Wei Xue, Xu-Kai Ma, Li Yang. Sci China Life Sci 2021
Times Cited: 1
Times Cited: 1
Times Cited
Times Co-cited
Similarity
100
Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed.
Agnieszka Rybak-Wolf, Christin Stottmeister, Petar Glažar, Marvin Jens, Natalia Pino, Sebastian Giusti, Mor Hanan, Mikaela Behm, Osnat Bartok, Reut Ashwal-Fluss,[...]. Mol Cell 2015
Agnieszka Rybak-Wolf, Christin Stottmeister, Petar Glažar, Marvin Jens, Natalia Pino, Sebastian Giusti, Mor Hanan, Mikaela Behm, Osnat Bartok, Reut Ashwal-Fluss,[...]. Mol Cell 2015
100
Structure and Degradation of Circular RNAs Regulate PKR Activation in Innate Immunity.
Chu-Xiao Liu, Xiang Li, Fang Nan, Shan Jiang, Xiang Gao, Si-Kun Guo, Wei Xue, Yange Cui, Kaige Dong, Huihua Ding,[...]. Cell 2019
Chu-Xiao Liu, Xiang Li, Fang Nan, Shan Jiang, Xiang Gao, Si-Kun Guo, Wei Xue, Yange Cui, Kaige Dong, Huihua Ding,[...]. Cell 2019
100
The Biogenesis, Functions, and Challenges of Circular RNAs.
Xiang Li, Li Yang, Ling-Ling Chen. Mol Cell 2018
Xiang Li, Li Yang, Ling-Ling Chen. Mol Cell 2018
100
The expanding regulatory mechanisms and cellular functions of circular RNAs.
Ling-Ling Chen. Nat Rev Mol Cell Biol 2020
Ling-Ling Chen. Nat Rev Mol Cell Biol 2020
100
Fast and accurate short read alignment with Burrows-Wheeler transform.
Heng Li, Richard Durbin. Bioinformatics 2009
Heng Li, Richard Durbin. Bioinformatics 2009
100
Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development.
Linda Szabo, Robert Morey, Nathan J Palpant, Peter L Wang, Nastaran Afari, Chuan Jiang, Mana M Parast, Charles E Murry, Louise C Laurent, Julia Salzman. Genome Biol 2015
Linda Szabo, Robert Morey, Nathan J Palpant, Peter L Wang, Nastaran Afari, Chuan Jiang, Mana M Parast, Charles E Murry, Louise C Laurent, Julia Salzman. Genome Biol 2015
100
100
Accurate quantification of circular RNAs identifies extensive circular isoform switching events.
Jinyang Zhang, Shuai Chen, Jingwen Yang, Fangqing Zhao. Nat Commun 2020
Jinyang Zhang, Shuai Chen, Jingwen Yang, Fangqing Zhao. Nat Commun 2020
100
Scrambled exons.
J M Nigro, K R Cho, E R Fearon, S E Kern, J M Ruppert, J D Oliner, K W Kinzler, B Vogelstein. Cell 1991
J M Nigro, K R Cho, E R Fearon, S E Kern, J M Ruppert, J D Oliner, K W Kinzler, B Vogelstein. Cell 1991
100
An improved method for circular RNA purification using RNase R that efficiently removes linear RNAs containing G-quadruplexes or structured 3' ends.
Mei-Sheng Xiao, Jeremy E Wilusz. Nucleic Acids Res 2019
Mei-Sheng Xiao, Jeremy E Wilusz. Nucleic Acids Res 2019
100
Screening for functional circular RNAs using the CRISPR-Cas13 system.
Siqi Li, Xiang Li, Wei Xue, Lin Zhang, Liang-Zhong Yang, Shi-Meng Cao, Yun-Ni Lei, Chu-Xiao Liu, Si-Kun Guo, Lin Shan,[...]. Nat Methods 2021
Siqi Li, Xiang Li, Wei Xue, Lin Zhang, Liang-Zhong Yang, Shi-Meng Cao, Yun-Ni Lei, Chu-Xiao Liu, Si-Kun Guo, Lin Shan,[...]. Nat Methods 2021
100
A spliced intron accumulates as a lariat in the nucleus of T cells.
