A citation-based method for searching scientific literature


List of co-cited articles
8 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Memprot: a program to model the detergent corona around a membrane protein based on SEC-SAXS data.
Javier Pérez, Alexandros Koutsioubas. Acta Crystallogr D Biol Crystallogr 2015
35
75

Ab initio determination of the shape of membrane proteins in a nanodisc.
Simone Orioli, Carl G Henning Hansen, Lise Arleth. Acta Crystallogr D Struct Biol 2021
2
100

Merging In-Solution X-ray and Neutron Scattering Data Allows Fine Structural Analysis of Membrane-Protein Detergent Complexes.
Gaëtan Dias Mirandela, Giulia Tamburrino, Miloš T Ivanović, Felix M Strnad, Olwyn Byron, Tim Rasmussen, Paul A Hoskisson, Jochen S Hub, Ulrich Zachariae, Frank Gabel,[...]. J Phys Chem Lett 2018
8
50



Structural characterization of flexible proteins using small-angle X-ray scattering.
Pau Bernadó, Efstratios Mylonas, Maxim V Petoukhov, Martin Blackledge, Dmitri I Svergun. J Am Chem Soc 2007
813
50


Small-angle scattering gives direct structural information about a membrane protein inside a lipid environment.
Søren A R Kynde, Nicholas Skar-Gislinge, Martin Cramer Pedersen, Søren Roi Midtgaard, Jens Baek Simonsen, Ralf Schweins, Kell Mortensen, Lise Arleth. Acta Crystallogr D Biol Crystallogr 2014
39
50

PPD: A Manually Curated Database for Experimentally Verified Prokaryotic Promoters.
Wei Su, Meng-Lu Liu, Yu-He Yang, Jia-Shu Wang, Shi-Hao Li, Hao Lv, Fu-Ying Dao, Hui Yang, Hao Lin. J Mol Biol 2021
17
25

RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive.
Yana Rose, Jose M Duarte, Robert Lowe, Joan Segura, Chunxiao Bi, Charmi Bhikadiya, Li Chen, Alexander S Rose, Sebastian Bittrich, Stephen K Burley,[...]. J Mol Biol 2021
22
25

PolarProtDb: A Database of Transmembrane and Secreted Proteins showing Apical-Basal Polarity.
András Zeke, László Dobson, Levente István Szekeres, Tamás Langó, Gábor E Tusnády. J Mol Biol 2021
2
50

aScan: A Novel Method for the Study of Allele Specific Expression in Single Individuals.
Federico Zambelli, Matteo Chiara, Erika Ferrandi, Pietro Mandreoli, Marco Antonio Tangaro, Giulio Pavesi, Graziano Pesole. J Mol Biol 2021
1
100

MEDUSA: Prediction of Protein Flexibility from Sequence.
Yann Vander Meersche, Gabriel Cretin, Alexandre G de Brevern, Jean-Christophe Gelly, Tatiana Galochkina. J Mol Biol 2021
11
25

RiPPMiner-Genome: A Web Resource for Automated Prediction of Crosslinked Chemical Structures of RiPPs by Genome Mining.
Priyesh Agrawal, Sana Amir, Deepak, Drishtee Barua, Debasisa Mohanty. J Mol Biol 2021
5
25

BetAware-Deep: An Accurate Web Server for Discrimination and Topology Prediction of Prokaryotic Transmembrane β-barrel Proteins.
Giovanni Madeo, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio. J Mol Biol 2021
3
33





Moltemplate: A Tool for Coarse-Grained Modeling of Complex Biological Matter and Soft Condensed Matter Physics.
Andrew I Jewett, David Stelter, Jason Lambert, Shyam M Saladi, Otello M Roscioni, Matteo Ricci, Ludovic Autin, Martina Maritan, Saeed M Bashusqeh, Tom Keyes,[...]. J Mol Biol 2021
14
25

interferENZY: A Web-Based Tool for Enzymatic Assay Validation and Standardized Kinetic Analysis.
Maria Filipa Pinto, Antonio Baici, Pedro José Barbosa Pereira, Sandra Macedo-Ribeiro, Annalisa Pastore, Fernando Rocha, Pedro M Martins. J Mol Biol 2021
3
33

FunCoup 5: Functional Association Networks in All Domains of Life, Supporting Directed Links and Tissue-Specificity.
Emma Persson, Miguel Castresana-Aguirre, Davide Buzzao, Dimitri Guala, Erik L L Sonnhammer. J Mol Biol 2021
5
25

MPTherm-pred: Analysis and Prediction of Thermal Stability Changes upon Mutations in Transmembrane Proteins.
A Kulandaisamy, Jan Zaucha, Dmitrij Frishman, M Michael Gromiha. J Mol Biol 2021
5
25

ANuPP: A Versatile Tool to Predict Aggregation Nucleating Regions in Peptides and Proteins.
R Prabakaran, Puneet Rawat, Sandeep Kumar, M Michael Gromiha. J Mol Biol 2021
7
25

ncRNAVar: A Manually Curated Database for Identification of Noncoding RNA Variants Associated with Human Diseases.
Wenliang Zhang, Binghui Zeng, Minglei Yang, Huan Yang, Jianbo Wang, Yongjie Deng, Haiyue Zhang, Guocai Yao, Song Wu, Weizhong Li. J Mol Biol 2021
6
25

ModFlex: Towards Function Focused Protein Modeling.
Mayya Sedova, Lukasz Jaroszewski, Mallika Iyer, Zhanwen Li, Adam Godzik. J Mol Biol 2021
1
100

