A citation-based method for searching scientific literature

Osvaldo Yañez, Manuel Isaías Osorio, Eugenio Uriarte, Carlos Areche, William Tiznado, José M Pérez-Donoso, Olimpo García-Beltrán, Fernando González-Nilo. Front Chem 2021
Times Cited: 5







List of co-cited articles
8 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Revealing noncovalent interactions.
Erin R Johnson, Shahar Keinan, Paula Mori-Sánchez, Julia Contreras-García, Aron J Cohen, Weitao Yang. J Am Chem Soc 2010
60


VMD: visual molecular dynamics.
W Humphrey, A Dalke, K Schulten. J Mol Graph 1996
40

Structure of Mpro from SARS-CoV-2 and discovery of its inhibitors.
Zhenming Jin, Xiaoyu Du, Yechun Xu, Yongqiang Deng, Meiqin Liu, Yao Zhao, Bing Zhang, Xiaofeng Li, Leike Zhang, Chao Peng,[...]. Nature 2020
40

Computational Determination of Potential Inhibitors of SARS-CoV-2 Main Protease.
Son Tung Ngo, Ngoc Quynh Anh Pham, Ly Thi Le, Duc-Hung Pham, Van V Vu. J Chem Inf Model 2020
46
40

Grid-based algorithm to search critical points, in the electron density, accelerated by graphics processing units.
Raymundo Hernández-Esparza, Sol-Milena Mejía-Chica, Andy D Zapata-Escobar, Alfredo Guevara-García, Apolinar Martínez-Melchor, Julio-M Hernández-Pérez, Rubicelia Vargas, Jorge Garza. J Comput Chem 2014
16
40

Implementation of the Molecular Electrostatic Potential over Graphics Processing Units.
J César Cruz, Raymundo Hernández-Esparza, Álvaro Vázquez-Mayagoitia, Rubicelia Vargas, Jorge Garza. J Chem Inf Model 2019
2
100


Crystal structure of SARS-CoV-2 main protease provides a basis for design of improved α-ketoamide inhibitors.
Linlin Zhang, Daizong Lin, Xinyuanyuan Sun, Ute Curth, Christian Drosten, Lucie Sauerhering, Stephan Becker, Katharina Rox, Rolf Hilgenfeld. Science 2020
20

Protein and ligand preparation: parameters, protocols, and influence on virtual screening enrichments.
G Madhavi Sastry, Matvey Adzhigirey, Tyler Day, Ramakrishna Annabhimoju, Woody Sherman. J Comput Aided Mol Des 2013
20

Food of the gods: cure for humanity? A cultural history of the medicinal and ritual use of chocolate.
T L Dillinger, P Barriga, S Escárcega, M Jimenez, D Salazar Lowe, L E Grivetti. J Nutr 2000
103
20

Neuroprotective Effect of a New 7,8-Dihydroxycoumarin-Based Fe2+/Cu2+ Chelator in Cell and Animal Models of Parkinson's Disease.
Pabla Aguirre, Olimpo García-Beltrán, Victoria Tapia, Yorka Muñoz, Bruce K Cassels, Marco T Núñez. ACS Chem Neurosci 2017
22
20

The continuing 2019-nCoV epidemic threat of novel coronaviruses to global health - The latest 2019 novel coronavirus outbreak in Wuhan, China.
David S Hui, Esam I Azhar, Tariq A Madani, Francine Ntoumi, Richard Kock, Osman Dar, Giuseppe Ippolito, Timothy D Mchugh, Ziad A Memish, Christian Drosten,[...]. Int J Infect Dis 2020
20

Modulation of reactive oxygen species production, apoptosis and cell cycle in pleural exudate cells of carrageenan-induced acute inflammation in rats by rutin.
Stephen Adeniyi Adefegha, Daniela Bitencourt Rosa Leal, Juliana Sorraila de Oliveira, Alessandra Guedes Manzoni, Joao Matheus Bremm. Food Funct 2017
7
20

Chemical and archaeological evidence for the earliest cacao beverages.
John S Henderson, Rosemary A Joyce, Gretchen R Hall, W Jeffrey Hurst, Patrick E McGovern. Proc Natl Acad Sci U S A 2007
37
20

Ligand efficiency indices for an effective mapping of chemico-biological space: the concept of an atlas-like representation.
Cele Abad-Zapatero, Ognjen Perišić, John Wass, A Patrícia Bento, John Overington, Bissan Al-Lazikani, Michael E Johnson. Drug Discov Today 2010
74
20


In silico studies evidenced the role of structurally diverse plant secondary metabolites in reducing SARS-CoV-2 pathogenesis.
Hariprasad Puttaswamy, Hittanahallikoppal Gajendramurthy Gowtham, Monu Dinesh Ojha, Ajay Yadav, Gourav Choudhir, Vasantharaja Raguraman, Bhani Kongkham, Koushalya Selvaraju, Shazia Shareef, Priyanka Gehlot,[...]. Sci Rep 2020
16
20

Fluorescent detection of (-)-epicatechin in microsamples from cacao seeds and cocoa products: Comparison with Folin-Ciocalteu method.
Israel Ramirez-Sanchez, Lisandro Maya, Guillermo Ceballos, Francisco Villarreal. J Food Compost Anal 2010
12
20

Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 1. Generalized Born.
Andreas W Götz, Mark J Williamson, Dong Xu, Duncan Poole, Scott Le Grand, Ross C Walker. J Chem Theory Comput 2012
896
20

