A citation-based method for searching scientific literature

Maria F Palafox, Heta S Desai, Valerie A Arboleda, Keriann M Backus. Mol Syst Biol 2021
Times Cited: 7







List of co-cited articles
3 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Generalizing RNA velocity to transient cell states through dynamical modeling.
Volker Bergen, Marius Lange, Stefan Peidli, F Alexander Wolf, Fabian J Theis. Nat Biotechnol 2020
202
28

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
28

Functional proteomic identification of DNA replication proteins by induced proteolysis in vivo.
Masato Kanemaki, Alberto Sanchez-Diaz, Agnieszka Gambus, Karim Labib. Nature 2003
196
14

Systematic genetics and single-cell imaging reveal widespread morphological pleiotropy and cell-to-cell variability.
Mojca Mattiazzi Usaj, Nil Sahin, Helena Friesen, Carles Pons, Matej Usaj, Myra Paz D Masinas, Ermira Shuteriqi, Aleksei Shkurin, Patrick Aloy, Quaid Morris,[...]. Mol Syst Biol 2020
10
14

Quantification of the yeast transcriptome by single-molecule sequencing.
Doron Lipson, Tal Raz, Alix Kieu, Daniel R Jones, Eldar Giladi, Edward Thayer, John F Thompson, Stan Letovsky, Patrice Milos, Marie Causey. Nat Biotechnol 2009
127
14



Not just the wall: the other ways to turn the yeast CWI pathway on.
Elena Jiménez-Gutiérrez, Estíbaliz Alegría-Carrasco, Ángela Sellers-Moya, María Molina, Humberto Martín. Int Microbiol 2020
13
14

A consensus of core protein complex compositions for Saccharomyces cerevisiae.
Joris J Benschop, Nathalie Brabers, Dik van Leenen, Linda V Bakker, Hanneke W M van Deutekom, Nynke L van Berkum, Eva Apweiler, Philip Lijnzaad, Frank C P Holstege, Patrick Kemmeren. Mol Cell 2010
60
14


The AAA protein Msp1 mediates clearance of excess tail-anchored proteins from the peroxisomal membrane.
Nicholas R Weir, Roarke A Kamber, James S Martenson, Vladimir Denic. Elife 2017
41
14


Living materials with programmable functionalities grown from engineered microbial co-cultures.
Charlie Gilbert, Tzu-Chieh Tang, Wolfgang Ott, Brandon A Dorr, William M Shaw, George L Sun, Timothy K Lu, Tom Ellis. Nat Mater 2021
17
14

Identification and dynamic quantification of regulatory elements using total RNA.
Sascha H Duttke, Max W Chang, Sven Heinz, Christopher Benner. Genome Res 2019
21
14

A new experimental platform facilitates assessment of the transcriptional and chromatin landscapes of aging yeast.
David G Hendrickson, Ilya Soifer, Bernd J Wranik, Griffin Kim, Michael Robles, Patrick A Gibney, R Scott McIsaac. Elife 2018
16
14

Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments.
Christopher A Jackson, Dayanne M Castro, Giuseppe-Antonio Saldi, Richard Bonneau, David Gresham. Elife 2020
36
14

Vacuolar protein Tag1 and Atg1-Atg13 regulate autophagy termination during persistent starvation in S. cerevisiae.
Shintaro Kira, Masafumi Noguchi, Yasuhiro Araki, Yu Oikawa, Tamotsu Yoshimori, Aiko Miyahara, Takeshi Noda. J Cell Sci 2021
2
50

A High-Throughput Mutational Scan of an Intrinsically Disordered Acidic Transcriptional Activation Domain.
Max V Staller, Alex S Holehouse, Devjanee Swain-Lenz, Rahul K Das, Rohit V Pappu, Barak A Cohen. Cell Syst 2018
46
14

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
14

Identification of dosage-sensitive genes in Saccharomyces cerevisiae using the genetic tug-of-war method.
Koji Makanae, Reiko Kintaka, Takashi Makino, Hiroaki Kitano, Hisao Moriya. Genome Res 2013
70
14

Yeast: an experimental organism for 21st Century biology.
David Botstein, Gerald R Fink. Genetics 2011
268
14

Repression by the Arabidopsis TOPLESS corepressor requires association with the core mediator complex.
Alexander R Leydon, Wei Wang, Hardik P Gala, Sabrina Gilmour, Samuel Juarez-Solis, Mollye L Zahler, Joseph E Zemke, Ning Zheng, Jennifer L Nemhauser. Elife 2021
5
20

Synthetic biology and microbioreactor platforms for programmable production of biologics at the point-of-care.
Pablo Perez-Pinera, Ningren Han, Sara Cleto, Jicong Cao, Oliver Purcell, Kartik A Shah, Kevin Lee, Rajeev Ram, Timothy K Lu. Nat Commun 2016
39
14

Complex signal processing in synthetic gene circuits using cooperative regulatory assemblies.
Caleb J Bashor, Nikit Patel, Sandeep Choubey, Ali Beyzavi, Jané Kondev, James J Collins, Ahmad S Khalil. Science 2019
43
14


A dynamic interplay of nucleosome and Msn2 binding regulates kinetics of gene activation and repression following stress.
Nils Elfving, Răzvan V Chereji, Vasudha Bharatula, Stefan Björklund, Alexandre V Morozov, James R Broach. Nucleic Acids Res 2014
32
14


Functional profiling of the Saccharomyces cerevisiae genome.
Guri Giaever, Angela M Chu, Li Ni, Carla Connelly, Linda Riles, Steeve Véronneau, Sally Dow, Ankuta Lucau-Danila, Keith Anderson, Bruno André,[...]. Nature 2002
14

