A citation-based method for searching scientific literature

Christen A Khella, Gaurav A Mehta, Rushabh N Mehta, Michael L Gatza. J Pers Med 2021
Times Cited: 7







List of co-cited articles
26 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


NanoReviser: An Error-Correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm.
Luotong Wang, Li Qu, Longshu Yang, Yiying Wang, Huaiqiu Zhu. Front Genet 2020
10
28

Direct RNA sequencing.
Fatih Ozsolak, Adam R Platt, Dan R Jones, Jeffrey G Reifenberger, Lauryn E Sass, Peter McInerney, John F Thompson, Jayson Bowers, Mirna Jarosz, Patrice M Milos. Nature 2009
269
28

The Versatility of SMRT Sequencing.
Matthew S Hestand, Adam Ameur. Genes (Basel) 2019
9
28

Advances and challenges in epigenomic single-cell sequencing applications.
Martin Philpott, Adam P Cribbs, Tom Brown, Tom Brown, Udo Oppermann. Curr Opin Chem Biol 2020
10
28

Genome of the Single Human Chromosome 18 as a "Gold Standard" for Its Transcriptome.
Ekaterina Ilgisonis, Nikita Vavilov, Elena Ponomarenko, Andrey Lisitsa, Ekaterina Poverennaya, Victor Zgoda, Sergey Radko, Alexander Archakov. Front Genet 2021
5
40

Machine Intelligence in Single-Cell Data Analysis: Advances and New Challenges.
Jiajia Liu, Zhiwei Fan, Weiling Zhao, Xiaobo Zhou. Front Genet 2021
11
28

4-Methylcytosine DNA modification is critical for global epigenetic regulation and virulence in the human pathogen Leptospira interrogans.
Robert A Gaultney, Antony T Vincent, Céline Lorioux, Jean-Yves Coppée, Odile Sismeiro, Hugo Varet, Rachel Legendre, Charlotte A Cockram, Frédéric J Veyrier, Mathieu Picardeau. Nucleic Acids Res 2020
9
28


Detecting and phasing minor single-nucleotide variants from long-read sequencing data.
Zhixing Feng, Jose C Clemente, Brandon Wong, Eric E Schadt. Nat Commun 2021
9
28

A Sight on Single-Cell Transcriptomics in Plants Through the Prism of Cell-Based Computational Modeling Approaches: Benefits and Challenges for Data Analysis.
Aleksandr Bobrovskikh, Alexey Doroshkov, Stefano Mazzoleni, Fabrizio Cartenì, Francesco Giannino, Ulyana Zubairova. Front Genet 2021
3
66

Harnessing Current Knowledge of DNA N6-Methyladenosine From Model Plants for Non-model Crops.
Sadaruddin Chachar, Jingrong Liu, Pingxian Zhang, Adeel Riaz, Changfei Guan, Shuyuan Liu. Front Genet 2021
9
28

Multi-omics data integration considerations and study design for biological systems and disease.
Stefan Graw, Kevin Chappell, Charity L Washam, Allen Gies, Jordan Bird, Michael S Robeson, Stephanie D Byrum. Mol Omics 2021
29
28

Single-cell multimodal omics: the power of many.
Chenxu Zhu, Sebastian Preissl, Bing Ren. Nat Methods 2020
123
28

Elucidation of Biological Networks across Complex Diseases Using Single-Cell Omics.
Yang Li, Anjun Ma, Ewy A Mathé, Lang Li, Bingqiang Liu, Qin Ma. Trends Genet 2020
10
28

Evolution of Drug-Resistant Mycobacterium tuberculosis Strains and Their Adaptation to the Human Lung Environment.
Anna Allué-Guardia, Juan I García, Jordi B Torrelles. Front Microbiol 2021
26
28

Nanopore sequencing and assembly of a human genome with ultra-long reads.
Miten Jain, Sergey Koren, Karen H Miga, Josh Quick, Arthur C Rand, Thomas A Sasani, John R Tyson, Andrew D Beggs, Alexander T Dilthey, Ian T Fiddes,[...]. Nat Biotechnol 2018
780
28