REP2: A Web Server to Detect Common Tandem Repeats in Protein Sequences.
Mohamed Kamel, Kristina Kastano, Pablo Mier, Miguel A Andrade-Navarro. J Mol Biol 2021
1
100


FunRich enables enrichment analysis of OMICs datasets.
Pamali Fonseka, Mohashin Pathan, Sai V Chitti, Taeyoung Kang, Suresh Mathivanan. J Mol Biol 2021
38
25

Constrained Standardization of Count Data from Massive Parallel Sequencing.
Joris Van Houtven, Bart Cuypers, Pieter Meysman, Jef Hooyberghs, Kris Laukens, Dirk Valkenborg. J Mol Biol 2021
1
100

Galaxy InteractoMIX: An Integrated Computational Platform for the Study of Protein-Protein Interaction Data.
Patricia Mirela-Bota, Joaquim Aguirre-Plans, Alberto Meseguer, Cristiano Galletti, Joan Segura, Joan Planas-Iglesias, Javi Garcia-Garcia, Emre Guney, Baldo Oliva, Narcis Fernandez-Fuentes. J Mol Biol 2021
2
50

GeneCaRNA: A Comprehensive Gene-centric Database of Human Non-coding RNAs in the GeneCards Suite.
Ruth Barshir, Simon Fishilevich, Tsippi Iny-Stein, Ofer Zelig, Yaron Mazor, Yaron Guan-Golan, Marilyn Safran, Doron Lancet. J Mol Biol 2021
6
25


geno5mC: A Database to Explore the Association between Genetic Variation (SNPs) and CpG Methylation in the Human Genome.
C Gómez-Martín, E Aparicio-Puerta, J M Medina, Guillermo Barturen, J L Oliver, M Hackenberg. J Mol Biol 2021
1
100

An automated data processing and analysis pipeline for transmembrane proteins in detergent solutions.
Dmitry S Molodenskiy, Haydyn D T Mertens, Dmitri I Svergun. Sci Rep 2020
7
25

Sub-millisecond time-resolved SAXS using a continuous-flow mixer and X-ray microbeam.
Rita Graceffa, R Paul Nobrega, Raul A Barrea, Sagar V Kathuria, Srinivas Chakravarthy, Osman Bilsel, Thomas C Irving. J Synchrotron Radiat 2013
41
25

ATSAS 3.0: expanded functionality and new tools for small-angle scattering data analysis.
Karen Manalastas-Cantos, Petr V Konarev, Nelly R Hajizadeh, Alexey G Kikhney, Maxim V Petoukhov, Dmitry S Molodenskiy, Alejandro Panjkovich, Haydyn D T Mertens, Andrey Gruzinov, Clemente Borges,[...]. J Appl Crystallogr 2021
95
25

Structural Characterization of Highly Flexible Proteins by Small-Angle Scattering.
Tiago N Cordeiro, Fátima Herranz-Trillo, Annika Urbanek, Alejandro Estaña, Juan Cortés, Nathalie Sibille, Pau Bernadó. Adv Exp Med Biol 2017
16
25

Solution X-Ray Scattering for Membrane Proteins.
Maciej Baranowski, Javier Pérez. Methods Mol Biol 2020
1
100


Advances in X-ray scattering: from solution SAXS to achievements with coherent beams.
Javier Pérez, Yoshinori Nishino. Curr Opin Struct Biol 2012
53
25

Picosecond Photobiology: Watching a Signaling Protein Function in Real Time via Time-Resolved Small- and Wide-Angle X-ray Scattering.
Hyun Sun Cho, Friedrich Schotte, Naranbaatar Dashdorj, John Kyndt, Robert Henning, Philip A Anfinrud. J Am Chem Soc 2016
21
25

Integrating NMR, SAXS, and Atomistic Simulations: Structure and Dynamics of a Two-Domain Protein.
Karl T Debiec, Matthew J Whitley, Leonardus M I Koharudin, Lillian T Chong, Angela M Gronenborn. Biophys J 2018
12
25


Structural Analysis of RNA by Small-Angle X-ray Scattering.
Anne Théobald-Dietrich, Raphaël de Wijn, Kévin Rollet, Alexandra Bluhm, Joëlle Rudinger-Thirion, Caroline Paulus, Bernard Lorber, Aurélien Thureau, Magali Frugier, Claude Sauter. Methods Mol Biol 2020
2
50

To be disordered or not to be disordered: is that still a question for proteins in the cell?
Kris Pauwels, Pierre Lebrun, Peter Tompa. Cell Mol Life Sci 2017
24
25

Protein Footprinting: Auxiliary Engine to Power the Structural Biology Revolution.
Mark R Chance, Erik R Farquhar, Sichun Yang, David T Lodowski, Janna Kiselar. J Mol Biol 2020
11
25

Oligomerization of a Glucagon-like Peptide 1 Analog: Bridging Experiment and Simulations.
Tine M Frederiksen, Pernille Sønderby, Line A Ryberg, Pernille Harris, Jens T Bukrinski, Anne M Scharff-Poulsen, Maria N Elf-Lind, Günther H Peters. Biophys J 2015
22
25

Comprehensive structural and dynamical view of an unfolded protein from the combination of single-molecule FRET, NMR, and SAXS.
Mikayel Aznauryan, Leonildo Delgado, Andrea Soranno, Daniel Nettels, Jie-Rong Huang, Alexander M Labhardt, Stephan Grzesiek, Benjamin Schuler. Proc Natl Acad Sci U S A 2016
86
25

Combining NMR and small angle X-ray and neutron scattering in the structural analysis of a ternary protein-RNA complex.
Janosch Hennig, Iren Wang, Miriam Sonntag, Frank Gabel, Michael Sattler. J Biomol NMR 2013
39
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.