A citation-based method for searching scientific literature

Tom van der Valk, Patrícia Pečnerová, David Díez-Del-Molino, Anders Bergström, Jonas Oppenheimer, Stefanie Hartmann, Georgios Xenikoudakis, Jessica A Thomas, Marianne Dehasque, Ekin Sağlıcan, Fatma Rabia Fidan, Ian Barnes, Shanlin Liu, Mehmet Somel, Peter D Heintzman, Pavel Nikolskiy, Beth Shapiro, Pontus Skoglund, Michael Hofreiter, Adrian M Lister, Anders Götherström, Love Dalén. Nature 2021
Times Cited: 26







List of co-cited articles
134 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.
Ludovic Orlando, Aurélien Ginolhac, Guojie Zhang, Duane Froese, Anders Albrechtsen, Mathias Stiller, Mikkel Schubert, Enrico Cappellini, Bent Petersen, Ida Moltke,[...]. Nature 2013
374
38

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters.
Hákon Jónsson, Aurélien Ginolhac, Mikkel Schubert, Philip L F Johnson, Ludovic Orlando. Bioinformatics 2013
498
15

Ancient DNA damage.
Jesse Dabney, Matthias Meyer, Svante Pääbo. Cold Spring Harb Perspect Biol 2013
140
15

The complete genome sequence of a Neanderthal from the Altai Mountains.
Kay Prüfer, Fernando Racimo, Nick Patterson, Flora Jay, Sriram Sankararaman, Susanna Sawyer, Anja Heinze, Gabriel Renaud, Peter H Sudmant, Cesare de Filippo,[...]. Nature 2014
882
15

Elephantid Genomes Reveal the Molecular Bases of Woolly Mammoth Adaptations to the Arctic.
Vincent J Lynch, Oscar C Bedoya-Reina, Aakrosh Ratan, Michael Sulak, Daniela I Drautz-Moses, George H Perry, Webb Miller, Stephan C Schuster. Cell Rep 2015
48
11

Protein sequences bound to mineral surfaces persist into deep time.
Beatrice Demarchi, Shaun Hall, Teresa Roncal-Herrero, Colin L Freeman, Jos Woolley, Molly K Crisp, Julie Wilson, Anna Fotakis, Roman Fischer, Benedikt M Kessler,[...]. Elife 2016
69
11

The genomic basis of adaptive evolution in threespine sticklebacks.
Felicity C Jones, Manfred G Grabherr, Yingguang Frank Chan, Pamela Russell, Evan Mauceli, Jeremy Johnson, Ross Swofford, Mono Pirun, Michael C Zody, Simon White,[...]. Nature 2012
973
11

Biomolecular characterization and protein sequences of the Campanian hadrosaur B. canadensis.
Mary H Schweitzer, Wenxia Zheng, Chris L Organ, Recep Avci, Zhiyong Suo, Lisa M Freimark, Valerie S Lebleu, Michael B Duncan, Matthew G Vander Heiden, John M Neveu,[...]. Science 2009
88
11

Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry.
John M Asara, Mary H Schweitzer, Lisa M Freimark, Matthew Phillips, Lewis C Cantley. Science 2007
120
11

Ancient pathogen genomics as an emerging tool for infectious disease research.
Maria A Spyrou, Kirsten I Bos, Alexander Herbig, Johannes Krause. Nat Rev Genet 2019
46
11

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
11

A draft genome of Yersinia pestis from victims of the Black Death.
Kirsten I Bos, Verena J Schuenemann, G Brian Golding, Hernán A Burbano, Nicholas Waglechner, Brian K Coombes, Joseph B McPhee, Sharon N DeWitte, Matthias Meyer, Sarah Schmedes,[...]. Nature 2011
294
11

Fifty thousand years of Arctic vegetation and megafaunal diet.
Eske Willerslev, John Davison, Mari Moora, Martin Zobel, Eric Coissac, Mary E Edwards, Eline D Lorenzen, Mette Vestergård, Galina Gussarova, James Haile,[...]. Nature 2014
149
11

