A citation-based method for searching scientific literature

Xiao Du, Lili Li, Fan Liang, Sanyang Liu, Wenxin Zhang, Shuai Sun, Yuhui Sun, Fei Fan, Linying Wang, Xinming Liang, Weijin Qiu, Guangyi Fan, Ou Wang, Weifei Yang, Jiezhong Zhang, Yuhui Xiao, Yang Wang, Depeng Wang, Shoufang Qu, Fang Chen, Jie Huang. Genomics Proteomics Bioinformatics 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genomics: massively parallel sequencing.
Yu-Hui Rogers, J Craig Venter. Nature 2005
75
100

Direct determination of diploid genome sequences.
Neil I Weisenfeld, Vijay Kumar, Preyas Shah, Deanna M Church, David B Jaffe. Genome Res 2017
290
100

A diploid assembly-based benchmark for variants in the major histocompatibility complex.
Chen-Shan Chin, Justin Wagner, Qiandong Zeng, Erik Garrison, Shilpa Garg, Arkarachai Fungtammasan, Mikko Rautiainen, Sergey Aganezov, Melanie Kirsche, Samantha Zarate,[...]. Nat Commun 2020
14
100

A comparison of phasing algorithms for trios and unrelated individuals.
Jonathan Marchini, David Cutler, Nick Patterson, Matthew Stephens, Eleazar Eskin, Eran Halperin, Shin Lin, Zhaohui S Qin, Heather M Munro, Goncalo R Abecasis,[...]. Am J Hum Genet 2006
202
100

Towards a complete sequence of the human Y chromosome.
D Bachtrog, B Charlesworth. Genome Biol 2001
14
100

Phased diploid genome assembly with single-molecule real-time sequencing.
Chen-Shan Chin, Paul Peluso, Fritz J Sedlazeck, Maria Nattestad, Gregory T Concepcion, Alicia Clum, Christopher Dunn, Ronan O'Malley, Rosa Figueroa-Balderas, Abraham Morales-Cruz,[...]. Nat Methods 2016
706
100

A graph-based approach to diploid genome assembly.
Shilpa Garg, Mikko Rautiainen, Adam M Novak, Erik Garrison, Richard Durbin, Tobias Marschall. Bioinformatics 2018
21
100

Gene map of the extended human MHC.
Roger Horton, Laurens Wilming, Vikki Rand, Ruth C Lovering, Elspeth A Bruford, Varsha K Khodiyar, Michael J Lush, Sue Povey, C Conover Talbot, Mathew W Wright,[...]. Nat Rev Genet 2004
683
100


Accurate whole-genome sequencing and haplotyping from 10 to 20 human cells.
Brock A Peters, Bahram G Kermani, Andrew B Sparks, Oleg Alferov, Peter Hong, Andrei Alexeev, Yuan Jiang, Fredrik Dahl, Y Tom Tang, Juergen Haas,[...]. Nature 2012
156
100

Mapping Bias Overestimates Reference Allele Frequencies at the HLA Genes in the 1000 Genomes Project Phase I Data.
Débora Y C Brandt, Vitor R C Aguiar, Bárbara D Bitarello, Kelly Nunes, Jérôme Goudet, Diogo Meyer. G3 (Bethesda) 2015
73
100

Haplotype estimation for biobank-scale data sets.
Jared O'Connell, Kevin Sharp, Nick Shrine, Louise Wain, Ian Hall, Martin Tobin, Jean-Francois Zagury, Olivier Delaneau, Jonathan Marchini. Nat Genet 2016
83
100


Modernizing reference genome assemblies.
Deanna M Church, Valerie A Schneider, Tina Graves, Katherine Auger, Fiona Cunningham, Nathan Bouk, Hsiu-Chuan Chen, Richa Agarwala, William M McLaren, Graham R S Ritchie,[...]. PLoS Biol 2011
225
100



De novo assembly of haplotype-resolved genomes with trio binning.
Sergey Koren, Arang Rhie, Brian P Walenz, Alexander T Dilthey, Derek M Bickhart, Sarah B Kingan, Stefan Hiendleder, John L Williams, Timothy P L Smith, Adam M Phillippy. Nat Biotechnol 2018
108
100

A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree.
Michael A Eberle, Epameinondas Fritzilas, Peter Krusche, Morten Källberg, Benjamin L Moore, Mitchell A Bekritsky, Zamin Iqbal, Han-Yu Chuang, Sean J Humphray, Aaron L Halpern,[...]. Genome Res 2017
157
100

