A citation-based method for searching scientific literature

Wei Xue, Xu-Kai Ma, Li Yang. Sci China Life Sci 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The biogenesis and emerging roles of circular RNAs.
Ling-Ling Chen. Nat Rev Mol Cell Biol 2016
100

Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed.
Agnieszka Rybak-Wolf, Christin Stottmeister, Petar Glažar, Marvin Jens, Natalia Pino, Sebastian Giusti, Mor Hanan, Mikaela Behm, Osnat Bartok, Reut Ashwal-Fluss,[...]. Mol Cell 2015
100

Structure and Degradation of Circular RNAs Regulate PKR Activation in Innate Immunity.
Chu-Xiao Liu, Xiang Li, Fang Nan, Shan Jiang, Xiang Gao, Si-Kun Guo, Wei Xue, Yange Cui, Kaige Dong, Huihua Ding,[...]. Cell 2019
355
100

The Biogenesis, Functions, and Challenges of Circular RNAs.
Xiang Li, Li Yang, Ling-Ling Chen. Mol Cell 2018
100



Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development.
Linda Szabo, Robert Morey, Nathan J Palpant, Peter L Wang, Nastaran Afari, Chuan Jiang, Mana M Parast, Charles E Murry, Louise C Laurent, Julia Salzman. Genome Biol 2015
372
100

Detecting and characterizing circular RNAs.
William R Jeck, Norman E Sharpless. Nat Biotechnol 2014
100

Accurate quantification of circular RNAs identifies extensive circular isoform switching events.
Jinyang Zhang, Shuai Chen, Jingwen Yang, Fangqing Zhao. Nat Commun 2020
73
100

Scrambled exons.
J M Nigro, K R Cho, E R Fearon, S E Kern, J M Ruppert, J D Oliner, K W Kinzler, B Vogelstein. Cell 1991
697
100


Screening for functional circular RNAs using the CRISPR-Cas13 system.
Siqi Li, Xiang Li, Wei Xue, Lin Zhang, Liang-Zhong Yang, Shi-Meng Cao, Yun-Ni Lei, Chu-Xiao Liu, Si-Kun Guo, Lin Shan,[...]. Nat Methods 2021
86
100

A spliced intron accumulates as a lariat in the nucleus of T cells.
L Qian, M N Vu, M Carter, M F Wilkinson. Nucleic Acids Res 1992
61
100

The biogenesis, biology and characterization of circular RNAs.
Lasse S Kristensen, Maria S Andersen, Lotte V W Stagsted, Karoline K Ebbesen, Thomas B Hansen, Jørgen Kjems. Nat Rev Genet 2019
100

Expanded Expression Landscape and Prioritization of Circular RNAs in Mammals.
Peifeng Ji, Wanying Wu, Shuai Chen, Yi Zheng, Lin Zhou, Jinyang Zhang, Hao Cheng, Jin Yan, Shaogeng Zhang, Penghui Yang,[...]. Cell Rep 2019
136
100


Circular transcripts of the testis-determining gene Sry in adult mouse testis.
B Capel, A Swain, S Nicolis, A Hacker, M Walter, P Koopman, P Goodfellow, R Lovell-Badge. Cell 1993
798
100

Widespread and Functional RNA Circularization in Localized Prostate Cancer.
Sujun Chen, Vincent Huang, Xin Xu, Julie Livingstone, Fraser Soares, Jouhyun Jeon, Yong Zeng, Junjie Tony Hua, Jessica Petricca, Haiyang Guo,[...]. Cell 2019
235
100

Diverse alternative back-splicing and alternative splicing landscape of circular RNAs.
Xiao-Ou Zhang, Rui Dong, Yang Zhang, Jia-Lin Zhang, Zheng Luo, Jun Zhang, Ling-Ling Chen, Li Yang. Genome Res 2016
512
100

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads.
Mihaela Pertea, Geo M Pertea, Corina M Antonescu, Tsung-Cheng Chang, Joshua T Mendell, Steven L Salzberg. Nat Biotechnol 2015
100

Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types.
Julia Salzman, Charles Gawad, Peter Lincoln Wang, Norman Lacayo, Patrick O Brown. PLoS One 2012
100

Long noncoding RNAs with snoRNA ends.
Qing-Fei Yin, Li Yang, Yang Zhang, Jian-Feng Xiang, Yue-Wei Wu, Gordon G Carmichael, Ling-Ling Chen. Mol Cell 2012
287
100

Quantifying circular RNA expression from RNA-seq data using model-based framework.
Musheng Li, Xueying Xie, Jing Zhou, Mengying Sheng, Xiaofeng Yin, Eun-A Ko, Tong Zhou, Wanjun Gu. Bioinformatics 2017
39
100

Detecting circular RNAs: bioinformatic and experimental challenges.
Linda Szabo, Julia Salzman. Nat Rev Genet 2016
395
100

Splicing noncoding RNAs from the inside out.
Li Yang. Wiley Interdiscip Rev RNA 2015
33
100

