Xianfang Tang, Lijun Cai, Yajie Meng, JunLin Xu, Changcheng Lu, Jialiang Yang. Front Immunol 2021
Times Cited: 16
Times Cited: 16
Times Cited
Times Co-cited
Similarity
Human geroprotector discovery by targeting the converging subnetworks of aging and age-related diseases.
Jialiang Yang, Shouneng Peng, Bin Zhang, Sander Houten, Eric Schadt, Jun Zhu, Yousin Suh, Zhidong Tu. Geroscience 2020
Jialiang Yang, Shouneng Peng, Bin Zhang, Sander Houten, Eric Schadt, Jun Zhu, Yousin Suh, Zhidong Tu. Geroscience 2020
50
An Improved Anticancer Drug-Response Prediction Based on an Ensemble Method Integrating Matrix Completion and Ridge Regression.
Chuanying Liu, Dong Wei, Ju Xiang, Fuquan Ren, Li Huang, Jidong Lang, Geng Tian, Yushuang Li, Jialiang Yang. Mol Ther Nucleic Acids 2020
Chuanying Liu, Dong Wei, Ju Xiang, Fuquan Ren, Li Huang, Jidong Lang, Geng Tian, Yushuang Li, Jialiang Yang. Mol Ther Nucleic Acids 2020
50
Probing antiviral drugs against SARS-CoV-2 through virus-drug association prediction based on the KATZ method.
Liqian Zhou, Juanjuan Wang, Guangyi Liu, Qingqing Lu, Ruyi Dong, Geng Tian, Jialiang Yang, Lihong Peng. Genomics 2020
Liqian Zhou, Juanjuan Wang, Guangyi Liu, Qingqing Lu, Ruyi Dong, Geng Tian, Jialiang Yang, Lihong Peng. Genomics 2020
37
A systematic study on drug-response associated genes using baseline gene expressions of the Cancer Cell Line Encyclopedia.
Xiaoming Liu, Jiasheng Yang, Yi Zhang, Yun Fang, Fayou Wang, Jun Wang, Xiaoqi Zheng, Jialiang Yang. Sci Rep 2016
Xiaoming Liu, Jiasheng Yang, Yi Zhang, Yun Fang, Fayou Wang, Jun Wang, Xiaoqi Zheng, Jialiang Yang. Sci Rep 2016
31
DrugBank 5.0: a major update to the DrugBank database for 2018.
David S Wishart, Yannick D Feunang, An C Guo, Elvis J Lo, Ana Marcu, Jason R Grant, Tanvir Sajed, Daniel Johnson, Carin Li, Zinat Sayeeda,[...]. Nucleic Acids Res 2018
David S Wishart, Yannick D Feunang, An C Guo, Elvis J Lo, Ana Marcu, Jason R Grant, Tanvir Sajed, Daniel Johnson, Carin Li, Zinat Sayeeda,[...]. Nucleic Acids Res 2018
31
Discover the network underlying the connections between aging and age-related diseases.
Jialiang Yang, Tao Huang, Won-Min Song, Francesca Petralia, Charles V Mobbs, Bin Zhang, Yong Zhao, Eric E Schadt, Jun Zhu, Zhidong Tu. Sci Rep 2016
Jialiang Yang, Tao Huang, Won-Min Song, Francesca Petralia, Charles V Mobbs, Bin Zhang, Yong Zhao, Eric E Schadt, Jun Zhu, Zhidong Tu. Sci Rep 2016
31
Prioritizing antiviral drugs against SARS-CoV-2 by integrating viral complete genome sequences and drug chemical structures.
Lihong Peng, Ling Shen, Junlin Xu, Xiongfei Tian, Fuxing Liu, Juanjuan Wang, Geng Tian, Jialiang Yang, Liqian Zhou. Sci Rep 2021
Lihong Peng, Ling Shen, Junlin Xu, Xiongfei Tian, Fuxing Liu, Juanjuan Wang, Geng Tian, Jialiang Yang, Liqian Zhou. Sci Rep 2021
33
Identifying Effective Antiviral Drugs Against SARS-CoV-2 by Drug Repositioning Through Virus-Drug Association Prediction.
Lihong Peng, Xiongfei Tian, Ling Shen, Ming Kuang, Tianbao Li, Geng Tian, Jialiang Yang, Liqian Zhou. Front Genet 2020
Lihong Peng, Xiongfei Tian, Ling Shen, Ming Kuang, Tianbao Li, Geng Tian, Jialiang Yang, Liqian Zhou. Front Genet 2020
36
Molecular Network-Based Drug Prediction in Thyroid Cancer.
