A citation-based method for searching scientific literature

Travis J Fleming, Catherine S Schrankel, Himanshu Vyas, Hannah D Rosenblatt, Amro Hamdoun. J Exp Biol 2021
Times Cited: 2







List of co-cited articles
5 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genome editing. The new frontier of genome engineering with CRISPR-Cas9.
Jennifer A Doudna, Emmanuelle Charpentier. Science 2014
100

Chromosomal-Level Genome Assembly of the Painted Sea Urchin Lytechinus pictus: A Genetically Enabled Model System for Cell Biology and Embryonic Development.
Jacob F Warner, James W Lord, Samantha A Schreiter, Katherine T Nesbit, Amro Hamdoun, Deirdre C Lyons. Genome Biol Evol 2021
4
100

Establishment of homozygous knock-out sea urchins.
Shunsuke Yaguchi, Junko Yaguchi, Haruka Suzuki, Sonoko Kinjo, Masato Kiyomoto, Kazuho Ikeo, Takashi Yamamoto. Curr Biol 2020
12
100

Establishment of knockout adult sea urchins by using a CRISPR-Cas9 system.
Daming Liu, Akinori Awazu, Tetsushi Sakuma, Takashi Yamamoto, Naoaki Sakamoto. Dev Growth Differ 2019
13
100


Ectoderm cell--ECM interaction is essential for sea urchin embryo skeletogenesis.
F Zito, V Tesoro, D R McClay, E Nakano, V Matranga. Dev Biol 1998
27
50




HpBase: A genome database of a sea urchin, Hemicentrotus pulcherrimus.
Sonoko Kinjo, Masato Kiyomoto, Takashi Yamamoto, Kazuho Ikeo, Shunsuke Yaguchi. Dev Growth Differ 2018
23
50

Temnopleurus as an emerging echinoderm model.
Shunsuke Yaguchi. Methods Cell Biol 2019
4
50

Early development and neurogenesis of Temnopleurus reevesii.
Shunsuke Yaguchi, Atsuko Yamazaki, Wakana Wada, Yasutaka Tsuchiya, Toshihiko Sato, Hideo Shinagawa, Yutaro Yamada, Junko Yaguchi. Dev Growth Differ 2015
7
50

CRISPR-Cas9 editing of non-coding genomic loci as a means of controlling gene expression in the sea urchin.
Alice Pieplow, Meseret Dastaw, Tetsushi Sakuma, Naoaki Sakamoto, Takashi Yamamoto, Mamiko Yajima, Nathalie Oulhen, Gary M Wessel. Dev Biol 2021
5
50


A global view of gene expression in lithium and zinc treated sea urchin embryos: new components of gene regulatory networks.
Albert J Poustka, Alexander Kühn, Detlef Groth, Vesna Weise, Shunsuke Yaguchi, Robert D Burke, Ralf Herwig, Hans Lehrach, Georgia Panopoulou. Genome Biol 2007
67
50

5
50

Non-transgenic genome modifications in a hemimetabolous insect using zinc-finger and TAL effector nucleases.
Takahito Watanabe, Hiroshi Ochiai, Tetsushi Sakuma, Hadley W Horch, Naoya Hamaguchi, Taro Nakamura, Tetsuya Bando, Hideyo Ohuchi, Takashi Yamamoto, Sumihare Noji,[...]. Nat Commun 2012
94
50

A TALE nuclease architecture for efficient genome editing.
Jeffrey C Miller, Siyuan Tan, Guijuan Qiao, Kyle A Barlow, Jianbin Wang, Danny F Xia, Xiangdong Meng, David E Paschon, Elo Leung, Sarah J Hinkley,[...]. Nat Biotechnol 2011
50

Troponin-I is present as an essential component of muscles in echinoderm larvae.
Shunsuke Yaguchi, Junko Yaguchi, Hiroyuki Tanaka. Sci Rep 2017
6
50


Targeted mutagenesis in the sea urchin embryo using zinc-finger nucleases.
Hiroshi Ochiai, Kazumasa Fujita, Ken-Ichi Suzuki, Masatoshi Nishikawa, Tatsuo Shibata, Naoaki Sakamoto, Takashi Yamamoto. Genes Cells 2010
62
50

Tissue-specific and ubiquitous gene knockouts by TALEN electroporation provide new approaches to investigating gene function in Ciona.
Nicholas Treen, Keita Yoshida, Tetsushi Sakuma, Haruka Sasaki, Narudo Kawai, Takashi Yamamoto, Yasunori Sasakura. Development 2014
52
50

A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.
Martin Jinek, Krzysztof Chylinski, Ines Fonfara, Michael Hauer, Jennifer A Doudna, Emmanuelle Charpentier. Science 2012
50