Antiviral effect of phytochemicals from medicinal plants: Applications and drug delivery strategies.
Shimon Ben-Shabat, Ludmila Yarmolinsky, Daniel Porat, Arik Dahan. Drug Deliv Transl Res 2020
55
20

Baicalin, a metabolite of baicalein with antiviral activity against dengue virus.
Ehsan Moghaddam, Boon-Teong Teoh, Sing-Sin Sam, Rafidah Lani, Pouya Hassandarvish, Zamri Chik, Andrew Yueh, Sazaly Abubakar, Keivan Zandi. Sci Rep 2014
114
20


Inhibition of SARS-CoV 3CL protease by flavonoids.
Seri Jo, Suwon Kim, Dong Hae Shin, Mi-Sun Kim. J Enzyme Inhib Med Chem 2020
239
20

Effect of the damping function in dispersion corrected density functional theory.
Stefan Grimme, Stephan Ehrlich, Lars Goerigk. J Comput Chem 2011
20

Potential of Flavonoid-Inspired Phytomedicines against COVID-19.
Wilfred Ngwa, Rajiv Kumar, Daryl Thompson, William Lyerly, Roscoe Moore, Terry-Elinor Reid, Henry Lowe, Ngeh Toyang. Molecules 2020
50
20

Net electrophilicity.
Pratim Kumar Chattaraj, Arindam Chakraborty, Santanab Giri. J Phys Chem A 2009
47
20

Repurposing of rutin for the inhibition of norovirus replication.
Nicolas Chéron, Chenchen Yu, Abimbola O Kolawole, Eugene I Shakhnovich, Christiane E Wobus. Arch Virol 2015
11
20

Proposal of a simple and effective local reactivity descriptor through a topological analysis of an orbital-weighted fukui function.
Ricardo Pino-Rios, Osvaldo Yañez, Diego Inostroza, Lina Ruiz, Carlos Cardenas, Patricio Fuentealba, William Tiznado. J Comput Chem 2017
12
20

Isolation and characterization of two acaricidal compounds from Calpurnia aurea subsp. aurea (Fabaceae) leaf extract.
Olubukola T Adenubi, Muna Ali Abdalla, Aroke S Ahmed, Emmanuel M Njoya, Lyndy J McGaw, Jacobus N Eloff, Vinny Naidoo. Exp Appl Acarol 2018
4
25


Anti-thrombotic effect of rutin isolated from Dendropanax morbifera Leveille.
Jun-Hui Choi, Dae-Won Kim, Se-Eun Park, Hyo-Jeong Lee, Ki-Man Kim, Kyung-Je Kim, Myung-Kon Kim, Sung-Jun Kim, Seung Kim. J Biosci Bioeng 2015
37
20

Fast and flexible gpu accelerated binding free energy calculations within the amber molecular dynamics package.
Daniel J Mermelstein, Charles Lin, Gard Nelson, Rachael Kretsch, J Andrew McCammon, Ross C Walker. J Comput Chem 2018
24
20

Structural basis of SARS-CoV-2 3CLpro and anti-COVID-19 drug discovery from medicinal plants.
Muhammad Tahir Ul Qamar, Safar M Alqahtani, Mubarak A Alamri, Ling-Ling Chen. J Pharm Anal 2020
342
20

All-atom empirical potential for molecular modeling and dynamics studies of proteins.
A D MacKerell, D Bashford, M Bellott, R L Dunbrack, J D Evanseck, M J Field, S Fischer, J Gao, H Guo, S Ha,[...]. J Phys Chem B 1998
20


NCIPLOT: a program for plotting non-covalent interaction regions.
Julia Contreras-García, Erin R Johnson, Shahar Keinan, Robin Chaudret, Jean-Philip Piquemal, David N Beratan, Weitao Yang. J Chem Theory Comput 2011
961
20

An improved generalized AMBER force field (GAFF) for urea.
Gül Altinbaş Ozpinar, Wolfgang Peukert, Timothy Clark. J Mol Model 2010
34
20

Development and testing of a general amber force field.
Junmei Wang, Romain M Wolf, James W Caldwell, Peter A Kollman, David A Case. J Comput Chem 2004
20



The Pharmacological Potential of Rutin.
Aditya Ganeshpurkar, Ajay K Saluja. Saudi Pharm J 2017
247
20


Structure-based design of antiviral drug candidates targeting the SARS-CoV-2 main protease.
Wenhao Dai, Bing Zhang, Xia-Ming Jiang, Haixia Su, Jian Li, Yao Zhao, Xiong Xie, Zhenming Jin, Jingjing Peng, Fengjiang Liu,[...]. Science 2020
488
20



Ligand binding efficiency: trends, physical basis, and implications.
Charles H Reynolds, Brett A Tounge, Scott D Bembenek. J Med Chem 2008
174
20

Ligand efficiency metrics in drug discovery: the pros and cons from a practical perspective.
Maria Maddalena Cavalluzzi, Giuseppe Felice Mangiatordi, Orazio Nicolotti, Giovanni Lentini. Expert Opin Drug Discov 2017
47
20


Antiviral Efficacy of Flavonoids against Enterovirus 71 Infection in Vitro and in Newborn Mice.
Wenwen Dai, Jinpeng Bi, Fang Li, Shuai Wang, Xinyu Huang, Xiangyu Meng, Bo Sun, Deli Wang, Wei Kong, Chunlai Jiang,[...]. Viruses 2019
33
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.