L Qian, M N Vu, M Carter, M F Wilkinson. Nucleic Acids Res 1992
L Qian, M N Vu, M Carter, M F Wilkinson. Nucleic Acids Res 1992
100
The biogenesis, biology and characterization of circular RNAs.
Lasse S Kristensen, Maria S Andersen, Lotte V W Stagsted, Karoline K Ebbesen, Thomas B Hansen, Jørgen Kjems. Nat Rev Genet 2019
Lasse S Kristensen, Maria S Andersen, Lotte V W Stagsted, Karoline K Ebbesen, Thomas B Hansen, Jørgen Kjems. Nat Rev Genet 2019
100
Expanded Expression Landscape and Prioritization of Circular RNAs in Mammals.
Peifeng Ji, Wanying Wu, Shuai Chen, Yi Zheng, Lin Zhou, Jinyang Zhang, Hao Cheng, Jin Yan, Shaogeng Zhang, Penghui Yang,[...]. Cell Rep 2019
Peifeng Ji, Wanying Wu, Shuai Chen, Yi Zheng, Lin Zhou, Jinyang Zhang, Hao Cheng, Jin Yan, Shaogeng Zhang, Penghui Yang,[...]. Cell Rep 2019
100
Improved circRNA Identification by Combining Prediction Algorithms.
Thomas B Hansen. Front Cell Dev Biol 2018
Thomas B Hansen. Front Cell Dev Biol 2018
100
Circular transcripts of the testis-determining gene Sry in adult mouse testis.
B Capel, A Swain, S Nicolis, A Hacker, M Walter, P Koopman, P Goodfellow, R Lovell-Badge. Cell 1993
B Capel, A Swain, S Nicolis, A Hacker, M Walter, P Koopman, P Goodfellow, R Lovell-Badge. Cell 1993
100
Widespread and Functional RNA Circularization in Localized Prostate Cancer.
Sujun Chen, Vincent Huang, Xin Xu, Julie Livingstone, Fraser Soares, Jouhyun Jeon, Yong Zeng, Junjie Tony Hua, Jessica Petricca, Haiyang Guo,[...]. Cell 2019
Sujun Chen, Vincent Huang, Xin Xu, Julie Livingstone, Fraser Soares, Jouhyun Jeon, Yong Zeng, Junjie Tony Hua, Jessica Petricca, Haiyang Guo,[...]. Cell 2019
100
Diverse alternative back-splicing and alternative splicing landscape of circular RNAs.
Xiao-Ou Zhang, Rui Dong, Yang Zhang, Jia-Lin Zhang, Zheng Luo, Jun Zhang, Ling-Ling Chen, Li Yang. Genome Res 2016
Xiao-Ou Zhang, Rui Dong, Yang Zhang, Jia-Lin Zhang, Zheng Luo, Jun Zhang, Ling-Ling Chen, Li Yang. Genome Res 2016
100
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads.
Mihaela Pertea, Geo M Pertea, Corina M Antonescu, Tsung-Cheng Chang, Joshua T Mendell, Steven L Salzberg. Nat Biotechnol 2015
Mihaela Pertea, Geo M Pertea, Corina M Antonescu, Tsung-Cheng Chang, Joshua T Mendell, Steven L Salzberg. Nat Biotechnol 2015
100
Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types.
Julia Salzman, Charles Gawad, Peter Lincoln Wang, Norman Lacayo, Patrick O Brown. PLoS One 2012
Julia Salzman, Charles Gawad, Peter Lincoln Wang, Norman Lacayo, Patrick O Brown. PLoS One 2012
100
Long noncoding RNAs with snoRNA ends.
Qing-Fei Yin, Li Yang, Yang Zhang, Jian-Feng Xiang, Yue-Wei Wu, Gordon G Carmichael, Ling-Ling Chen. Mol Cell 2012
Qing-Fei Yin, Li Yang, Yang Zhang, Jian-Feng Xiang, Yue-Wei Wu, Gordon G Carmichael, Ling-Ling Chen. Mol Cell 2012
100
Quantifying circular RNA expression from RNA-seq data using model-based framework.
