A citation-based method for searching scientific literature

Matea Nikolac Perkovic, Alja Videtic Paska, Marcela Konjevod, Katarina Kouter, Dubravka Svob Strac, Gordana Nedic Erjavec, Nela Pivac. Biomolecules 2021
Times Cited: 6







List of co-cited articles
12 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


DNA methylation regulates associative reward learning.
Jeremy J Day, Daniel Childs, Mikael C Guzman-Karlsson, Mercy Kibe, Jerome Moulden, Esther Song, Absar Tahir, J David Sweatt. Nat Neurosci 2013
135
33



Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation.
Farzaneh Modarresi, Mohammad Ali Faghihi, Miguel A Lopez-Toledano, Roya Pedram Fatemi, Marco Magistri, Shaun P Brothers, Marcel P van der Brug, Claes Wahlestedt. Nat Biotechnol 2012
416
33


A Breakdown in Metabolic Reprogramming Causes Microglia Dysfunction in Alzheimer's Disease.
Sung Hoon Baik, Seokjo Kang, Woochan Lee, Hayoung Choi, Sunwoo Chung, Jong-Il Kim, Inhee Mook-Jung. Cell Metab 2019
119
33

Knockdown of BACE1-AS by siRNA improves memory and learning behaviors in Alzheimer's disease animal model.
Wenting Zhang, Hao Zhao, Qian Wu, Wenan Xu, Minwu Xia. Exp Ther Med 2018
22
33

An intronic ncRNA-dependent regulation of SORL1 expression affecting Aβ formation is upregulated in post-mortem Alzheimer's disease brain samples.
Eleonora Ciarlo, Sara Massone, Ilaria Penna, Mario Nizzari, Arianna Gigoni, Giorgio Dieci, Claudio Russo, Tullio Florio, Ranieri Cancedda, Aldo Pagano. Dis Model Mech 2013
102
33

The Long Non-Coding RNAs in Neurodegenerative Diseases: Novel Mechanisms of Pathogenesis.
Paola Riva, Antonia Ratti, Marco Venturin. Curr Alzheimer Res 2016
132
33

Alzheimer's disease.
C A Lane, J Hardy, J M Schott. Eur J Neurol 2018
641
33

Alzheimer's disease.
Philip Scheltens, Bart De Strooper, Miia Kivipelto, Henne Holstege, Gael Chételat, Charlotte E Teunissen, Jeffrey Cummings, Wiesje M van der Flier. Lancet 2021
78
33


Population Genomic- and Phylogenomic-Enabled Advances to Increase Insight Into Pathogen Biology and Epidemiology.
Remco Stam, Pierre Gladieux, Boris A Vinatzer, Erica M Goss, Neha Potnis, Thierry Candresse, Marin Talbot Brewer. Phytopathology 2021
1
100

Pinpointing Cell Identity in Time and Space.
Anca F Savulescu, Caron Jacobs, Yutaka Negishi, Laurianne Davignon, Musa M Mhlanga. Front Mol Biosci 2020
4
25

Integrating single-cell and spatial transcriptomics to elucidate intercellular tissue dynamics.
Sophia K Longo, Margaret G Guo, Andrew L Ji, Paul A Khavari. Nat Rev Genet 2021
12
16

NanoReviser: An Error-Correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm.
Luotong Wang, Li Qu, Longshu Yang, Yiying Wang, Huaiqiu Zhu. Front Genet 2020
9
16

New avenues for systematically inferring cell-cell communication: through single-cell transcriptomics data.
Xin Shao, Xiaoyan Lu, Jie Liao, Huajun Chen, Xiaohui Fan. Protein Cell 2020
13
16

Methylation analysis of Klebsiella pneumoniae from Portuguese hospitals.
Anton Spadar, João Perdigão, Jody Phelan, James Charleston, Ana Modesto, Rita Elias, Paola Florez de Sessions, Martin L Hibberd, Susana Campino, Aida Duarte,[...]. Sci Rep 2021
2
50