Nodal and BMP2/4 signaling organizes the oral-aboral axis of the sea urchin embryo.
Véronique Duboc, Eric Röttinger, Lydia Besnardeau, Thierry Lepage. Dev Cell 2004
246
50

Properties, production, and applications of camelid single-domain antibody fragments.
M M Harmsen, H J De Haard. Appl Microbiol Biotechnol 2007
484
50

Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.
A Fire, S Xu, M K Montgomery, S A Kostas, S E Driver, C C Mello. Nature 1998
50

Targeting DNA double-strand breaks with TAL effector nucleases.
Michelle Christian, Tomas Cermak, Erin L Doyle, Clarice Schmidt, Feng Zhang, Aaron Hummel, Adam J Bogdanove, Daniel F Voytas. Genetics 2010
50

A missing link in the sea urchin embryo gene regulatory network: hesC and the double-negative specification of micromeres.
Roger Revilla-i-Domingo, Paola Oliveri, Eric H Davidson. Proc Natl Acad Sci U S A 2007
109
50

Sp-Smad2/3 mediates patterning of neurogenic ectoderm by nodal in the sea urchin embryo.
Shunsuke Yaguchi, Junko Yaguchi, Robert D Burke. Dev Biol 2007
40
50


The genome of the sea urchin Strongylocentrotus purpuratus.
Erica Sodergren, George M Weinstock, Eric H Davidson, R Andrew Cameron, Richard A Gibbs, Robert C Angerer, Lynne M Angerer, Maria Ina Arnone, David R Burgess, Robert D Burke,[...]. Science 2006
757
50

Offerings from an urchin.
Susan G Ernst. Dev Biol 2011
24
50



Procuring animals and culturing of eggs and embryos.
Nikki L Adams, Andreas Heyland, Linda L Rice, Kathy R Foltz. Methods Cell Biol 2019
6
50


SpKrl: a direct target of beta-catenin regulation required for endoderm differentiation in sea urchin embryos.
E W Howard, L A Newman, D W Oleksyn, R C Angerer, L M Angerer. Development 2001
73
50

Tight regulation of SpSoxB factors is required for patterning and morphogenesis in sea urchin embryos.
Alan P Kenny, David W Oleksyn, Laurel A Newman, Robert C Angerer, Lynne M Angerer. Dev Biol 2003
47
50

Human disease-associated extracellular matrix orthologs ECM3 and QBRICK regulate primary mesenchymal cell migration in sea urchin embryos.
Daiji Kiyozumi, Shunsuke Yaguchi, Junko Yaguchi, Atsuko Yamazaki, Kiyotoshi Sekiguchi. Exp Anim 2021
1
100

Transport in technicolor: mapping ATP-binding cassette transporters in sea urchin embryos.
Tufan Gökirmak, Lauren E Shipp, Joseph P Campanale, Sascha C T Nicklisch, Amro Hamdoun. Mol Reprod Dev 2014
21
50

Clustal Omega for making accurate alignments of many protein sequences.
Fabian Sievers, Desmond G Higgins. Protein Sci 2018
593
50

Functional diversification of sea urchin ABCC1 (MRP1) by alternative splicing.
Tufan Gökirmak, Joseph P Campanale, Adam M Reitzel, Lauren E Shipp, Gary W Moy, Amro Hamdoun. Am J Physiol Cell Physiol 2016
5
50

Localization and substrate selectivity of sea urchin multidrug (MDR) efflux transporters.
Tufan Gökirmak, Joseph P Campanale, Lauren E Shipp, Gary W Moy, Houchao Tao, Amro Hamdoun. J Biol Chem 2012
42
50

A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway.
Mark A Miller, Terri Schwartz, Brett E Pickett, Sherry He, Edward B Klem, Richard H Scheuermann, Maria Passarotti, Seth Kaufman, Maureen A O'Leary. Evol Bioinform Online 2015
189
50

How to turn an organism into a model organism in 10 'easy' steps.
Benjamin J Matthews, Leslie B Vosshall. J Exp Biol 2020
35
50


CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering.
Kornel Labun, Tessa G Montague, James A Gagnon, Summer B Thyme, Eivind Valen. Nucleic Acids Res 2016
466
50

ABCC5 is required for cAMP-mediated hindgut invagination in sea urchin embryos.
Lauren E Shipp, Rose Z Hill, Gary W Moy, Tufan Gökırmak, Amro Hamdoun. Development 2015
14
50

Functional analysis of the promoter of a sea urchin metallothionein gene.
P Cserjesi, P Fairley, B P Brandhorst. Biochem Cell Biol 1992
13
50



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.