodies.
Valérie Lallemand-Breitenbach, Hugues de Thé. Cold Spring Harb Perspect Biol 2010
352
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.