Direct RNA sequencing.
Fatih Ozsolak, Adam R Platt, Dan R Jones, Jeffrey G Reifenberger, Lauryn E Sass, Peter McInerney, John F Thompson, Jayson Bowers, Mirna Jarosz, Patrice M Milos. Nature 2009
268
16

Chromatin accessibility dynamics in a model of human forebrain development.
Alexandro E Trevino, Nasa Sinnott-Armstrong, Jimena Andersen, Se-Jin Yoon, Nina Huber, Jonathan K Pritchard, Howard Y Chang, William J Greenleaf, Sergiu P Pașca. Science 2020
50
16

Genome-wide CpG density and DNA methylation analysis method (MeDIP, RRBS, and WGBS) comparisons.
Daniel Beck, Millissia Ben Maamar, Michael K Skinner. Epigenetics 2021
1
100



RNA-sequencing from single nuclei.
Rashel V Grindberg, Joyclyn L Yee-Greenbaum, Michael J McConnell, Mark Novotny, Andy L O'Shaughnessy, Georgina M Lambert, Marcos J Araúzo-Bravo, Jun Lee, Max Fishman, Gillian E Robbins,[...]. Proc Natl Acad Sci U S A 2013
149
16

PBSIM2: a simulator for long-read sequencers with a novel generative model of quality scores.
Yukiteru Ono, Kiyoshi Asai, Michiaki Hamada. Bioinformatics 2021
5
20

Long-read cDNA sequencing identifies functional pseudogenes in the human transcriptome.
Robin-Lee Troskie, Yohaann Jafrani, Tim R Mercer, Adam D Ewing, Geoffrey J Faulkner, Seth W Cheetham. Genome Biol 2021
6
16


Illuminating the dark side of the human transcriptome with long read transcript sequencing.
Richard I Kuo, Yuanyuan Cheng, Runxuan Zhang, John W S Brown, Jacqueline Smith, Alan L Archibald, David W Burt. BMC Genomics 2020
14
16

Single-Cell Sequencing, an Advanced Technology in Lung Cancer Research.
Hao Wang, Die Meng, Haoyue Guo, Chenglong Sun, Peixin Chen, Minlin Jiang, Yi Xu, Jia Yu, Qiyu Fang, Jun Zhu,[...]. Onco Targets Ther 2021
2
50

Investigation of Burkholderia cepacia Complex Methylomes via Single-Molecule, Real-Time Sequencing and Mutant Analysis.
Olga Mannweiler, Marta Pinto-Carbó, Martina Lardi, Kirsty Agnoli, Leo Eberl. J Bacteriol 2021
2
50

Applying genomic and transcriptomic advances to mitochondrial medicine.
William L Macken, Jana Vandrovcova, Michael G Hanna, Robert D S Pitceathly. Nat Rev Neurol 2021
5
20

The Versatility of SMRT Sequencing.
Matthew S Hestand, Adam Ameur. Genes (Basel) 2019
5
20

Iterative Reanalysis of Hypertrophic Cardiomyopathy Exome Data Reveals Causative Pathogenic Mitochondrial DNA Variants.
Luis R Lopes, David Murphy, Enrico Bugiardini, Reem Salem, Joanna Jager, Marta Futema, Mohammed Majid Akhtar, Konstantinos Savvatis, Cathy Woodward, Alan M Pittman,[...]. Circ Genom Precis Med 2021
1
100

Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes.
José A Campoy, Hequan Sun, Manish Goel, Wen-Biao Jiao, Kat Folz-Donahue, Nan Wang, Manuel Rubio, Chang Liu, Christian Kukat, David Ruiz,[...]. Genome Biol 2020
9
16

A survey of human brain transcriptome diversity at the single cell level.
Spyros Darmanis, Steven A Sloan, Ye Zhang, Martin Enge, Christine Caneda, Lawrence M Shuer, Melanie G Hayden Gephart, Ben A Barres, Stephen R Quake. Proc Natl Acad Sci U S A 2015
571
16