Exploration of essential gene functions via titratable promoter alleles.
Sanie Mnaimneh, Armaity P Davierwala, Jennifer Haynes, Jason Moffat, Wen-Tao Peng, Wen Zhang, Xueqi Yang, Jeff Pootoolal, Gordon Chua, Andres Lopez,[...]. Cell 2004
418
14

Robust Synthetic Circuits for Two-Dimensional Control of Gene Expression in Yeast.
Andrés Aranda-Díaz, Kieran Mace, Ignacio Zuleta, Patrick Harrigan, Hana El-Samad. ACS Synth Biol 2017
31
14

Promoter Activity Buffering Reduces the Fitness Cost of Misregulation.
Miquel Àngel Schikora-Tamarit, Guillem Lopez-Grado I Salinas, Carolina Gonzalez-Navasa, Irene Calderón, Xavi Marcos-Fa, Miquel Sas, Lucas B Carey. Cell Rep 2018
4
25

Quantitative phenotyping via deep barcode sequencing.
Andrew M Smith, Lawrence E Heisler, Joseph Mellor, Fiona Kaper, Michael J Thompson, Mark Chee, Frederick P Roth, Guri Giaever, Corey Nislow. Genome Res 2009
200
14

Structure of a new DNA-binding domain which regulates pathogenesis in a wide variety of fungi.
Matthew B Lohse, Oren S Rosenberg, Jeffery S Cox, Robert M Stroud, Janet S Finer-Moore, Alexander D Johnson. Proc Natl Acad Sci U S A 2014
12
14

Auxin-Inducible Depletion of the Essentialome Suggests Inhibition of TORC1 by Auxins and Inhibition of Vrg4 by SDZ 90-215, a Natural Antifungal Cyclopeptide.
Nathan A Snyder, Adam Kim, Louis Kester, Andrew N Gale, Christian Studer, Dominic Hoepfner, Silvio Roggo, Stephen B Helliwell, Kyle W Cunningham. G3 (Bethesda) 2019
5
20

Identifying transcription factor functions and targets by phenotypic activation.
Gordon Chua, Quaid D Morris, Richelle Sopko, Mark D Robinson, Owen Ryan, Esther T Chan, Brendan J Frey, Brenda J Andrews, Charles Boone, Timothy R Hughes. Proc Natl Acad Sci U S A 2006
127
14

Higher-order oligomerization of Spc110p drives γ-tubulin ring complex assembly.
Andrew S Lyon, Geneviève Morin, Michelle Moritz, King Clyde B Yabut, Tamira Vojnar, Alex Zelter, Eric Muller, Trisha N Davis, David A Agard. Mol Biol Cell 2016
17
14


Whole lifespan microscopic observation of budding yeast aging through a microfluidic dissection platform.
Sung Sik Lee, Ima Avalos Vizcarra, Daphne H E W Huberts, Luke P Lee, Matthias Heinemann. Proc Natl Acad Sci U S A 2012
127
14


A synthetic gene circuit for measuring autoregulatory feedback control.
Miquel Àngel Schikora-Tamarit, Carlos Toscano-Ochoa, Júlia Domingo Espinós, Lorena Espinar, Lucas B Carey. Integr Biol (Camb) 2016
5
20

Model-driven generation of artificial yeast promoters.
Benjamin J Kotopka, Christina D Smolke. Nat Commun 2020
22
14

Mapping pathways and phenotypes by systematic gene overexpression.
Richelle Sopko, Dongqing Huang, Nicolle Preston, Gordon Chua, Balázs Papp, Kimberly Kafadar, Mike Snyder, Stephen G Oliver, Martha Cyert, Timothy R Hughes,[...]. Mol Cell 2006
460
14

A systematic library for comprehensive overexpression screens in Saccharomyces cerevisiae.
Grace Marie Jones, Jim Stalker, Sean Humphray, Anthony West, Tony Cox, Jane Rogers, Ian Dunham, Gregory Prelich. Nat Methods 2008
123
14


Synthetic biology tools for programming gene expression without nutritional perturbations in Saccharomyces cerevisiae.
R Scott McIsaac, Patrick A Gibney, Sunil S Chandran, Kirsten R Benjamin, David Botstein. Nucleic Acids Res 2014
48
14

Stress-activated MAPK signaling controls fission yeast actomyosin ring integrity by modulating formin For3 levels.
Elisa Gómez-Gil, Rebeca Martín-García, Jero Vicente-Soler, Alejandro Franco, Beatriz Vázquez-Marín, Francisco Prieto-Ruiz, Teresa Soto, Pilar Pérez, Marisa Madrid, Jose Cansado. Elife 2020
5
20

Systematic exploration of essential yeast gene function with temperature-sensitive mutants.
Zhijian Li, Franco J Vizeacoumar, Sondra Bahr, Jingjing Li, Jonas Warringer, Frederick S Vizeacoumar, Renqiang Min, Benjamin Vandersluis, Jeremy Bellay, Michael Devit,[...]. Nat Biotechnol 2011
248
14

An inducible CRISPR interference library for genetic interrogation of Saccharomyces cerevisiae biology.
Amir Momen-Roknabadi, Panos Oikonomou, Maxwell Zegans, Saeed Tavazoie. Commun Biol 2020
5
20

Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast.
Matthew J Brauer, Curtis Huttenhower, Edoardo M Airoldi, Rachel Rosenstein, John C Matese, David Gresham, Viktor M Boer, Olga G Troyanskaya, David Botstein. Mol Biol Cell 2008
366
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.