Potential of whole-genome sequencing-based pharmacogenetic profiling.
Sylvan Manuel Caspar, Timo Schneider, Patricia Stoll, Janine Meienberg, Gabor Matyas. Pharmacogenomics 2021
6
33


Opportunities and challenges in long-read sequencing data analysis.
Shanika L Amarasinghe, Shian Su, Xueyi Dong, Luke Zappia, Matthew E Ritchie, Quentin Gouil. Genome Biol 2020
334
28

Streamlining data-intensive biology with workflow systems.
Taylor Reiter, Phillip T Brooks, Luiz Irber, Shannon E K Joslin, Charles M Reid, Camille Scott, C Titus Brown, N Tessa Pierce-Ward. Gigascience 2021
14
28

TALC: Transcript-level Aware Long-read Correction.
Lucile Broseus, Aubin Thomas, Andrew J Oldfield, Dany Severac, Emeric Dubois, William Ritchie. Bioinformatics 2020
9
28


Heterotypic CAF-tumor spheroids promote early peritoneal metastatis of ovarian cancer.
Qinglei Gao, Zongyuan Yang, Sen Xu, Xiaoting Li, Xin Yang, Ping Jin, Yi Liu, Xiaoshui Zhou, Taoran Zhang, Cheng Gong,[...]. J Exp Med 2019
83
28

Cancer statistics, 2020.
Rebecca L Siegel, Kimberly D Miller, Ahmedin Jemal. CA Cancer J Clin 2020
28

A multidisciplinary approach remains the best strategy to improve and strengthen the management of ovarian cancer (Review).
Luca Falzone, Giuseppa Scandurra, Valentina Lombardo, Giuseppe Gattuso, Alessandro Lavoro, Andrea Benedetto Distefano, Giuseppe Scibilia, Paolo Scollo. Int J Oncol 2021
27
28

Circulating miR-1246 Targeting UBE2C, TNNI3, TRAIP, UCHL1 Genes and Key Pathways as a Potential Biomarker for Lung Adenocarcinoma: Integrated Biological Network Analysis.
Siyuan Huang, Yong-Kai Wei, Satyavani Kaliamurthi, Yanghui Cao, Asma Sindhoo Nangraj, Xin Sui, Dan Chu, Huan Wang, Dong-Qing Wei, Gilles H Peslherbe,[...]. J Pers Med 2020
8
14


Sestrin2 Expression Has Regulatory Properties and Prognostic Value in Lung Cancer.
Hee Sung Chae, Minchan Gil, Subbroto Kumar Saha, Hee Jeung Kwak, Hwan-Woo Park, Balachandar Vellingiri, Ssang-Goo Cho. J Pers Med 2020
8
14

Identification of Somatic Structural Variants in Solid Tumors by Optical Genome Mapping.
David Y Goldrich, Brandon LaBarge, Scott Chartrand, Lijun Zhang, Henry B Sadowski, Yang Zhang, Khoa Pham, Hannah Way, Chi-Yu Jill Lai, Andy Wing Chun Pang,[...]. J Pers Med 2021
9
14

Systems Biology and Experimental Model Systems of Cancer.
Gizem Damla Yalcin, Nurseda Danisik, Rana Can Baygin, Ahmet Acar. J Pers Med 2020
3
33

Gene Regulatory Network of ETS Domain Transcription Factors in Different Stages of Glioma.
Yigit Koray Babal, Basak Kandemir, Isil Aksan Kurnaz. J Pers Med 2021
4
25

Drug Repurposing for Triple-Negative Breast Cancer.
Marta Ávalos-Moreno, Araceli López-Tejada, Jose L Blaya-Cánovas, Francisca E Cara-Lupiañez, Adrián González-González, Jose A Lorente, Pedro Sánchez-Rovira, Sergio Granados-Principal. J Pers Med 2020
10
14

