A citation-based method for searching scientific literature

Kenong Su, Tianwei Yu, Hao Wu. Brief Bioinform 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
100

Challenges in unsupervised clustering of single-cell RNA-seq data.
Vladimir Yu Kiselev, Tallulah S Andrews, Martin Hemberg. Nat Rev Genet 2019
215
100

scmap: projection of single-cell RNA-seq data across data sets.
Vladimir Yu Kiselev, Andrew Yiu, Martin Hemberg. Nat Methods 2018
179
100


Automated methods for cell type annotation on scRNA-seq data.
Giovanni Pasquini, Jesus Eduardo Rojo Arias, Patrick Schäfer, Volker Busskamp. Comput Struct Biotechnol J 2021
4
100

Double-slit photoelectron interference in strong-field ionization of the neon dimer.
Maksim Kunitski, Nicolas Eicke, Pia Huber, Jonas Köhler, Stefan Zeller, Jörg Voigtsberger, Nikolai Schlott, Kevin Henrichs, Hendrik Sann, Florian Trinter,[...]. Nat Commun 2019
100


Cell type-specific transcriptional programs in mouse prefrontal cortex during adolescence and addiction.
Aritra Bhattacherjee, Mohamed Nadhir Djekidel, Renchao Chen, Wenqiang Chen, Luis M Tuesta, Yi Zhang. Nat Commun 2019
23
100

scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data.
Jose Alquicira-Hernandez, Anuja Sathe, Hanlee P Ji, Quan Nguyen, Joseph E Powell. Genome Biol 2019
37
100

Single-Cell Transcriptome Profiling of Human Pancreatic Islets in Health and Type 2 Diabetes.
Åsa Segerstolpe, Athanasia Palasantza, Pernilla Eliasson, Eva-Marie Andersson, Anne-Christine Andréasson, Xiaoyan Sun, Simone Picelli, Alan Sabirsh, Maryam Clausen, Magnus K Bjursell,[...]. Cell Metab 2016
542
100

A Single-Cell Transcriptome Atlas of the Human Pancreas.
Mauro J Muraro, Gitanjali Dharmadhikari, Dominic Grün, Nathalie Groen, Tim Dielen, Erik Jansen, Leon van Gurp, Marten A Engelse, Francoise Carlotti, Eelco J P de Koning,[...]. Cell Syst 2016
373
100

Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain.
Arpiar Saunders, Evan Z Macosko, Alec Wysoker, Melissa Goldman, Fenna M Krienen, Heather de Rivera, Elizabeth Bien, Matthew Baum, Laura Bortolin, Shuyu Wang,[...]. Cell 2018
418
100

HINT: a database of annotated protein-protein interactions and their homologs.
Ashwini Patil, Haruki Nakamura. Biophysics (Nagoya-shi) 2005
12
100


A practical guide to single-cell RNA-sequencing for biomedical research and clinical applications.
Ashraful Haque, Jessica Engel, Sarah A Teichmann, Tapio Lönnberg. Genome Med 2017
212
100

A systematic evaluation of single-cell RNA-sequencing imputation methods.
Wenpin Hou, Zhicheng Ji, Hongkai Ji, Stephanie C Hicks. Genome Biol 2020
18
100

Evaluation of Cell Type Annotation R Packages on Single-cell RNA-seq Data.
Qianhui Huang, Yu Liu, Yuheng Du, Lana X Garmire. Genomics Proteomics Bioinformatics 2021
5
100

A benchmark of batch-effect correction methods for single-cell RNA sequencing data.
Hoa Thi Nhu Tran, Kok Siong Ang, Marion Chevrier, Xiaomeng Zhang, Nicole Yee Shin Lee, Michelle Goh, Jinmiao Chen. Genome Biol 2020
127
100


Supervised classification enables rapid annotation of cell atlases.
Hannah A Pliner, Jay Shendure, Cole Trapnell. Nat Methods 2019
88
100

Probabilistic cell-type assignment of single-cell RNA-seq for tumor microenvironment profiling.
Allen W Zhang, Ciara O'Flanagan, Elizabeth A Chavez, Jamie L P Lim, Nicholas Ceglia, Andrew McPherson, Matt Wiens, Pascale Walters, Tim Chan, Brittany Hewitson,[...]. Nat Methods 2019
65
100

Multiplexed droplet single-cell RNA-sequencing using natural genetic variation.
Hyun Min Kang, Meena Subramaniam, Sasha Targ, Michelle Nguyen, Lenka Maliskova, Elizabeth McCarthy, Eunice Wan, Simon Wong, Lauren Byrnes, Cristina M Lanata,[...]. Nat Biotechnol 2018
222
100

Sensitive high-throughput single-cell RNA-seq reveals within-clonal transcript correlations in yeast populations.
Mariona Nadal-Ribelles, Saiful Islam, Wu Wei, Pablo Latorre, Michelle Nguyen, Eulàlia de Nadal, Francesc Posas, Lars M Steinmetz. Nat Microbiol 2019
20
100

SCANPY: large-scale single-cell gene expression data analysis.
F Alexander Wolf, Philipp Angerer, Fabian J Theis. Genome Biol 2018
720
100

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
100

Single-cell RNA sequencing technologies and bioinformatics pipelines.
Byungjin Hwang, Ji Hyun Lee, Duhee Bang. Exp Mol Med 2018
375
100

