A citation-based method for searching scientific literature

Otília Menyhárt, Balázs Győrffy. Comput Struct Biotechnol J 2021
Times Cited: 28







List of co-cited articles
103 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Multi-omics approaches to disease.
Yehudit Hasin, Marcus Seldin, Aldons Lusis. Genome Biol 2017
653
28

Onco-Multi-OMICS Approach: A New Frontier in Cancer Research.
Sajib Chakraborty, Md Ismail Hosen, Musaddeque Ahmed, Hossain Uddin Shekhar. Biomed Res Int 2018
107
17

The Cancer Genome Atlas Pan-Cancer analysis project.
John N Weinstein, Eric A Collisson, Gordon B Mills, Kenna R Mills Shaw, Brad A Ozenberger, Kyle Ellrott, Ilya Shmulevich, Chris Sander, Joshua M Stuart. Nat Genet 2013
17

Integrated Omics: Tools, Advances, and Future Approaches.
Biswapriya B Misra, Carl D Langefeld, Michael Olivier, Laura A Cox. J Mol Endocrinol 2018
123
17

Integrated Multi-Omics Analyses in Oncology: A Review of Machine Learning Methods and Tools.
Giovanna Nicora, Francesca Vitali, Arianna Dagliati, Nophar Geifman, Riccardo Bellazzi. Front Oncol 2020
51
17

Computational Oncology in the Multi-Omics Era: State of the Art.
Guillermo de Anda-Jáuregui, Enrique Hernández-Lemus. Front Oncol 2020
30
17

Multi-omics Data Integration, Interpretation, and Its Application.
Indhupriya Subramanian, Srikant Verma, Shiva Kumar, Abhay Jere, Krishanpal Anamika. Bioinform Biol Insights 2020
193
14

Pattern discovery and cancer gene identification in integrated cancer genomic data.
Qianxing Mo, Sijian Wang, Venkatraman E Seshan, Adam B Olshen, Nikolaus Schultz, Chris Sander, R Scott Powers, Marc Ladanyi, Ronglai Shen. Proc Natl Acad Sci U S A 2013
214
14

Machine Learning and Integrative Analysis of Biomedical Big Data.
Bilal Mirza, Wei Wang, Jie Wang, Howard Choi, Neo Christopher Chung, Peipei Ping. Genes (Basel) 2019
86
14


Integration strategies of multi-omics data for machine learning analysis.
Milan Picard, Marie-Pier Scott-Boyer, Antoine Bodein, Olivier Périn, Arnaud Droit. Comput Struct Biotechnol J 2021
17
23

Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community.
Farhana R Pinu, David J Beale, Amy M Paten, Konstantinos Kouremenos, Sanjay Swarup, Horst J Schirra, David Wishart. Metabolites 2019
195
10


Deep Learning-Based Multi-Omics Integration Robustly Predicts Survival in Liver Cancer.
Kumardeep Chaudhary, Olivier B Poirion, Liangqun Lu, Lana X Garmire. Clin Cancer Res 2018
314
10

A fully Bayesian latent variable model for integrative clustering analysis of multi-type omics data.
Qianxing Mo, Ronglai Shen, Cui Guo, Marina Vannucci, Keith S Chan, Susan G Hilsenbeck. Biostatistics 2018
68
10

iBAG: integrative Bayesian analysis of high-dimensional multiplatform genomics data.
Wenting Wang, Veerabhadran Baladandayuthapani, Jeffrey S Morris, Bradley M Broom, Ganiraju Manyam, Kim-Anh Do. Bioinformatics 2013
86
10

Methods of integrating data to uncover genotype-phenotype interactions.
Marylyn D Ritchie, Emily R Holzinger, Ruowang Li, Sarah A Pendergrass, Dokyoon Kim. Nat Rev Genet 2015
447
10

MOLI: multi-omics late integration with deep neural networks for drug response prediction.
Hossein Sharifi-Noghabi, Olga Zolotareva, Colin C Collins, Martin Ester. Bioinformatics 2019
74
10

More Is Better: Recent Progress in Multi-Omics Data Integration Methods.
Sijia Huang, Kumardeep Chaudhary, Lana X Garmire. Front Genet 2017
297
10

Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources.
Tara Eicher, Garrett Kinnebrew, Andrew Patt, Kyle Spencer, Kevin Ying, Qin Ma, Raghu Machiraju, And Ewy A Mathé. Metabolites 2020
30
10

Methods for the integration of multi-omics data: mathematical aspects.
Matteo Bersanelli, Ettore Mosca, Daniel Remondini, Enrico Giampieri, Claudia Sala, Gastone Castellani, Luciano Milanesi. BMC Bioinformatics 2016
179
10

The Emerging Hallmarks of Cancer Metabolism.
Natalya N Pavlova, Craig B Thompson. Cell Metab 2016
10

Global Cancer Statistics 2020: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries.
Hyuna Sung, Jacques Ferlay, Rebecca L Siegel, Mathieu Laversanne, Isabelle Soerjomataram, Ahmedin Jemal, Freddie Bray. CA Cancer J Clin 2021
10

A comparative study of multi-omics integration tools for cancer driver gene identification and tumour subtyping.
Anita Sathyanarayanan, Rohit Gupta, Erik W Thompson, Dale R Nyholt, Denis C Bauer, Shivashankar H Nagaraj. Brief Bioinform 2020
23
13

Proteomics. Tissue-based map of the human proteome.
Mathias Uhlén, Linn Fagerberg, Björn M Hallström, Cecilia Lindskog, Per Oksvold, Adil Mardinoglu, Åsa Sivertsson, Caroline Kampf, Evelina Sjöstedt, Anna Asplund,[...]. Science 2015
10


Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours.
Xiaotu Ma, Yu Liu, Yanling Liu, Ludmil B Alexandrov, Michael N Edmonson, Charles Gawad, Xin Zhou, Yongjin Li, Michael C Rusch, John Easton,[...]. Nature 2018
376
10

Biomarkers for the early diagnosis of hepatocellular carcinoma.
Nobuhiro Tsuchiya, Yu Sawada, Itaru Endo, Keigo Saito, Yasushi Uemura, Tetsuya Nakatsura. World J Gastroenterol 2015
230
7

Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
Freddie Bray, Jacques Ferlay, Isabelle Soerjomataram, Rebecca L Siegel, Lindsey A Torre, Ahmedin Jemal. CA Cancer J Clin 2018
7

Multi-omics Integration Analysis Robustly Predicts High-Grade Patient Survival and Identifies CPT1B Effect on Fatty Acid Metabolism in Bladder Cancer.
Venkatrao Vantaku, Jianrong Dong, Chandrashekar R Ambati, Dimuthu Perera, Sri Ramya Donepudi, Chandra Sekhar Amara, Vasanta Putluri, Shiva Shankar Ravi, Matthew J Robertson, Danthasinghe Waduge Badrajee Piyarathna,[...]. Clin Cancer Res 2019
51
7

Biomarker Discovery in Human Prostate Cancer: an Update in Metabolomics Studies.
Ana Rita Lima, Maria de Lourdes Bastos, Márcia Carvalho, Paula Guedes de Pinho. Transl Oncol 2016
73
7

Cancer statistics, 2020.
Rebecca L Siegel, Kimberly D Miller, Ahmedin Jemal. CA Cancer J Clin 2020
7

Bladder cancer.
Ashish M Kamat, Noah M Hahn, Jason A Efstathiou, Seth P Lerner, Per-Uno Malmström, Woonyoung Choi, Charles C Guo, Yair Lotan, Wassim Kassouf. Lancet 2016
627
7

Integrative omics for health and disease.
Konrad J Karczewski, Michael P Snyder. Nat Rev Genet 2018
324
7

LinkedOmics: analyzing multi-omics data within and across 32 cancer types.
Suhas V Vasaikar, Peter Straub, Jing Wang, Bing Zhang. Nucleic Acids Res 2018
764
7

Proteogenomic and metabolomic characterization of human glioblastoma.
Liang-Bo Wang, Alla Karpova, Marina A Gritsenko, Jennifer E Kyle, Song Cao, Yize Li, Dmitry Rykunov, Antonio Colaprico, Joseph H Rothstein, Runyu Hong,[...]. Cancer Cell 2021
75
7

Sirt2 Inhibition Enhances Metabolic Fitness and Effector Functions of Tumor-Reactive T Cells.
Imene Hamaidi, Lin Zhang, Nayoung Kim, Min-Hsuan Wang, Cristina Iclozan, Bin Fang, Min Liu, John M Koomen, Anders E Berglund, Sean J Yoder,[...]. Cell Metab 2020
20
10

Using MetaboAnalyst 4.0 for Comprehensive and Integrative Metabolomics Data Analysis.
Jasmine Chong, David S Wishart, Jianguo Xia. Curr Protoc Bioinformatics 2019
932
7

The Need for Multi-Omics Biomarker Signatures in Precision Medicine.
Michael Olivier, Reto Asmis, Gregory A Hawkins, Timothy D Howard, Laura A Cox. Int J Mol Sci 2019
114
7

The Human Cell Atlas.
Aviv Regev, Sarah A Teichmann, Eric S Lander, Ido Amit, Christophe Benoist, Ewan Birney, Bernd Bodenmiller, Peter Campbell, Piero Carninci, Menna Clatworthy,[...]. Elife 2017
846
7


Epigenetic regulation in human cancer: the potential role of epi-drug in cancer therapy.
Yuanjun Lu, Yau-Tuen Chan, Hor-Yue Tan, Sha Li, Ning Wang, Yibin Feng. Mol Cancer 2020
70
7

Safety and Antitumor Activity of Anti-PD-1 Antibody, Nivolumab, in Patients With Platinum-Resistant Ovarian Cancer.
Junzo Hamanishi, Masaki Mandai, Takafumi Ikeda, Manabu Minami, Atsushi Kawaguchi, Toshinori Murayama, Masashi Kanai, Yukiko Mori, Shigemi Matsumoto, Shunsuke Chikuma,[...]. J Clin Oncol 2015
683
7

Multi-Omics Factor Analysis-a framework for unsupervised integration of multi-omics data sets.
Ricard Argelaguet, Britta Velten, Damien Arnol, Sascha Dietrich, Thorsten Zenz, John C Marioni, Florian Buettner, Wolfgang Huber, Oliver Stegle. Mol Syst Biol 2018
253
7

Transcriptomic and metabolomic data integration.
Rachel Cavill, Danyel Jennen, Jos Kleinjans, Jacob Jan Briedé. Brief Bioinform 2016
97
7

Omics-Based Strategies in Precision Medicine: Toward a Paradigm Shift in Inborn Errors of Metabolism Investigations.
Abdellah Tebani, Carlos Afonso, Stéphane Marret, Soumeya Bekri. Int J Mol Sci 2016
79
7


PIMKL: Pathway-Induced Multiple Kernel Learning.
Matteo Manica, Joris Cadow, Roland Mathis, María Rodríguez Martínez. NPJ Syst Biol Appl 2019
11
18

Dimension reduction techniques for the integrative analysis of multi-omics data.
Chen Meng, Oana A Zeleznik, Gerhard G Thallinger, Bernhard Kuster, Amin M Gholami, Aedín C Culhane. Brief Bioinform 2016
139
7



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.