A draft sequence of the Neandertal genome.
Richard E Green, Johannes Krause, Adrian W Briggs, Tomislav Maricic, Udo Stenzel, Martin Kircher, Nick Patterson, Heng Li, Weiwei Zhai, Markus Hsi-Yang Fritz,[...]. Science 2010
11

DNA sequences from the quagga, an extinct member of the horse family.
R Higuchi, B Bowman, M Freiberger, O A Ryder, A C Wilson. Nature 1984
290
11

Museomics identifies genetic erosion in two butterfly species across the 20th century in Finland.
Jérémy Gauthier, Mila Pajkovic, Samuel Neuenschwander, Lauri Kaila, Sarah Schmid, Ludovic Orlando, Nadir Alvarez. Mol Ecol Resour 2020
10
30

Hybridization Capture Using RAD Probes (hyRAD), a New Tool for Performing Genomic Analyses on Collection Specimens.
Tomasz Suchan, Camille Pitteloud, Nadezhda S Gerasimova, Anna Kostikova, Sarah Schmid, Nils Arrigo, Mila Pajkovic, Michał Ronikier, Nadir Alvarez. PLoS One 2016
58
11

Complete Columbian mammoth mitogenome suggests interbreeding with woolly mammoths.
Jacob Enk, Alison Devault, Regis Debruyne, Christine E King, Todd Treangen, Dennis O'Rourke, Steven L Salzberg, Daniel Fisher, Ross MacPhee, Hendrik Poinar. Genome Biol 2011
28
7


Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny.
Enrico Cappellini, Frido Welker, Luca Pandolfi, Jazmín Ramos-Madrigal, Diana Samodova, Patrick L Rüther, Anna K Fotakis, David Lyon, J Víctor Moreno-Mayar, Maia Bukhsianidze,[...]. Nature 2019
38
7

Macroevolutionary dynamics and historical biogeography of primate diversification inferred from a species supermatrix.
Mark S Springer, Robert W Meredith, John Gatesy, Christopher A Emerling, Jong Park, Daniel L Rabosky, Tanja Stadler, Cynthia Steiner, Oliver A Ryder, Jan E Janečka,[...]. PLoS One 2012
204
7

Enamel proteome shows that Gigantopithecus was an early diverging pongine.
Frido Welker, Jazmín Ramos-Madrigal, Martin Kuhlwilm, Wei Liao, Petra Gutenbrunner, Marc de Manuel, Diana Samodova, Meaghan Mackie, Morten E Allentoft, Anne-Marie Bacon,[...]. Nature 2019
25
8

Trends, rhythms, and aberrations in global climate 65 Ma to present.
J Zachos, M Pagani, L Sloan, E Thomas, K Billups. Science 2001
7


Genetics and ecological speciation.
Dolph Schluter, Gina L Conte. Proc Natl Acad Sci U S A 2009
306
7

On the causes of geographically heterogeneous parallel evolution in sticklebacks.
Bohao Fang, Petri Kemppainen, Paolo Momigliano, Xueyun Feng, Juha Merilä. Nat Ecol Evol 2020
21
9

Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles.
Pamela F Colosimo, Kim E Hosemann, Sarita Balabhadra, Guadalupe Villarreal, Mark Dickson, Jane Grimwood, Jeremy Schmutz, Richard M Myers, Dolph Schluter, David M Kingsley. Science 2005
871
7

Complete genomes reveal signatures of demographic and genetic declines in the woolly mammoth.
Eleftheria Palkopoulou, Swapan Mallick, Pontus Skoglund, Jacob Enk, Nadin Rohland, Heng Li, Ayça Omrak, Sergey Vartanyan, Hendrik Poinar, Anders Götherström,[...]. Curr Biol 2015
107
7

Genome-Based Sexing Provides Clues about Behavior and Social Structure in the Woolly Mammoth.
Patrícia Pečnerová, David Díez-Del-Molino, Nicolas Dussex, Tatiana Feuerborn, Johanna von Seth, Johannes van der Plicht, Pavel Nikolskiy, Alexei Tikhonov, Sergey Vartanyan, Love Dalén. Curr Biol 2017
13
15

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
Lam-Tung Nguyen, Heiko A Schmidt, Arndt von Haeseler, Bui Quang Minh. Mol Biol Evol 2015
7

