A citation-based method for searching scientific literature

Flávia G Ghiraldini, Dan Filipescu, Emily Bernstein. Nat Rev Cancer 2021
Times Cited: 2







List of co-cited articles
4 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Recognition of histone acetylation by the GAS41 YEATS domain promotes H2A.Z deposition in non-small cell lung cancer.
Chih-Chao Hsu, Jiejun Shi, Chao Yuan, Dan Zhao, Shiming Jiang, Jie Lyu, Xiaolu Wang, Haitao Li, Hong Wen, Wei Li,[...]. Genes Dev 2018
31
100

The expanding landscape of 'oncohistone' mutations in human cancers.
Benjamin A Nacev, Lijuan Feng, John D Bagert, Agata E Lemiesz, JianJiong Gao, Alexey A Soshnev, Ritika Kundra, Nikolaus Schultz, Tom W Muir, C David Allis. Nature 2019
104
100

The histone H3.3K27M mutation in pediatric glioma reprograms H3K27 methylation and gene expression.
Kui-Ming Chan, Dong Fang, Haiyun Gan, Rintaro Hashizume, Chuanhe Yu, Mark Schroeder, Nalin Gupta, Sabine Mueller, C David James, Robert Jenkins,[...]. Genes Dev 2013
393
100

Reduced H3K27me3 and DNA hypomethylation are major drivers of gene expression in K27M mutant pediatric high-grade gliomas.
Sebastian Bender, Yujie Tang, Anders M Lindroth, Volker Hovestadt, David T W Jones, Marcel Kool, Marc Zapatka, Paul A Northcott, Dominik Sturm, Wei Wang,[...]. Cancer Cell 2013
387
100

NUP98-NSD1 links H3K36 methylation to Hox-A gene activation and leukaemogenesis.
Gang G Wang, Ling Cai, Martina P Pasillas, Mark P Kamps. Nat Cell Biol 2007
257
50

The von Hippel-Lindau tumor suppressor protein regulates gene expression and tumor growth through histone demethylase JARID1C.
X Niu, T Zhang, L Liao, L Zhou, D J Lindner, M Zhou, B Rini, Q Yan, H Yang. Oncogene 2012
98
50

Proteolysis targeting chimeras (PROTACs) for epigenetics research.
Anja Vogelmann, Dina Robaa, Wolfgang Sippl, Manfred Jung. Curr Opin Chem Biol 2020
19
50

Genetic inactivation of the polycomb repressive complex 2 in T cell acute lymphoblastic leukemia.
Panagiotis Ntziachristos, Aristotelis Tsirigos, Pieter Van Vlierberghe, Jelena Nedjic, Thomas Trimarchi, Maria Sol Flaherty, Dolors Ferres-Marco, Vanina da Ros, Zuojian Tang, Jasmin Siegle,[...]. Nat Med 2012
324
50

Histone benzoylation serves as an epigenetic mark for DPF and YEATS family proteins.
Xiangle Ren, Yang Zhou, Zhaoyu Xue, Ning Hao, Yuanyuan Li, Xiaohuan Guo, Daliang Wang, Xiaobing Shi, Haitao Li. Nucleic Acids Res 2021
1
100

Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF.
Yali Dou, Thomas A Milne, Alan J Tackett, Edwin R Smith, Aya Fukuda, Joanna Wysocka, C David Allis, Brian T Chait, Jay L Hess, Robert G Roeder. Cell 2005
475
50

Histone isoforms and the oncohistone code.
Andrew Flaus, Jessica A Downs, Tom Owen-Hughes. Curr Opin Genet Dev 2021
2
50

KMT2D Deficiency Impairs Super-Enhancers to Confer a Glycolytic Vulnerability in Lung Cancer.
Hunain Alam, Ming Tang, Mayinuer Maitituoheti, Shilpa S Dhar, Manish Kumar, Chae Young Han, Chandrashekar R Ambati, Samir B Amin, Bingnan Gu, Tsai-Yu Chen,[...]. Cancer Cell 2020
24
50

Coordinated Dialogue between UHRF1 and DNMT1 to Ensure Faithful Inheritance of Methylated DNA Patterns.
Christian Bronner, Mahmoud Alhosin, Ali Hamiche, Marc Mousli. Genes (Basel) 2019
21
50

The impact of cellular metabolism on chromatin dynamics and epigenetics.
Michael A Reid, Ziwei Dai, Jason W Locasale. Nat Cell Biol 2017
179
50

Effects of H3.3G34V mutation on genomic H3K36 and H3K27 methylation patterns in isogenic pediatric glioma cells.
Tina Yi-Ting Huang, Andrea Piunti, Jin Qi, Marc Morgan, Elizabeth Bartom, Ali Shilatifard, Amanda M Saratsis. Acta Neuropathol Commun 2020
4
50

Metabolism, Activity, and Targeting of D- and L-2-Hydroxyglutarates.
Dan Ye, Kun-Liang Guan, Yue Xiong. Trends Cancer 2018
78
50


Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine.
Shinsuke Ito, Li Shen, Qing Dai, Susan C Wu, Leonard B Collins, James A Swenberg, Chuan He, Yi Zhang. Science 2011
50

Multiple interactions recruit MLL1 and MLL1 fusion proteins to the HOXA9 locus in leukemogenesis.
Thomas A Milne, Jaehoon Kim, Gang G Wang, Sonja C Stadler, Venkatesha Basrur, Sarah J Whitcomb, Zhanxin Wang, Alexander J Ruthenburg, Kojo S J Elenitoba-Johnson, Robert G Roeder,[...]. Mol Cell 2010
145
50

Genetic and epigenetic determinants of diffuse large B-cell lymphoma.
Tanner J Bakhshi, Philippe T Georgel. Blood Cancer J 2020
3
50

Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.
Yu-Fei He, Bin-Zhong Li, Zheng Li, Peng Liu, Yang Wang, Qingyu Tang, Jianping Ding, Yingying Jia, Zhangcheng Chen, Lin Li,[...]. Science 2011
50

Mechanistic insights into chromatin targeting by leukemic NUP98-PHF23 fusion.
Yi Zhang, Yiran Guo, Sheryl M Gough, Jinyong Zhang, Kendra R Vann, Kuai Li, Ling Cai, Xiaobing Shi, Peter D Aplan, Gang Greg Wang,[...]. Nat Commun 2020
2
50

Loss of EZH2 Reprograms BCAA Metabolism to Drive Leukemic Transformation.
Zhimin Gu, Yuxuan Liu, Feng Cai, McKenzie Patrick, Jakub Zmajkovic, Hui Cao, Yuannyu Zhang, Alpaslan Tasdogan, Mingyi Chen, Le Qi,[...]. Cancer Discov 2019
42
50

The epigenomics of sarcoma.
Benjamin A Nacev, Kevin B Jones, Andrew M Intlekofer, Jamie S E Yu, C David Allis, William D Tap, Marc Ladanyi, Torsten O Nielsen. Nat Rev Cancer 2020
21
50

Structure of nucleosome-bound DNA methyltransferases DNMT3A and DNMT3B.
Ting-Hai Xu, Minmin Liu, X Edward Zhou, Gangning Liang, Gongpu Zhao, H Eric Xu, Karsten Melcher, Peter A Jones. Nature 2020
11
50

Mammalian ALKBH1 serves as an N6-mA demethylase of unpairing DNA.
Min Zhang, Shumin Yang, Raman Nelakanti, Wentao Zhao, Gaochao Liu, Zheng Li, Xiaohui Liu, Tao Wu, Andrew Xiao, Haitao Li. Cell Res 2020
18
50

Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation.
Maria E Figueroa, Omar Abdel-Wahab, Chao Lu, Patrick S Ward, Jay Patel, Alan Shih, Yushan Li, Neha Bhagwat, Aparna Vasanthakumar, Hugo F Fernandez,[...]. Cancer Cell 2010
50

Point mutation E1099K in MMSET/NSD2 enhances its methyltranferase activity and leads to altered global chromatin methylation in lymphoid malignancies.
J A Oyer, X Huang, Y Zheng, J Shim, T Ezponda, Z Carpenter, M Allegretta, C I Okot-Kotber, J P Patel, A Melnick,[...]. Leukemia 2014
78
50

Quantitative LC-MS Provides No Evidence for m6 dA or m4 dC in the Genome of Mouse Embryonic Stem Cells and Tissues.
Sarah Schiffers, Charlotte Ebert, René Rahimoff, Olesea Kosmatchev, Jessica Steinbacher, Alexandra-Viola Bohne, Fabio Spada, Stylianos Michalakis, Jörg Nickelsen, Markus Müller,[...]. Angew Chem Int Ed Engl 2017
53
50

Molecular Coupling of Histone Crotonylation and Active Transcription by AF9 YEATS Domain.
Yuanyuan Li, Benjamin R Sabari, Tatyana Panchenko, Hong Wen, Dan Zhao, Haipeng Guan, Liling Wan, He Huang, Zhanyun Tang, Yingming Zhao,[...]. Mol Cell 2016
146
50

Defining UHRF1 Domains that Support Maintenance of Human Colon Cancer DNA Methylation and Oncogenic Properties.
Xiangqian Kong, Jie Chen, Wenbing Xie, Stephen M Brown, Yi Cai, Kaichun Wu, Daiming Fan, Yongzhan Nie, Srinivasan Yegnasubramanian, Rochelle L Tiedemann,[...]. Cancer Cell 2019
33
50

Nonhistone Lysine Methylation in the Regulation of Cancer Pathways.
Scott M Carlson, Or Gozani. Cold Spring Harb Perspect Med 2016
50
50

The Polycomb complex PRC2 and its mark in life.
Raphaël Margueron, Danny Reinberg. Nature 2011
50

Cancer epigenetics: from mechanism to therapy.
Mark A Dawson, Tony Kouzarides. Cell 2012
50

