A citation-based method for searching scientific literature

Denisa Komůrková, Alena Svobodová Kovaříková, Eva Bártová. Int J Mol Sci 2021
Times Cited: 3







List of co-cited articles
14 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



DNA damage and genome instability by G-quadruplex ligands are mediated by R loops in human cancer cells.
Alessio De Magis, Stefano G Manzo, Marco Russo, Jessica Marinello, Rita Morigi, Olivier Sordet, Giovanni Capranico. Proc Natl Acad Sci U S A 2019
120
66

Helix formation by guanylic acid.
M GELLERT, M N LIPSETT, D R DAVIES. Proc Natl Acad Sci U S A 1962
66

G-quadruplex structures mark human regulatory chromatin.
Robert Hänsel-Hertsch, Dario Beraldi, Stefanie V Lensing, Giovanni Marsico, Katherine Zyner, Aled Parry, Marco Di Antonio, Jeremy Pike, Hiroshi Kimura, Masashi Narita,[...]. Nat Genet 2016
398
66

CX-5461 is a DNA G-quadruplex stabilizer with selective lethality in BRCA1/2 deficient tumours.
Hong Xu, Marco Di Antonio, Steven McKinney, Veena Mathew, Brandon Ho, Nigel J O'Neil, Nancy Dos Santos, Jennifer Silvester, Vivien Wei, Jessica Garcia,[...]. Nat Commun 2017
246
66

Promoter G-quadruplexes and transcription factors cooperate to shape the cell type-specific transcriptome.
Sara Lago, Matteo Nadai, Filippo M Cernilogar, Maryam Kazerani, Helena Domíniguez Moreno, Gunnar Schotta, Sara N Richter. Nat Commun 2021
21
66

G-Quadruplexes: Prediction, Characterization, and Biological Application.
Chun Kit Kwok, Catherine J Merrick. Trends Biotechnol 2017
172
66

G-quadruplexes are transcription factor binding hubs in human chromatin.
Jochen Spiegel, Sergio Martínez Cuesta, Santosh Adhikari, Robert Hänsel-Hertsch, David Tannahill, Shankar Balasubramanian. Genome Biol 2021
35
66

Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?
Shankar Balasubramanian, Laurence H Hurley, Stephen Neidle. Nat Rev Drug Discov 2011
66

Small-molecule-induced DNA damage identifies alternative DNA structures in human genes.
Raphaël Rodriguez, Kyle M Miller, Josep V Forment, Charles R Bradshaw, Mehran Nikan, Sébastien Britton, Tobias Oelschlaegel, Blerta Xhemalce, Shankar Balasubramanian, Stephen P Jackson. Nat Chem Biol 2012
425
66

The Structure and Function of DNA G-Quadruplexes.
Jochen Spiegel, Santosh Adhikari, Shankar Balasubramanian. Trends Chem 2020
204
66

G-quadruplexes in promoters throughout the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2007
853
66

Single-molecule visualization of DNA G-quadruplex formation in live cells.
Marco Di Antonio, Aleks Ponjavic, Antanas Radzevičius, Rohan T Ranasinghe, Marco Catalano, Xiaoyun Zhang, Jiazhen Shen, Lisa-Maria Needham, Steven F Lee, David Klenerman,[...]. Nat Chem 2020
95
66

The regulation and functions of DNA and RNA G-quadruplexes.
Dhaval Varshney, Jochen Spiegel, Katherine Zyner, David Tannahill, Shankar Balasubramanian. Nat Rev Mol Cell Biol 2020
253
66




The regulatory G4 motif of the Kirsten ras (KRAS) gene is sensitive to guanine oxidation: implications on transcription.
Susanna Cogoi, Annalisa Ferino, Giulia Miglietta, Erik B Pedersen, Luigi E Xodo. Nucleic Acids Res 2018
59
33

Regulation of chromatin by histone modifications.
Andrew J Bannister, Tony Kouzarides. Cell Res 2011
33

Crystal structure of parallel quadruplexes from human telomeric DNA.
Gary N Parkinson, Michael P H Lee, Stephen Neidle. Nature 2002
33

Determinants of G quadruplex-induced epigenetic instability in REV1-deficient cells.
Davide Schiavone, Guillaume Guilbaud, Pierre Murat, Charikleia Papadopoulou, Peter Sarkies, Marie-Noëlle Prioleau, Shankar Balasubramanian, Julian E Sale. EMBO J 2014
84
33

Super-enhancers in transcriptional regulation and genome organization.
Xi Wang, Murray J Cairns, Jian Yan. Nucleic Acids Res 2019
47
33