Endogenous viruses: Connecting recent and ancient viral evolution.
Pakorn Aiewsakun, Aris Katzourakis. Virology 2015
95
7

Ancient human parvovirus B19 in Eurasia reveals its long-term association with humans.
Barbara Mühlemann, Ashot Margaryan, Peter de Barros Damgaard, Morten E Allentoft, Lasse Vinner, Anders J Hansen, Andrzej Weber, Vladimir I Bazaliiskii, Martyna Molak, Jette Arneborg,[...]. Proc Natl Acad Sci U S A 2018
28
7

Ancient hepatitis B viruses from the Bronze Age to the Medieval period.
Barbara Mühlemann, Terry C Jones, Peter de Barros Damgaard, Morten E Allentoft, Irina Shevnina, Andrey Logvin, Emma Usmanova, Irina P Panyushkina, Bazartseren Boldgiv, Tsevel Bazartseren,[...]. Nature 2018
85
7

Measles virus and rinderpest virus divergence dated to the sixth century BCE.
Ariane Düx, Sebastian Lequime, Livia Victoria Patrono, Bram Vrancken, Sengül Boral, Jan F Gogarten, Antonia Hilbig, David Horst, Kevin Merkel, Baptiste Prepoint,[...]. Science 2020
19
10

Initial genetic characterization of the 1918 "Spanish" influenza virus.
J K Taubenberger, A H Reid, A E Krafft, K E Bijwaard, T G Fanning. Science 1997
406
7

ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data.
Jaime Huerta-Cepas, François Serra, Peer Bork. Mol Biol Evol 2016
647
7

17th Century Variola Virus Reveals the Recent History of Smallpox.
Ana T Duggan, Maria F Perdomo, Dario Piombino-Mascali, Stephanie Marciniak, Debi Poinar, Matthew V Emery, Jan P Buchmann, Sebastian Duchêne, Rimantas Jankauskas, Margaret Humphreys,[...]. Curr Biol 2016
80
7

ModelFinder: fast model selection for accurate phylogenetic estimates.
Subha Kalyaanamoorthy, Bui Quang Minh, Thomas K F Wong, Arndt von Haeseler, Lars S Jermiin. Nat Methods 2017
7

UFBoot2: Improving the Ultrafast Bootstrap Approximation.
Diep Thi Hoang, Olga Chernomor, Arndt von Haeseler, Bui Quang Minh, Le Sy Vinh. Mol Biol Evol 2018
7


Long-term data storage in DNA.
J P Cox. Trends Biotechnol 2001
38
7


Next-generation digital information storage in DNA.
George M Church, Yuan Gao, Sriram Kosuri. Science 2012
248
7

Random access in large-scale DNA data storage.
Lee Organick, Siena Dumas Ang, Yuan-Jyue Chen, Randolph Lopez, Sergey Yekhanin, Konstantin Makarychev, Miklos Z Racz, Govinda Kamath, Parikshit Gopalan, Bichlien Nguyen,[...]. Nat Biotechnol 2018
91
7

Robust chemical preservation of digital information on DNA in silica with error-correcting codes.
Robert N Grass, Reinhard Heckel, Michela Puddu, Daniela Paunescu, Wendelin J Stark. Angew Chem Int Ed Engl 2015
111
7


Massive haplotypes underlie ecotypic differentiation in sunflowers.
Marco Todesco, Gregory L Owens, Natalia Bercovich, Jean-Sébastien Légaré, Shaghayegh Soudi, Dylan O Burge, Kaichi Huang, Katherine L Ostevik, Emily B M Drummond, Ivana Imerovski,[...]. Nature 2020
54
7

Eco-Evolutionary Genomics of Chromosomal Inversions.
Maren Wellenreuther, Louis Bernatchez. Trends Ecol Evol 2018
139
7

Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
7

Ancient proteins resolve the evolutionary history of Darwin's South American ungulates.
Frido Welker, Matthew J Collins, Jessica A Thomas, Marc Wadsley, Selina Brace, Enrico Cappellini, Samuel T Turvey, Marcelo Reguero, Javier N Gelfo, Alejandro Kramarz,[...]. Nature 2015
94
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.