CIRCpedia v2: An Updated Database for Comprehensive Circular RNA Annotation and Expression Comparison.
Rui Dong, Xu-Kai Ma, Guo-Wei Li, Li Yang. Genomics Proteomics Bioinformatics 2018
127
100

Circular RNAs: diversity of form and function.
Erika Lasda, Roy Parker. RNA 2014
773
100

Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation.
Jakub O Westholm, Pedro Miura, Sara Olson, Sol Shenker, Brian Joseph, Piero Sanfilippo, Susan E Celniker, Brenton R Graveley, Eric C Lai. Cell Rep 2014
612
100

Computational Strategies for Exploring Circular RNAs.
Yuan Gao, Fangqing Zhao. Trends Genet 2018
85
100

Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity.
Xintian You, Irena Vlatkovic, Ana Babic, Tristan Will, Irina Epstein, Georgi Tushev, Güney Akbalik, Mantian Wang, Caspar Glock, Claudia Quedenau,[...]. Nat Neurosci 2015
715
100

Circular intronic long noncoding RNAs.
Yang Zhang, Xiao-Ou Zhang, Tian Chen, Jian-Feng Xiang, Qing-Fei Yin, Yu-Hang Xing, Shanshan Zhu, Li Yang, Ling-Ling Chen. Mol Cell 2013
100

Coordinated circRNA Biogenesis and Function with NF90/NF110 in Viral Infection.
Xiang Li, Chu-Xiao Liu, Wei Xue, Yang Zhang, Shan Jiang, Qing-Fei Yin, Jia Wei, Run-Wen Yao, Li Yang, Ling-Ling Chen. Mol Cell 2017
359
100

Characterization of Circular RNAs.
Yang Zhang, Li Yang, Ling-Ling Chen. Methods Mol Biol 2016
31
100

Circular RNAs are a large class of animal RNAs with regulatory potency.
Sebastian Memczak, Marvin Jens, Antigoni Elefsinioti, Francesca Torti, Janna Krueger, Agnieszka Rybak, Luisa Maier, Sebastian D Mackowiak, Lea H Gregersen, Mathias Munschauer,[...]. Nature 2013
100

The Diversity of Long Noncoding RNAs and Their Generation.
Huang Wu, Li Yang, Ling-Ling Chen. Trends Genet 2017
183
100

The Biogenesis of Nascent Circular RNAs.
Yang Zhang, Wei Xue, Xiang Li, Jun Zhang, Siye Chen, Jia-Lin Zhang, Li Yang, Ling-Ling Chen. Cell Rep 2016
334
100

BEDTools: a flexible suite of utilities for comparing genomic features.
Aaron R Quinlan, Ira M Hall. Bioinformatics 2010
100

Mis-splicing yields circular RNA molecules.
C Cocquerelle, B Mascrez, D Hétuin, B Bailleul. FASEB J 1993
774
100

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
100

HISAT: a fast spliced aligner with low memory requirements.
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
100

Comprehensive identification of internal structure and alternative splicing events in circular RNAs.
Yuan Gao, Jinfeng Wang, Yi Zheng, Jinyang Zhang, Shuai Chen, Fangqing Zhao. Nat Commun 2016
180
100

Genome-wide identification of cancer-specific alternative splicing in circRNA.
Jing Feng, Ke Chen, Xin Dong, Xiaolong Xu, Yuxuan Jin, Xinyang Zhang, Wenbo Chen, Yujing Han, Lin Shao, Yang Gao,[...]. Mol Cancer 2019
50
100

Transcriptome-wide discovery of circular RNAs in Archaea.
Miri Danan, Schraga Schwartz, Sarit Edelheit, Rotem Sorek. Nucleic Acids Res 2012
382
100

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
100

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Ben Langmead, Cole Trapnell, Mihai Pop, Steven L Salzberg. Genome Biol 2009
100

MapSplice: accurate mapping of RNA-seq reads for splice junction discovery.
Kai Wang, Darshan Singh, Zheng Zeng, Stephen J Coleman, Yan Huang, Gleb L Savich, Xiaping He, Piotr Mieczkowski, Sara A Grimm, Charles M Perou,[...]. Nucleic Acids Res 2010
684
100

Reconstruction of full-length circular RNAs enables isoform-level quantification.
Yi Zheng, Peifeng Ji, Shuai Chen, Lingling Hou, Fangqing Zhao. Genome Med 2019
74
100

CIRCexplorer3: A CLEAR Pipeline for Direct Comparison of Circular and Linear RNA Expression.
Xu-Kai Ma, Meng-Ran Wang, Chu-Xiao Liu, Rui Dong, Gordon G Carmichael, Ling-Ling Chen, Li Yang. Genomics Proteomics Bioinformatics 2019
28
100

Is an observed non-co-linear RNA product spliced in trans, in cis or just in vitro?
Chun-Ying Yu, Hsiao-Jung Liu, Li-Yuan Hung, Hung-Chih Kuo, Trees-Juen Chuang. Nucleic Acids Res 2014
34
100

A 360° view of circular RNAs: From biogenesis to functions.
Jeremy E Wilusz. Wiley Interdiscip Rev RNA 2018
278
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.