Single-Cell Gene Network Analysis and Transcriptional Landscape of MYCN-Amplified Neuroblastoma Cell Lines.
Daniele Mercatelli, Nicola Balboni, Alessandro Palma, Emanuela Aleo, Pietro Paolo Sanna, Giovanni Perini, Federico Manuel Giorgi. Biomolecules 2021
3
33


Advances and challenges in epigenomic single-cell sequencing applications.
Martin Philpott, Adam P Cribbs, Tom Brown, Tom Brown, Udo Oppermann. Curr Opin Chem Biol 2020
9
16

A Comparison for Dimensionality Reduction Methods of Single-Cell RNA-seq Data.
Ruizhi Xiang, Wencan Wang, Lei Yang, Shiyuan Wang, Chaohan Xu, Xiaowen Chen. Front Genet 2021
2
50

Social epigenomics: are we at an impasse?
Amy L Non. Epigenomics 2021
3
33

Genome of the Single Human Chromosome 18 as a "Gold Standard" for Its Transcriptome.
Ekaterina Ilgisonis, Nikita Vavilov, Elena Ponomarenko, Andrey Lisitsa, Ekaterina Poverennaya, Victor Zgoda, Sergey Radko, Alexander Archakov. Front Genet 2021
4
25

Insights Gained from Single-Cell Analysis of Immune Cells in the Tumor Microenvironment.
Xianwen Ren, Lei Zhang, Yuanyuan Zhang, Ziyi Li, Nathan Siemers, Zemin Zhang. Annu Rev Immunol 2021
9
16

From Oncogenic Signaling Pathways to Single-Cell Sequencing of Immune Cells: Changing the Landscape of Cancer Immunotherapy.
Afshin Derakhshani, Zeinab Rostami, Hossein Safarpour, Mahdi Abdoli Shadbad, Niloufar Sadat Nourbakhsh, Antonella Argentiero, Sina Taefehshokr, Neda Jalili Tabrizi, Omid Kooshkaki, Reza Vaezi Astamal,[...]. Molecules 2021
13
16

RNA Dysregulation: An Expanding Source of Cancer Immunotherapy Targets.
Yang Pan, Kathryn E Kadash-Edmondson, Robert Wang, John Phillips, Song Liu, Antoni Ribas, Richard Aplenc, Owen N Witte, Yi Xing. Trends Pharmacol Sci 2021
4
25

The central role of noncoding RNA in the brain.
Boris Guennewig, Antony A Cooper. Int Rev Neurobiol 2014
49
16

Field Carcinogenesis in Cancer Evolution: What the Cell Is Going On?
Ansam Sinjab, Guangchun Han, Linghua Wang, Humam Kadara. Cancer Res 2020
2
50

Detection of aberrant splicing events in RNA-seq data using FRASER.
Christian Mertes, Ines F Scheller, Vicente A Yépez, Muhammed H Çelik, Yingjiqiong Liang, Laura S Kremer, Mirjana Gusic, Holger Prokisch, Julien Gagneur. Nat Commun 2021
11
16

Imaging individual mRNA molecules using multiple singly labeled probes.
Arjun Raj, Patrick van den Bogaard, Scott A Rifkin, Alexander van Oudenaarden, Sanjay Tyagi. Nat Methods 2008
16

Treg-inducing capacity of genomic DNA of Bifidobacterium longum subsp. infantis.
Dongmei Li, Jie Cheng, Ziang Zhu, Marta Catalfamo, David Goerlitz, Oliver J Lawless, Luke Tallon, Lisa Sadzewicz, Richard Calderone, Joseph A Bellanti. Allergy Asthma Proc 2020
7
16

A pan-cancer single-cell transcriptional atlas of tumor infiltrating myeloid cells.
Sijin Cheng, Ziyi Li, Ranran Gao, Baocai Xing, Yunong Gao, Yu Yang, Shishang Qin, Lei Zhang, Hanqiang Ouyang, Peng Du,[...]. Cell 2021
38
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.