SAVER: gene expression recovery for single-cell RNA sequencing.
Mo Huang, Jingshu Wang, Eduardo Torre, Hannah Dueck, Sydney Shaffer, Roberto Bonasio, John I Murray, Arjun Raj, Mingyao Li, Nancy R Zhang. Nat Methods 2018
176
100

Fast, sensitive and accurate integration of single-cell data with Harmony.
Ilya Korsunsky, Nghia Millard, Jean Fan, Kamil Slowikowski, Fan Zhang, Kevin Wei, Yuriy Baglaenko, Michael Brenner, Po-Ru Loh, Soumya Raychaudhuri. Nat Methods 2019
400
100

SC3: consensus clustering of single-cell RNA-seq data.
Vladimir Yu Kiselev, Kristina Kirschner, Michael T Schaub, Tallulah Andrews, Andrew Yiu, Tamir Chandra, Kedar N Natarajan, Wolf Reik, Mauricio Barahona, Anthony R Green,[...]. Nat Methods 2017
462
100

Cell-Type-Specific Gene Expression Profiling in Adult Mouse Brain Reveals Normal and Disease-State Signatures.
Nicolas Merienne, Cécile Meunier, Anne Schneider, Jonathan Seguin, Satish S Nair, Anne B Rocher, Stéphanie Le Gras, Céline Keime, Richard Faull, Luc Pellerin,[...]. Cell Rep 2019
26
100

Systematic comparison of single-cell and single-nucleus RNA-sequencing methods.
Jiarui Ding, Xian Adiconis, Sean K Simmons, Monika S Kowalczyk, Cynthia C Hession, Nemanja D Marjanovic, Travis K Hughes, Marc H Wadsworth, Tyler Burks, Lan T Nguyen,[...]. Nat Biotechnol 2020
123
100

Comprehensive analyses of tumor immunity: implications for cancer immunotherapy.
Bo Li, Eric Severson, Jean-Christophe Pignon, Haoquan Zhao, Taiwen Li, Jesse Novak, Peng Jiang, Hui Shen, Jon C Aster, Scott Rodig,[...]. Genome Biol 2016
669
100

RNA Sequencing of Single Human Islet Cells Reveals Type 2 Diabetes Genes.
Yurong Xin, Jinrang Kim, Haruka Okamoto, Min Ni, Yi Wei, Christina Adler, Andrew J Murphy, George D Yancopoulos, Calvin Lin, Jesper Gromada. Cell Metab 2016
221
100

A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation.
Zizhen Yao, Cindy T J van Velthoven, Thuc Nghi Nguyen, Jeff Goldy, Adriana E Sedeno-Cortes, Fahimeh Baftizadeh, Darren Bertagnolli, Tamara Casper, Megan Chiang, Kirsten Crichton,[...]. Cell 2021
23
100

In situ click chemistry generation of cyclooxygenase-2 inhibitors.
Atul Bhardwaj, Jatinder Kaur, Melinda Wuest, Frank Wuest. Nat Commun 2017
100

Massively parallel digital transcriptional profiling of single cells.
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
100

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors.
Laleh Haghverdi, Aaron T L Lun, Michael D Morgan, John C Marioni. Nat Biotechnol 2018
474
100

MARS: discovering novel cell types across heterogeneous single-cell experiments.
Maria Brbić, Marinka Zitnik, Sheng Wang, Angela O Pisco, Russ B Altman, Spyros Darmanis, Jure Leskovec. Nat Methods 2020
14
100

Iterative transfer learning with neural network for clustering and cell type classification in single-cell RNA-seq analysis.
Jian Hu, Xiangjie Li, Gang Hu, Yafei Lyu, Katalin Susztak, Mingyao Li. Nat Mach Intell 2020
7
100


CHETAH: a selective, hierarchical cell type identification method for single-cell RNA sequencing.
Jurrian K de Kanter, Philip Lijnzaad, Tito Candelli, Thanasis Margaritis, Frank C P Holstege. Nucleic Acids Res 2019
41
100

The Human Cell Atlas.
Aviv Regev, Sarah A Teichmann, Eric S Lander, Ido Amit, Christophe Benoist, Ewan Birney, Bernd Bodenmiller, Peter Campbell, Piero Carninci, Menna Clatworthy,[...]. Elife 2017
668
100

A comparison of automatic cell identification methods for single-cell RNA sequencing data.
Tamim Abdelaal, Lieke Michielsen, Davy Cats, Dylan Hoogduin, Hailiang Mei, Marcel J T Reinders, Ahmed Mahfouz. Genome Biol 2019
90
100

Discovery of rare cells from voluminous single cell expression data.
Aashi Jindal, Prashant Gupta, Jayadeva, Debarka Sengupta. Nat Commun 2018
25
100

Recovering Gene Interactions from Single-Cell Data Using Data Diffusion.
David van Dijk, Roshan Sharma, Juozas Nainys, Kristina Yim, Pooja Kathail, Ambrose J Carr, Cassandra Burdziak, Kevin R Moon, Christine L Chaffer, Diwakar Pattabiraman,[...]. Cell 2018
352
100

Deep generative modeling for single-cell transcriptomics.
Romain Lopez, Jeffrey Regier, Michael B Cole, Michael I Jordan, Nir Yosef. Nat Methods 2018
227
100



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.