Xingyu Xu, Haixia Long, Baohang Xi, Binbin Ji, Zejun Li, Yunyue Dang, Caiying Jiang, Yuhua Yao, Jialiang Yang. Int J Mol Sci 2019
Xingyu Xu, Haixia Long, Baohang Xi, Binbin Ji, Zejun Li, Yunyue Dang, Caiying Jiang, Yuhua Yao, Jialiang Yang. Int J Mol Sci 2019
40
Genomic variation, origin tracing, and vaccine development of SARS-CoV-2: A systematic review.
Tianbao Li, Tao Huang, Cheng Guo, Ailan Wang, Xiaoli Shi, Xiaofei Mo, Qingqing Lu, Jing Sun, Tingting Hui, Geng Tian,[...]. Innovation (N Y) 2021
Tianbao Li, Tao Huang, Cheng Guo, Ailan Wang, Xiaoli Shi, Xiaofei Mo, Qingqing Lu, Jing Sun, Tingting Hui, Geng Tian,[...]. Innovation (N Y) 2021
28
Drug repositioning based on similarity constrained probabilistic matrix factorization: COVID-19 as a case study.
Yajie Meng, Min Jin, Xianfang Tang, Junlin Xu. Appl Soft Comput 2021
Yajie Meng, Min Jin, Xianfang Tang, Junlin Xu. Appl Soft Comput 2021
40
A Next Generation Connectivity Map: L1000 Platform and the First 1,000,000 Profiles.
Aravind Subramanian, Rajiv Narayan, Steven M Corsello, David D Peck, Ted E Natoli, Xiaodong Lu, Joshua Gould, John F Davis, Andrew A Tubelli, Jacob K Asiedu,[...]. Cell 2017
Aravind Subramanian, Rajiv Narayan, Steven M Corsello, David D Peck, Ted E Natoli, Xiaodong Lu, Joshua Gould, John F Davis, Andrew A Tubelli, Jacob K Asiedu,[...]. Cell 2017
18
Evaluating DNA Methylation, Gene Expression, Somatic Mutation, and Their Combinations in Inferring Tumor Tissue-of-Origin.
Haiyan Liu, Chun Qiu, Bo Wang, Pingping Bing, Geng Tian, Xueliang Zhang, Jun Ma, Bingsheng He, Jialiang Yang. Front Cell Dev Biol 2021
Haiyan Liu, Chun Qiu, Bo Wang, Pingping Bing, Geng Tian, Xueliang Zhang, Jun Ma, Bingsheng He, Jialiang Yang. Front Cell Dev Biol 2021
18
TOOme: A Novel Computational Framework to Infer Cancer Tissue-of-Origin by Integrating Both Gene Mutation and Expression.
Binsheng He, Jidong Lang, Bo Wang, Xiaojun Liu, Qingqing Lu, Jianjun He, Wei Gao, Pingping Bing, Geng Tian, Jialiang Yang. Front Bioeng Biotechnol 2020
Binsheng He, Jidong Lang, Bo Wang, Xiaojun Liu, Qingqing Lu, Jianjun He, Wei Gao, Pingping Bing, Geng Tian, Jialiang Yang. Front Bioeng Biotechnol 2020
18
A machine learning framework to trace tumor tissue-of-origin of 13 types of cancer based on DNA somatic mutation.
Bingsheng He, Chan Dai, Jidong Lang, Pingping Bing, Geng Tian, Bo Wang, Jialiang Yang. Biochim Biophys Acta Mol Basis Dis 2020
Bingsheng He, Chan Dai, Jidong Lang, Pingping Bing, Geng Tian, Bo Wang, Jialiang Yang. Biochim Biophys Acta Mol Basis Dis 2020
27
Drug repositioning based on the heterogeneous information fusion graph convolutional network.
Lijun Cai, Changcheng Lu, Junlin Xu, Yajie Meng, Peng Wang, Xiangzheng Fu, Xiangxiang Zeng, Yansen Su. Brief Bioinform 2021
Lijun Cai, Changcheng Lu, Junlin Xu, Yajie Meng, Peng Wang, Xiangzheng Fu, Xiangxiang Zeng, Yansen Su. Brief Bioinform 2021
33
Predicting drug-disease associations through layer attention graph convolutional network.