Musheng Li, Xueying Xie, Jing Zhou, Mengying Sheng, Xiaofeng Yin, Eun-A Ko, Tong Zhou, Wanjun Gu. Bioinformatics 2017
Musheng Li, Xueying Xie, Jing Zhou, Mengying Sheng, Xiaofeng Yin, Eun-A Ko, Tong Zhou, Wanjun Gu. Bioinformatics 2017
100
Detecting circular RNAs: bioinformatic and experimental challenges.
Linda Szabo, Julia Salzman. Nat Rev Genet 2016
Linda Szabo, Julia Salzman. Nat Rev Genet 2016
100
CIRCpedia v2: An Updated Database for Comprehensive Circular RNA Annotation and Expression Comparison.
Rui Dong, Xu-Kai Ma, Guo-Wei Li, Li Yang. Genomics Proteomics Bioinformatics 2018
Rui Dong, Xu-Kai Ma, Guo-Wei Li, Li Yang. Genomics Proteomics Bioinformatics 2018
100
Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation.
Jakub O Westholm, Pedro Miura, Sara Olson, Sol Shenker, Brian Joseph, Piero Sanfilippo, Susan E Celniker, Brenton R Graveley, Eric C Lai. Cell Rep 2014
Jakub O Westholm, Pedro Miura, Sara Olson, Sol Shenker, Brian Joseph, Piero Sanfilippo, Susan E Celniker, Brenton R Graveley, Eric C Lai. Cell Rep 2014
100
100
Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity.
Xintian You, Irena Vlatkovic, Ana Babic, Tristan Will, Irina Epstein, Georgi Tushev, Güney Akbalik, Mantian Wang, Caspar Glock, Claudia Quedenau,[...]. Nat Neurosci 2015
Xintian You, Irena Vlatkovic, Ana Babic, Tristan Will, Irina Epstein, Georgi Tushev, Güney Akbalik, Mantian Wang, Caspar Glock, Claudia Quedenau,[...]. Nat Neurosci 2015
100
Circular intronic long noncoding RNAs.
Yang Zhang, Xiao-Ou Zhang, Tian Chen, Jian-Feng Xiang, Qing-Fei Yin, Yu-Hang Xing, Shanshan Zhu, Li Yang, Ling-Ling Chen. Mol Cell 2013
Yang Zhang, Xiao-Ou Zhang, Tian Chen, Jian-Feng Xiang, Qing-Fei Yin, Yu-Hang Xing, Shanshan Zhu, Li Yang, Ling-Ling Chen. Mol Cell 2013
100
Coordinated circRNA Biogenesis and Function with NF90/NF110 in Viral Infection.
Xiang Li, Chu-Xiao Liu, Wei Xue, Yang Zhang, Shan Jiang, Qing-Fei Yin, Jia Wei, Run-Wen Yao, Li Yang, Ling-Ling Chen. Mol Cell 2017
Xiang Li, Chu-Xiao Liu, Wei Xue, Yang Zhang, Shan Jiang, Qing-Fei Yin, Jia Wei, Run-Wen Yao, Li Yang, Ling-Ling Chen. Mol Cell 2017
100
100
Circular RNAs are a large class of animal RNAs with regulatory potency.
Sebastian Memczak, Marvin Jens, Antigoni Elefsinioti, Francesca Torti, Janna Krueger, Agnieszka Rybak, Luisa Maier, Sebastian D Mackowiak, Lea H Gregersen, Mathias Munschauer,[...]. Nature 2013
Sebastian Memczak, Marvin Jens, Antigoni Elefsinioti, Francesca Torti, Janna Krueger, Agnieszka Rybak, Luisa Maier, Sebastian D Mackowiak, Lea H Gregersen, Mathias Munschauer,[...]. Nature 2013
100
The Diversity of Long Noncoding RNAs and Their Generation.
Huang Wu, Li Yang, Ling-Ling Chen. Trends Genet 2017
Huang Wu, Li Yang, Ling-Ling Chen. Trends Genet 2017
100
The Biogenesis of Nascent Circular RNAs.
Yang Zhang, Wei Xue, Xiang Li, Jun Zhang, Siye Chen, Jia-Lin Zhang, Li Yang, Ling-Ling Chen. Cell Rep 2016
Yang Zhang, Wei Xue, Xiang Li, Jun Zhang, Siye Chen, Jia-Lin Zhang, Li Yang, Ling-Ling Chen. Cell Rep 2016
100
BEDTools: a flexible suite of utilities for comparing genomic features.