ETS-Domain Transcription Factor Elk-1 Regulates Stemness Genes in Brain Tumors and CD133+ BrainTumor-Initiating Cells.
Melis Savasan Sogut, Chitra Venugopal, Basak Kandemir, Ugur Dag, Sujeivan Mahendram, Sheila Singh, Gizem Gulfidan, Kazim Yalcin Arga, Bayram Yilmaz, Isil Aksan Kurnaz. J Pers Med 2021
2
50

Current State of "Omics" Biomarkers in Pancreatic Cancer.
Beste Turanli, Esra Yildirim, Gizem Gulfidan, Kazim Yalcin Arga, Raghu Sinha. J Pers Med 2021
8
14

Data-Driven Math Model of FLT3-ITD Acute Myeloid Leukemia Reveals Potential Therapeutic Targets.
David J Wooten, Melat Gebru, Hong-Gang Wang, Réka Albert. J Pers Med 2021
4
25

Differential Interactome Proposes Subtype-Specific Biomarkers and Potential Therapeutics in Renal Cell Carcinomas.
Aysegul Caliskan, Gizem Gulfidan, Raghu Sinha, Kazim Yalcin Arga. J Pers Med 2021
5
20

Population Genomic- and Phylogenomic-Enabled Advances to Increase Insight Into Pathogen Biology and Epidemiology.
Remco Stam, Pierre Gladieux, Boris A Vinatzer, Erica M Goss, Neha Potnis, Thierry Candresse, Marin Talbot Brewer. Phytopathology 2021
3
33

Pinpointing Cell Identity in Time and Space.
Anca F Savulescu, Caron Jacobs, Yutaka Negishi, Laurianne Davignon, Musa M Mhlanga. Front Mol Biosci 2020
9
14

Integrating single-cell and spatial transcriptomics to elucidate intercellular tissue dynamics.
Sophia K Longo, Margaret G Guo, Andrew L Ji, Paul A Khavari. Nat Rev Genet 2021
127
14

New avenues for systematically inferring cell-cell communication: through single-cell transcriptomics data.
Xin Shao, Xiaoyan Lu, Jie Liao, Huajun Chen, Xiaohui Fan. Protein Cell 2020
34
14

Methylation analysis of Klebsiella pneumoniae from Portuguese hospitals.
Anton Spadar, João Perdigão, Jody Phelan, James Charleston, Ana Modesto, Rita Elias, Paola Florez de Sessions, Martin L Hibberd, Susana Campino, Aida Duarte,[...]. Sci Rep 2021
6
16

Chromatin accessibility dynamics in a model of human forebrain development.
Alexandro E Trevino, Nasa Sinnott-Armstrong, Jimena Andersen, Se-Jin Yoon, Nina Huber, Jonathan K Pritchard, Howard Y Chang, William J Greenleaf, Sergiu P Pașca. Science 2020
82
14

Genome-wide CpG density and DNA methylation analysis method (MeDIP, RRBS, and WGBS) comparisons.
Daniel Beck, Millissia Ben Maamar, Michael K Skinner. Epigenetics 2022
11
14



RNA-sequencing from single nuclei.
Rashel V Grindberg, Joyclyn L Yee-Greenbaum, Michael J McConnell, Mark Novotny, Andy L O'Shaughnessy, Georgina M Lambert, Marcos J Araúzo-Bravo, Jun Lee, Max Fishman, Gillian E Robbins,[...]. Proc Natl Acad Sci U S A 2013
182
14

PBSIM2: a simulator for long-read sequencers with a novel generative model of quality scores.
Yukiteru Ono, Kiyoshi Asai, Michiaki Hamada. Bioinformatics 2021
16
14

Long-read cDNA sequencing identifies functional pseudogenes in the human transcriptome.
Robin-Lee Troskie, Yohaann Jafrani, Tim R Mercer, Adam D Ewing, Geoffrey J Faulkner, Seth W Cheetham. Genome Biol 2021
10
14



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.