Zhouxin Yu, Feng Huang, Xiaohan Zhao, Wenjie Xiao, Wen Zhang. Brief Bioinform 2021
Zhouxin Yu, Feng Huang, Xiaohan Zhao, Wenjie Xiao, Wen Zhang. Brief Bioinform 2021
18
Solving the apparent diversity-accuracy dilemma of recommender systems.
Tao Zhou, Zoltán Kuscsik, Jian-Guo Liu, Matús Medo, Joseph Rushton Wakeling, Yi-Cheng Zhang. Proc Natl Acad Sci U S A 2010
Tao Zhou, Zoltán Kuscsik, Jian-Guo Liu, Matús Medo, Joseph Rushton Wakeling, Yi-Cheng Zhang. Proc Natl Acad Sci U S A 2010
12
Prediction of drug-target interactions and drug repositioning via network-based inference.
Feixiong Cheng, Chuang Liu, Jing Jiang, Weiqiang Lu, Weihua Li, Guixia Liu, Weixing Zhou, Jin Huang, Yun Tang. PLoS Comput Biol 2012
Feixiong Cheng, Chuang Liu, Jing Jiang, Weiqiang Lu, Weihua Li, Guixia Liu, Weixing Zhou, Jin Huang, Yun Tang. PLoS Comput Biol 2012
12
Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy.
Hanchuan Peng, Fuhui Long, Chris Ding. IEEE Trans Pattern Anal Mach Intell 2005
Hanchuan Peng, Fuhui Long, Chris Ding. IEEE Trans Pattern Anal Mach Intell 2005
12
Network-based in silico drug efficacy screening.
Emre Guney, Jörg Menche, Marc Vidal, Albert-László Barábasi. Nat Commun 2016
Emre Guney, Jörg Menche, Marc Vidal, Albert-László Barábasi. Nat Commun 2016
12
Neighborhood Regularized Logistic Matrix Factorization for Drug-Target Interaction Prediction.
Yong Liu, Min Wu, Chunyan Miao, Peilin Zhao, Xiao-Li Li. PLoS Comput Biol 2016
Yong Liu, Min Wu, Chunyan Miao, Peilin Zhao, Xiao-Li Li. PLoS Comput Biol 2016
12
Sequence-based antigenic change prediction by a sparse learning method incorporating co-evolutionary information.
Jialiang Yang, Tong Zhang, Xiu-Feng Wan. PLoS One 2014
Jialiang Yang, Tong Zhang, Xiu-Feng Wan. PLoS One 2014
12
Applications of Bioinformatics and Systems Biology in Precision Medicine and Immunooncology.
Yudong Cai, Tao Huang, Jialiang Yang. Biomed Res Int 2018
Yudong Cai, Tao Huang, Jialiang Yang. Biomed Res Int 2018
50
DrugComboRanker: drug combination discovery based on target network analysis.
Lei Huang, Fuhai Li, Jianting Sheng, Xiaofeng Xia, Jinwen Ma, Ming Zhan, Stephen T C Wong. Bioinformatics 2014
Lei Huang, Fuhai Li, Jianting Sheng, Xiaofeng Xia, Jinwen Ma, Ming Zhan, Stephen T C Wong. Bioinformatics 2014
12
12
Data-driven prediction of drug effects and interactions.
Nicholas P Tatonetti, Patrick P Ye, Roxana Daneshjou, Russ B Altman. Sci Transl Med 2012
Nicholas P Tatonetti, Patrick P Ye, Roxana Daneshjou, Russ B Altman. Sci Transl Med 2012
12
The SIDER database of drugs and side effects.
Michael Kuhn, Ivica Letunic, Lars Juhl Jensen, Peer Bork. Nucleic Acids Res 2016
Michael Kuhn, Ivica Letunic, Lars Juhl Jensen, Peer Bork. Nucleic Acids Res 2016
12
Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases.
Ahmet Sureyya Rifaioglu, Heval Atas, Maria Jesus Martin, Rengul Cetin-Atalay, Volkan Atalay, Tunca Doğan. Brief Bioinform 2019
Ahmet Sureyya Rifaioglu, Heval Atas, Maria Jesus Martin, Rengul Cetin-Atalay, Volkan Atalay, Tunca Doğan. Brief Bioinform 2019
12
Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd.
