A citation-based method for searching scientific literature


List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



HDV-like self-cleaving ribozymes.
Chiu-Ho T Webb, Andrej Lupták. RNA Biol 2011
60
100

Essential nucleotide sequences and secondary structure elements of the hairpin ribozyme.
A Berzal-Herranz, S Joseph, B M Chowrira, S E Butcher, J M Burke. EMBO J 1993
153
100

The RNA World as a Model System to Study the Origin of Life.
Abe Pressman, Celia Blanco, Irene A Chen. Curr Biol 2015
71
100


Novel ribozymes: discovery, catalytic mechanisms, and the quest to understand biological function.
Christina E Weinberg, Zasha Weinberg, Christian Hammann. Nucleic Acids Res 2019
23
100

Design principles for ligand-sensing, conformation-switching ribozymes.
Xi Chen, Andrew D Ellington. PLoS Comput Biol 2009
35
100

Hunting for human ribozymes.
Claire C Chen, Andrej Lupták. Nat Chem Biol 2021
1
100


Capturing hammerhead ribozyme structures in action by modulating general base catalysis.
Young-In Chi, Monika Martick, Monica Lares, Rosalind Kim, William G Scott, Sung-Hou Kim. PLoS Biol 2008
66
100

Rational engineering of the Neurospora VS ribozyme to allow substrate recognition via different kissing-loop interactions.
Julie Lacroix-Labonté, Nicolas Girard, Pierre Dagenais, Pascale Legault. Nucleic Acids Res 2016
7
100

Modulating RNA structure and catalysis: lessons from small cleaving ribozymes.
Cedric Reymond, Jean-Denis Beaudoin, Jean-Pierre Perreault. Cell Mol Life Sci 2009
21
100


Direct pK(a) measurement of the active-site cytosine in a genomic hepatitis delta virus ribozyme.
A Lupták, A R Ferré-D'Amaré, K Zhou, K W Zilm, J A Doudna. J Am Chem Soc 2001
77
100

The global structure of the VS ribozyme.
Daniel A Lafontaine, David G Norman, David M J Lilley. EMBO J 2002
71
100

Comparison of the Structures and Mechanisms of the Pistol and Hammerhead Ribozymes.
Timothy J Wilson, Yijin Liu, Nan-Sheng Li, Qing Dai, Joseph A Piccirilli, David M J Lilley. J Am Chem Soc 2019
22
100

Self-cleavage of the glmS ribozyme core is controlled by a fragile folding element.
Andrew Savinov, Steven M Block. Proc Natl Acad Sci U S A 2018
8
100

Spontaneous network formation among cooperative RNA replicators.
Nilesh Vaidya, Michael L Manapat, Irene A Chen, Ramon Xulvi-Brunet, Eric J Hayden, Niles Lehman. Nature 2012
173
100


Design of hairpin ribozyme variants with improved activity for poorly processed substrates.
Irene Drude, Anne Strahl, Daniel Galla, Oliver Müller, Sabine Müller. FEBS J 2011
11
100

SHAPE probing pictures Mg2+-dependent folding of small self-cleaving ribozymes.
Catherina Gasser, Jennifer Gebetsberger, Manuel Gebetsberger, Ronald Micura. Nucleic Acids Res 2018
7
100

Control of gene expression by a natural metabolite-responsive ribozyme.
Wade C Winkler, Ali Nahvi, Adam Roth, Jennifer A Collins, Ronald R Breaker. Nature 2004
596
100


The hammerhead ribozyme structure brought in line.
Rita Przybilski, Christian Hammann. Chembiochem 2006
14
100


Sequence specificity of the hammerhead ribozyme revisited; the NHH rule.
A R Kore, N K Vaish, U Kutzke, F Eckstein. Nucleic Acids Res 1998
58
100

Trans-acting glmS catalytic riboswitch: locked and loaded.
Rebecca A Tinsley, Jennifer R W Furchak, Nils G Walter. RNA 2007
48
100

Engineering of ribozyme-based aminoglycoside switches of gene expression by in vivo genetic selection in Saccharomyces cerevisiae.
Benedikt Klauser, Charlotte Rehm, Daniel Summerer, Jörg S Hartig. Methods Enzymol 2015
6
100

Hepatitis delta virus.
J M Taylor. Intervirology 1999
18
100

Evidence That Nucleophile Deprotonation Exceeds Bond Formation in the HDV Ribozyme Transition State.
Jun Lu, Selene C Koo, Benjamin P Weissman, Michael E Harris, Nan-Sheng Li, Joseph A Piccirilli. Biochemistry 2018
2
100



Autolytic processing of dimeric plant virus satellite RNA.
G A Prody, J T Bakos, J M Buzayan, I R Schneider, G Bruening. Science 1986
439
100


Nucleotides -1 to -4 of hepatitis delta ribozyme substrate increase the specificity of ribozyme cleavage.
P Deschênes, D A Lafontaine, S Charland, J P Perreault. Antisense Nucleic Acid Drug Dev 2000
27
100

A guanine nucleobase important for catalysis by the VS ribozyme.
Timothy J Wilson, Aileen C McLeod, David M J Lilley. EMBO J 2007
69
100

Enzyme recruitment in evolution of new function.
R A Jensen. Annu Rev Microbiol 1976
741
100


A widespread self-cleaving ribozyme class is revealed by bioinformatics.
Adam Roth, Zasha Weinberg, Andy G Y Chen, Peter B Kim, Tyler D Ames, Ronald R Breaker. Nat Chem Biol 2014
139
100


glmS Riboswitch binding to the glucosamine-6-phosphate α-anomer shifts the pKa toward neutrality.
Jared H Davis, Brian F Dunican, Scott A Strobel. Biochemistry 2011
31
100

Structural investigation of the GlmS ribozyme bound to Its catalytic cofactor.
Jesse C Cochrane, Sarah V Lipchock, Scott A Strobel. Chem Biol 2007
191
100


The descent of polymerization.
M Levy, A D Ellington. Nat Struct Biol 2001
19
100


Two Divalent Metal Ions and Conformational Changes Play Roles in the Hammerhead Ribozyme Cleavage Reaction.
Aamir Mir, Ji Chen, Kyle Robinson, Emma Lendy, Jaclyn Goodman, David Neau, Barbara L Golden. Biochemistry 2015
35
100


Helix-length compensation studies reveal the adaptability of the VS ribozyme architecture.
Julie Lacroix-Labonté, Nicolas Girard, Sébastien Lemieux, Pascale Legault. Nucleic Acids Res 2012
10
100

Deep Sequencing Analysis of Aptazyme Variants Based on a Pistol Ribozyme.
Shungo Kobori, Kei Takahashi, Yohei Yokobayashi. ACS Synth Biol 2017
22
100

Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme.
Timothy J Wilson, Nan-Sheng Li, Jun Lu, John K Frederiksen, Joseph A Piccirilli, David M J Lilley. Proc Natl Acad Sci U S A 2010
61
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.