A higher-order configuration of the heterodimeric DOT1L-AF10 coiled-coil domains potentiates their leukemogenenic activity.
Xiaosheng Song, Liuliu Yang, Mingzhu Wang, Yue Gu, Buqing Ye, Zusen Fan, Rui-Ming Xu, Na Yang. Proc Natl Acad Sci U S A 2019
8
50

Epigenetic silencing of TH1-type chemokines shapes tumour immunity and immunotherapy.
Dongjun Peng, Ilona Kryczek, Nisha Nagarsheth, Lili Zhao, Shuang Wei, Weimin Wang, Yuqing Sun, Ende Zhao, Linda Vatan, Wojciech Szeliga,[...]. Nature 2015
502
50


PRC2 is recurrently inactivated through EED or SUZ12 loss in malignant peripheral nerve sheath tumors.
William Lee, Sewit Teckie, Thomas Wiesner, Leili Ran, Carlos N Prieto Granada, Mingyan Lin, Sinan Zhu, Zhen Cao, Yupu Liang, Andrea Sboner,[...]. Nat Genet 2014
273
50

Propagation of trimethylated H3K27 regulated by polycomb protein EED is required for embryogenesis, hematopoietic maintenance, and tumor suppression.
Takeshi Ueda, Yuichiro Nakata, Akiko Nagamachi, Norimasa Yamasaki, Akinori Kanai, Yasuyuki Sera, Masato Sasaki, Hirotaka Matsui, Zen-Ichiro Honda, Hideaki Oda,[...]. Proc Natl Acad Sci U S A 2016
14
50

NUP98/JARID1A is a novel recurrent abnormality in pediatric acute megakaryoblastic leukemia with a distinct HOX gene expression pattern.
J D E de Rooij, I H I M Hollink, S T C J M Arentsen-Peters, J F van Galen, H Berna Beverloo, A Baruchel, J Trka, D Reinhardt, E Sonneveld, M Zimmermann,[...]. Leukemia 2013
77
50

EZH2 oncogenic mutations drive epigenetic, transcriptional, and structural changes within chromatin domains.
Maria C Donaldson-Collier, Stephanie Sungalee, Marie Zufferey, Daniele Tavernari, Natalya Katanayeva, Elena Battistello, Marco Mina, Kyle M Douglass, Timo Rey, Franck Raynaud,[...]. Nat Genet 2019
41
50

Unique and Shared Epigenetic Programs of the CREBBP and EP300 Acetyltransferases in Germinal Center B Cells Reveal Targetable Dependencies in Lymphoma.
Stefanie N Meyer, Claudio Scuoppo, Sofija Vlasevska, Elodie Bal, Antony B Holmes, Mara Holloman, Laura Garcia-Ibanez, Sarah Nataraj, Romain Duval, Thomas Vantrimpont,[...]. Immunity 2019
30
50

Conserved crosstalk between histone deacetylation and H3K79 methylation generates DOT1L-dose dependency in HDAC1-deficient thymic lymphoma.
Hanneke Vlaming, Chelsea M McLean, Tessy Korthout, Mir Farshid Alemdehy, Sjoerd Hendriks, Cesare Lancini, Sander Palit, Sjoerd Klarenbeek, Eliza Mari Kwesi-Maliepaard, Thom M Molenaar,[...]. EMBO J 2019
15
50

Translating the histone code.
T Jenuwein, C D Allis. Science 2001
50

Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains.
Ann Boija, Isaac A Klein, Benjamin R Sabari, Alessandra Dall'Agnese, Eliot L Coffey, Alicia V Zamudio, Charles H Li, Krishna Shrinivas, John C Manteiga, Nancy M Hannett,[...]. Cell 2018
408
50

Histone H3K36 mutations promote sarcomagenesis through altered histone methylation landscape.
Chao Lu, Siddhant U Jain, Dominik Hoelper, Denise Bechet, Rosalynn C Molden, Leili Ran, Devan Murphy, Sriram Venneti, Meera Hameed, Bruce R Pawel,[...]. Science 2016
185
50

SnapShot: histone modifications.
He Huang, Benjamin R Sabari, Benjamin A Garcia, C David Allis, Yingming Zhao. Cell 2014
220
50

Structural basis of nucleic acid recognition and 6mA demethylation by human ALKBH1.
Li-Fei Tian, Yan-Ping Liu, Lianqi Chen, Qun Tang, Wei Wu, Wei Sun, Zhongzhou Chen, Xiao-Xue Yan. Cell Res 2020
10
50

m6A promotes R-loop formation to facilitate transcription termination.
Xin Yang, Qian-Lan Liu, Wei Xu, Yi-Chang Zhang, Ying Yang, Lin-Fang Ju, Jing Chen, Yu-Sheng Chen, Kuan Li, Jie Ren,[...]. Cell Res 2019
32
50

Bromodomain biology and drug discovery.
Nilesh Zaware, Ming-Ming Zhou. Nat Struct Mol Biol 2019
46
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.