Zichen Wang, Caroline D Monteiro, Kathleen M Jagodnik, Nicolas F Fernandez, Gregory W Gundersen, Andrew D Rouillard, Sherry L Jenkins, Axel S Feldmann, Kevin S Hu, Michael G McDermott,[...]. Nat Commun 2016
Zichen Wang, Caroline D Monteiro, Kathleen M Jagodnik, Nicolas F Fernandez, Gregory W Gundersen, Andrew D Rouillard, Sherry L Jenkins, Axel S Feldmann, Kevin S Hu, Michael G McDermott,[...]. Nat Commun 2016
12
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
12
The Cancer Genome Atlas (TCGA): an immeasurable source of knowledge.
Katarzyna Tomczak, Patrycja Czerwińska, Maciej Wiznerowicz. Contemp Oncol (Pozn) 2015
Katarzyna Tomczak, Patrycja Czerwińska, Maciej Wiznerowicz. Contemp Oncol (Pozn) 2015
12
WGCNA: an R package for weighted correlation network analysis.
Peter Langfelder, Steve Horvath. BMC Bioinformatics 2008
Peter Langfelder, Steve Horvath. BMC Bioinformatics 2008
12
Matrix completion with side information and its applications in predicting the antigenicity of influenza viruses.
Li Huang, Xianhong Li, Pengfei Guo, Yuhua Yao, Bo Liao, Weiwei Zhang, Fayou Wang, Jiasheng Yang, Yulong Zhao, Hailiang Sun,[...]. Bioinformatics 2017
Li Huang, Xianhong Li, Pengfei Guo, Yuhua Yao, Bo Liao, Weiwei Zhang, Fayou Wang, Jiasheng Yang, Yulong Zhao, Hailiang Sun,[...]. Bioinformatics 2017
18
Revealing Drug-Target Interactions with Computational Models and Algorithms.
Liqian Zhou, Zejun Li, Jialiang Yang, Geng Tian, Fuxing Liu, Hong Wen, Li Peng, Min Chen, Ju Xiang, Lihong Peng. Molecules 2019
Liqian Zhou, Zejun Li, Jialiang Yang, Geng Tian, Fuxing Liu, Hong Wen, Li Peng, Min Chen, Ju Xiang, Lihong Peng. Molecules 2019
12
Using sequence data to infer the antigenicity of influenza virus.
Hailiang Sun, Jialiang Yang, Tong Zhang, Li-Ping Long, Kun Jia, Guohua Yang, Richard J Webby, Xiu-Feng Wan. mBio 2013
Hailiang Sun, Jialiang Yang, Tong Zhang, Li-Ping Long, Kun Jia, Guohua Yang, Richard J Webby, Xiu-Feng Wan. mBio 2013
12
A Novel Coronavirus from Patients with Pneumonia in China, 2019.
Na Zhu, Dingyu Zhang, Wenling Wang, Xingwang Li, Bo Yang, Jingdong Song, Xiang Zhao, Baoying Huang, Weifeng Shi, Roujian Lu,[...]. N Engl J Med 2020
Na Zhu, Dingyu Zhang, Wenling Wang, Xingwang Li, Bo Yang, Jingdong Song, Xiang Zhao, Baoying Huang, Weifeng Shi, Roujian Lu,[...]. N Engl J Med 2020
12
Predicting the frequencies of drug side effects.
Diego Galeano, Shantao Li, Mark Gerstein, Alberto Paccanaro. Nat Commun 2020
Diego Galeano, Shantao Li, Mark Gerstein, Alberto Paccanaro. Nat Commun 2020
13
12
Compassionate Use of Remdesivir for Patients with Severe Covid-19.
Jonathan Grein, Norio Ohmagari, Daniel Shin, George Diaz, Erika Asperges, Antonella Castagna, Torsten Feldt, Gary Green, Margaret L Green, François-Xavier Lescure,[...]. N Engl J Med 2020
Jonathan Grein, Norio Ohmagari, Daniel Shin, George Diaz, Erika Asperges, Antonella Castagna, Torsten Feldt, Gary Green, Margaret L Green, François-Xavier Lescure,[...]. N Engl J Med 2020
12
Drug repurposing: progress, challenges and recommendations.
Sudeep Pushpakom, Francesco Iorio, Patrick A Eyers, K Jane Escott, Shirley Hopper, Andrew Wells, Andrew Doig, Tim Guilliams, Joanna Latimer, Christine McNamee,[...]. Nat Rev Drug Discov 2019
Sudeep Pushpakom, Francesco Iorio, Patrick A Eyers, K Jane Escott, Shirley Hopper, Andrew Wells, Andrew Doig, Tim Guilliams, Joanna Latimer, Christine McNamee,[...]. Nat Rev Drug Discov 2019
12
The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease.