Aaron R Quinlan, Ira M Hall. Bioinformatics 2010
Aaron R Quinlan, Ira M Hall. Bioinformatics 2010
100
Mis-splicing yields circular RNA molecules.
C Cocquerelle, B Mascrez, D Hétuin, B Bailleul. FASEB J 1993
C Cocquerelle, B Mascrez, D Hétuin, B Bailleul. FASEB J 1993
100
STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
100
HISAT: a fast spliced aligner with low memory requirements.
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
100
Comprehensive identification of internal structure and alternative splicing events in circular RNAs.
Yuan Gao, Jinfeng Wang, Yi Zheng, Jinyang Zhang, Shuai Chen, Fangqing Zhao. Nat Commun 2016
Yuan Gao, Jinfeng Wang, Yi Zheng, Jinyang Zhang, Shuai Chen, Fangqing Zhao. Nat Commun 2016
100
Genome-wide identification of cancer-specific alternative splicing in circRNA.
Jing Feng, Ke Chen, Xin Dong, Xiaolong Xu, Yuxuan Jin, Xinyang Zhang, Wenbo Chen, Yujing Han, Lin Shao, Yang Gao,[...]. Mol Cancer 2019
Jing Feng, Ke Chen, Xin Dong, Xiaolong Xu, Yuxuan Jin, Xinyang Zhang, Wenbo Chen, Yujing Han, Lin Shao, Yang Gao,[...]. Mol Cancer 2019
100
Transcriptome-wide discovery of circular RNAs in Archaea.
Miri Danan, Schraga Schwartz, Sarit Edelheit, Rotem Sorek. Nucleic Acids Res 2012
Miri Danan, Schraga Schwartz, Sarit Edelheit, Rotem Sorek. Nucleic Acids Res 2012
100
100
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Ben Langmead, Cole Trapnell, Mihai Pop, Steven L Salzberg. Genome Biol 2009
Ben Langmead, Cole Trapnell, Mihai Pop, Steven L Salzberg. Genome Biol 2009
100
MapSplice: accurate mapping of RNA-seq reads for splice junction discovery.
Kai Wang, Darshan Singh, Zheng Zeng, Stephen J Coleman, Yan Huang, Gleb L Savich, Xiaping He, Piotr Mieczkowski, Sara A Grimm, Charles M Perou,[...]. Nucleic Acids Res 2010
Kai Wang, Darshan Singh, Zheng Zeng, Stephen J Coleman, Yan Huang, Gleb L Savich, Xiaping He, Piotr Mieczkowski, Sara A Grimm, Charles M Perou,[...]. Nucleic Acids Res 2010
100
Reconstruction of full-length circular RNAs enables isoform-level quantification.
Yi Zheng, Peifeng Ji, Shuai Chen, Lingling Hou, Fangqing Zhao. Genome Med 2019
Yi Zheng, Peifeng Ji, Shuai Chen, Lingling Hou, Fangqing Zhao. Genome Med 2019
100
CIRCexplorer3: A CLEAR Pipeline for Direct Comparison of Circular and Linear RNA Expression.
Xu-Kai Ma, Meng-Ran Wang, Chu-Xiao Liu, Rui Dong, Gordon G Carmichael, Ling-Ling Chen, Li Yang. Genomics Proteomics Bioinformatics 2019
Xu-Kai Ma, Meng-Ran Wang, Chu-Xiao Liu, Rui Dong, Gordon G Carmichael, Ling-Ling Chen, Li Yang. Genomics Proteomics Bioinformatics 2019
100
Is an observed non-co-linear RNA product spliced in trans, in cis or just in vitro?
Chun-Ying Yu, Hsiao-Jung Liu, Li-Yuan Hung, Hung-Chih Kuo, Trees-Juen Chuang. Nucleic Acids Res 2014
Chun-Ying Yu, Hsiao-Jung Liu, Li-Yuan Hung, Hung-Chih Kuo, Trees-Juen Chuang. Nucleic Acids Res 2014
100
A 360° view of circular RNAs: From biogenesis to functions.
Jeremy E Wilusz. Wiley Interdiscip Rev RNA 2018
Jeremy E Wilusz. Wiley Interdiscip Rev RNA 2018
100
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.