Evaluating Enhancer Function and Transcription.
Andrew Field, Karen Adelman. Annu Rev Biochem 2020
39
33


Non-duplex G-Quadruplex Structures Emerge as Mediators of Epigenetic Modifications.
Ananda Kishore Mukherjee, Shalu Sharma, Shantanu Chowdhury. Trends Genet 2019
43
33

Epigenetic instability due to defective replication of structured DNA.
Peter Sarkies, Charlie Reams, Laura J Simpson, Julian E Sale. Mol Cell 2010
189
33

Liquid-Liquid Phase Separation in Crowded Environments.
Alain A M André, Evan Spruijt. Int J Mol Sci 2020
38
33


R-loop generation during transcription: Formation, processing and cellular outcomes.
Boris P Belotserkovskii, Silvia Tornaletti, Alicia D D'Souza, Philip C Hanawalt. DNA Repair (Amst) 2018
55
33

Transcription regulation by distal enhancers: who's in the loop?
Ralph Stadhouders, Anita van den Heuvel, Petros Kolovos, Ruud Jorna, Kris Leslie, Frank Grosveld, Eric Soler. Transcription 2012
31
33

A non-canonical DNA structure is a binding motif for the transcription factor SP1 in vitro.
Eun-Ang Raiber, Ramon Kranaster, Enid Lam, Mehran Nikan, Shankar Balasubramanian. Nucleic Acids Res 2012
106
33

One-electron oxidation reactions of purine and pyrimidine bases in cellular DNA.
Jean Cadet, J Richard Wagner, Vladimir Shafirovich, Nicholas E Geacintov. Int J Radiat Biol 2014
82
33

Transcriptional Addiction in Cancer.
James E Bradner, Denes Hnisz, Richard A Young. Cell 2017
492
33

YY1 interacts with guanine quadruplexes to regulate DNA looping and gene expression.
Lin Li, Preston Williams, Wendan Ren, Michelle Y Wang, Zi Gao, Weili Miao, Ming Huang, Jikui Song, Yinsheng Wang. Nat Chem Biol 2021
25
33

Superhelicity Constrains a Localized and R-Loop-Dependent Formation of G-Quadruplexes at the Upstream Region of Transcription.
Ke-Wei Zheng, Yi-de He, Hong-He Liu, Xin-Min Li, Yu-Hua Hao, Zheng Tan. ACS Chem Biol 2017
24
33





Evidence That G-quadruplex DNA Accumulates in the Cytoplasm and Participates in Stress Granule Assembly in Response to Oxidative Stress.
Alicia K Byrd, Boris L Zybailov, Leena Maddukuri, Jun Gao, John C Marecki, Mihir Jaiswal, Matthew R Bell, Wezley C Griffin, Megan R Reed, Shubeena Chib,[...]. J Biol Chem 2016
44
33

The structural basis for cohesin-CTCF-anchored loops.
Yan Li, Judith H I Haarhuis, Ángela Sedeño Cacciatore, Roel Oldenkamp, Marjon S van Ruiten, Laureen Willems, Hans Teunissen, Kyle W Muir, Elzo de Wit, Benjamin D Rowland,[...]. Nature 2020
99
33

Oxidative DNA damage is epigenetic by regulating gene transcription via base excision repair.
Aaron M Fleming, Yun Ding, Cynthia J Burrows. Proc Natl Acad Sci U S A 2017
179
33



G-quadruplex-R-loop interactions and the mechanism of anticancer G-quadruplex binders.
Giulia Miglietta, Marco Russo, Giovanni Capranico. Nucleic Acids Res 2020
32
33

Detection of genomic G-quadruplexes in living cells using a small artificial protein.
Ke-Wei Zheng, Jia-Yu Zhang, Yi-de He, Jia-Yuan Gong, Cui-Jiao Wen, Juan-Nan Chen, Yu-Hua Hao, Yong Zhao, Zheng Tan. Nucleic Acids Res 2020
28
33

Human NEIL3 Gene Expression Regulated by Epigenetic-Like Oxidative DNA Modification.
Aaron M Fleming, Judy Zhu, Shereen A Howpay Manage, Cynthia J Burrows. J Am Chem Soc 2019
24
33


Oxidative Modification of the Potential G-Quadruplex Sequence in the PCNA Gene Promoter Can Turn on Transcription.
Samuel C J Redstone, Aaron M Fleming, Cynthia J Burrows. Chem Res Toxicol 2019
32
33



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.