Justin Lamb, Emily D Crawford, David Peck, Joshua W Modell, Irene C Blat, Matthew J Wrobel, Jim Lerner, Jean-Philippe Brunet, Aravind Subramanian, Kenneth N Ross,[...]. Science 2006
Justin Lamb, Emily D Crawford, David Peck, Joshua W Modell, Irene C Blat, Matthew J Wrobel, Jim Lerner, Jean-Philippe Brunet, Aravind Subramanian, Kenneth N Ross,[...]. Science 2006
12
SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor.
Markus Hoffmann, Hannah Kleine-Weber, Simon Schroeder, Nadine Krüger, Tanja Herrler, Sandra Erichsen, Tobias S Schiergens, Georg Herrler, Nai-Huei Wu, Andreas Nitsche,[...]. Cell 2020
Markus Hoffmann, Hannah Kleine-Weber, Simon Schroeder, Nadine Krüger, Tanja Herrler, Sandra Erichsen, Tobias S Schiergens, Georg Herrler, Nai-Huei Wu, Andreas Nitsche,[...]. Cell 2020
12
Discovery and development of safe-in-man broad-spectrum antiviral agents.
Petter I Andersen, Aleksandr Ianevski, Hilde Lysvand, Astra Vitkauskiene, Valentyn Oksenych, Magnar Bjørås, Kaidi Telling, Irja Lutsar, Uga Dumpis, Yasuhiko Irie,[...]. Int J Infect Dis 2020
Petter I Andersen, Aleksandr Ianevski, Hilde Lysvand, Astra Vitkauskiene, Valentyn Oksenych, Magnar Bjørås, Kaidi Telling, Irja Lutsar, Uga Dumpis, Yasuhiko Irie,[...]. Int J Infect Dis 2020
12
Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing.
Sepideh Sadegh, Julian Matschinske, David B Blumenthal, Gihanna Galindez, Tim Kacprowski, Markus List, Reza Nasirigerdeh, Mhaned Oubounyt, Andreas Pichlmair, Tim Daniel Rose,[...]. Nat Commun 2020
Sepideh Sadegh, Julian Matschinske, David B Blumenthal, Gihanna Galindez, Tim Kacprowski, Markus List, Reza Nasirigerdeh, Mhaned Oubounyt, Andreas Pichlmair, Tim Daniel Rose,[...]. Nat Commun 2020
12
A prospective examination of circulating tumor cell profiles in non-small-cell lung cancer molecular subgroups.
C R Lindsay, V Faugeroux, S Michiels, E Pailler, F Facchinetti, D Ou, M V Bluthgen, C Pannet, M Ngo-Camus, G Bescher,[...]. Ann Oncol 2017
C R Lindsay, V Faugeroux, S Michiels, E Pailler, F Facchinetti, D Ou, M V Bluthgen, C Pannet, M Ngo-Camus, G Bescher,[...]. Ann Oncol 2017
12
PREDICT: a method for inferring novel drug indications with application to personalized medicine.
Assaf Gottlieb, Gideon Y Stein, Eytan Ruppin, Roded Sharan. Mol Syst Biol 2011
Assaf Gottlieb, Gideon Y Stein, Eytan Ruppin, Roded Sharan. Mol Syst Biol 2011
12
Remdesivir against COVID-19 and Other Viral Diseases.
Jakob J Malin, Isabelle Suárez, Vanessa Priesner, Gerd Fätkenheuer, Jan Rybniker. Clin Microbiol Rev 2020
Jakob J Malin, Isabelle Suárez, Vanessa Priesner, Gerd Fätkenheuer, Jan Rybniker. Clin Microbiol Rev 2020
12
LINGO, an efficient holographic text based method to calculate biophysical properties and intermolecular similarities.
David Vidal, Michael Thormann, Miquel Pons. J Chem Inf Model 2005
David Vidal, Michael Thormann, Miquel Pons. J Chem Inf Model 2005
12
AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility.
Garrett M Morris, Ruth Huey, William Lindstrom, Michel F Sanner, Richard K Belew, David S Goodsell, Arthur J Olson. J Comput Chem 2009
Garrett M Morris, Ruth Huey, William Lindstrom, Michel F Sanner, Richard K Belew, David S Goodsell, Arthur J Olson. J Comput Chem 2009
12
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.