CNGBdb: China National GeneBank DataBase.
Feng Zhen Chen, Li Jin You, Fan Yang, Li Na Wang, Xue Qin Guo, Fei Gao, Cong Hua, Cong Tan, Lin Fang, Ri Qiang Shan,[...]. Yi Chuan 2020
27
100

Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle.
Wai Yee Low, Rick Tearle, Ruijie Liu, Sergey Koren, Arang Rhie, Derek M Bickhart, Benjamin D Rosen, Zev N Kronenberg, Sarah B Kingan, Elizabeth Tseng,[...]. Nat Commun 2020
29
100

Read clouds uncover variation in complex regions of the human genome.
Alex Bishara, Yuling Liu, Ziming Weng, Dorna Kashef-Haghighi, Daniel E Newburger, Robert West, Arend Sidow, Serafim Batzoglou. Genome Res 2015
35
100

Haplotyping germline and cancer genomes with high-throughput linked-read sequencing.
Grace X Y Zheng, Billy T Lau, Michael Schnall-Levin, Mirna Jarosz, John M Bell, Christopher M Hindson, Sofia Kyriazopoulou-Panagiotopoulou, Donald A Masquelier, Landon Merrill, Jessica M Terry,[...]. Nat Biotechnol 2016
316
100

GenomeScope: fast reference-free genome profiling from short reads.
Gregory W Vurture, Fritz J Sedlazeck, Maria Nattestad, Charles J Underwood, Han Fang, James Gurtowski, Michael C Schatz. Bioinformatics 2017
405
100

Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies.
Arang Rhie, Brian P Walenz, Sergey Koren, Adam M Phillippy. Genome Biol 2020
46
100

How independent are the appearances of n-mers in different genomes?
Yuriy Fofanov, Yi Luo, Charles Katili, Jim Wang, Yuri Belosludtsev, Thomas Powdrill, Chetan Belapurkar, Viacheslav Fofanov, Tong-Bin Li, Sergey Chumakov,[...]. Bioinformatics 2004
37
100


Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.
Sergey Koren, Brian P Walenz, Konstantin Berlin, Jason R Miller, Nicholas H Bergman, Adam M Phillippy. Genome Res 2017
100


Unzipping haplotypes in diploid and polyploid genomes.
Xingtan Zhang, Ruoxi Wu, Yibin Wang, Jiaxin Yu, Haibao Tang. Comput Struct Biotechnol J 2019
20
100

TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads.
Mengyang Xu, Lidong Guo, Shengqiang Gu, Ou Wang, Rui Zhang, Brock A Peters, Guangyi Fan, Xin Liu, Xun Xu, Li Deng,[...]. Gigascience 2020
20
100

Haplotype-resolved genome sequencing: experimental methods and applications.
Matthew W Snyder, Andrew Adey, Jacob O Kitzman, Jay Shendure. Nat Rev Genet 2015
97
100

The fragment assembly string graph.
Eugene W Myers. Bioinformatics 2005
167
100

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.
Ruibang Luo, Binghang Liu, Yinlong Xie, Zhenyu Li, Weihua Huang, Jianying Yuan, Guangzhu He, Yanxiang Chen, Qi Pan, Yunjie Liu,[...]. Gigascience 2012
100

CNSA: a data repository for archiving omics data.
Xueqin Guo, Fengzhen Chen, Fei Gao, Ling Li, Ke Liu, Lijin You, Cong Hua, Fan Yang, Wanliang Liu, Chunhua Peng,[...]. Database (Oxford) 2020
38
100

QUAST: quality assessment tool for genome assemblies.
Alexey Gurevich, Vladislav Saveliev, Nikolay Vyahhi, Glenn Tesler. Bioinformatics 2013
100

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
Felipe A Simão, Robert M Waterhouse, Panagiotis Ioannidis, Evgenia V Kriventseva, Evgeny M Zdobnov. Bioinformatics 2015
100

Genome assembly from synthetic long read clouds.
Volodymyr Kuleshov, Michael P Snyder, Serafim Batzoglou. Bioinformatics 2016
18
100

Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly.
Ou Wang, Robert Chin, Xiaofang Cheng, Michelle Ka Yan Wu, Qing Mao, Jingbo Tang, Yuhui Sun, Ellis Anderson, Han K Lam, Dan Chen,[...]. Genome Res 2019
43
100

Integrative genomics viewer.
James T Robinson, Helga Thorvaldsdóttir, Wendy Winckler, Mitchell Guttman, Eric S Lander, Gad Getz, Jill P Mesirov. Nat Biotechnol 2011
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.