A citation-based method for searching scientific literature

Fuguo Wu, Jonathan E Bard, Julien Kann, Donald Yergeau, Darshan Sapkota, Yichen Ge, Zihua Hu, Jie Wang, Tao Liu, Xiuqian Mu. Nat Commun 2021
Times Cited: 4







List of co-cited articles
86 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Deletion of a remote enhancer near ATOH7 disrupts retinal neurogenesis, causing NCRNA disease.
Noor M Ghiasvand, Dellaney D Rudolph, Mohammad Mashayekhi, Joseph A Brzezinski, Daniel Goldman, Tom Glaser. Nat Neurosci 2011
84
100

Two transcription factors, Pou4f2 and Isl1, are sufficient to specify the retinal ganglion cell fate.
Fuguo Wu, Tadeusz J Kaczynski, Santhosh Sethuramanujam, Renzhong Li, Varsha Jain, Malcolm Slaughter, Xiuqian Mu. Proc Natl Acad Sci U S A 2015
53
100

Retinal ganglion cell genesis requires lakritz, a Zebrafish atonal Homolog.
J N Kay, K C Finger-Baier, T Roeser, W Staub, H Baier. Neuron 2001
294
100



Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification.
Brian S Clark, Genevieve L Stein-O'Brien, Fion Shiau, Gabrielle H Cannon, Emily Davis-Marcisak, Thomas Sherman, Clayton P Santiago, Thanh V Hoang, Fatemeh Rajaii, Rebecca E James-Esposito,[...]. Neuron 2019
95
75

Gene regulation logic in retinal ganglion cell development: Isl1 defines a critical branch distinct from but overlapping with Pou4f2.
Xiuqian Mu, Xueyao Fu, Phillip D Beremand, Terry L Thomas, William H Klein. Proc Natl Acad Sci U S A 2008
103
75

Requirement for math5 in the development of retinal ganglion cells.
S W Wang, B S Kim, K Ding, H Wang, D Sun, R L Johnson, W H Klein, L Gan. Genes Dev 2001
360
75


ISL1 and BRN3B co-regulate the differentiation of murine retinal ganglion cells.
Ling Pan, Min Deng, Xiaoling Xie, Lin Gan. Development 2008
127
75

MATH5 controls the acquisition of multiple retinal cell fates.
Liang Feng, Zheng-hua Xie, Qian Ding, Xiaoling Xie, Richard T Libby, Lin Gan. Mol Brain 2010
59
75

Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes.
Nicholas M Tran, Karthik Shekhar, Irene E Whitney, Anne Jacobi, Inbal Benhar, Guosong Hong, Wenjun Yan, Xian Adiconis, McKinzie E Arnold, Jung Min Lee,[...]. Neuron 2019
84
75

Single-Cell Analysis of Human Retina Identifies Evolutionarily Conserved and Species-Specific Mechanisms Controlling Development.
Yufeng Lu, Fion Shiau, Wenyang Yi, Suying Lu, Qian Wu, Joel D Pearson, Alyssa Kallman, Suijuan Zhong, Thanh Hoang, Zhentao Zuo,[...]. Dev Cell 2020
29
75

Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes.
Bruce A Rheaume, Amyeo Jereen, Mohan Bolisetty, Muhammad S Sajid, Yue Yang, Kathleen Renna, Lili Sun, Paul Robson, Ephraim F Trakhtenberg. Nat Commun 2018
137
75

Neurog2 controls the leading edge of neurogenesis in the mammalian retina.
Robert B Hufnagel, Tien T Le, Ashley L Riesenberg, Nadean L Brown. Dev Biol 2010
67
75

Transcription factors SOX4 and SOX11 function redundantly to regulate the development of mouse retinal ganglion cells.
Ying Jiang, Qian Ding, Xiaoling Xie, Richard T Libby, Veronique Lefebvre, Lin Gan. J Biol Chem 2013
70
75

Single-cell transcriptional logic of cell-fate specification and axon guidance in early-born retinal neurons.
Quentin Lo Giudice, Marion Leleu, Gioele La Manno, Pierre J Fabre. Development 2019
16
75

Math5 determines the competence state of retinal ganglion cell progenitors.
Zhiyong Yang, Kan Ding, Ling Pan, Min Deng, Lin Gan. Dev Biol 2003
197
75

The Atoh7 remote enhancer provides transcriptional robustness during retinal ganglion cell development.
Joel B Miesfeld, Noor M Ghiasvand, Brennan Marsh-Armstrong, Nicholas Marsh-Armstrong, Eric B Miller, Pengfei Zhang, Suman K Manna, Robert J Zawadzki, Nadean L Brown, Tom Glaser. Proc Natl Acad Sci U S A 2020
7
75

Math5 is required for both early retinal neuron differentiation and cell cycle progression.
Tien T Le, Emily Wroblewski, Sima Patel, Amy N Riesenberg, Nadean L Brown. Dev Biol 2006
78
75

Heterochronic misexpression of Ascl1 in the Atoh7 retinal cell lineage blocks cell cycle exit.
Robert B Hufnagel, Amy N Riesenberg, Malgorzata Quinn, Joseph A Brzezinski, Tom Glaser, Nadean L Brown. Mol Cell Neurosci 2013
12
75

Math5 is required for retinal ganglion cell and optic nerve formation.
N L Brown, S Patel, J Brzezinski, T Glaser. Development 2001
363
75


Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Retinal Organoids, and Long-Term Retinal Cultures.
Akshayalakshmi Sridhar, Akina Hoshino, Connor R Finkbeiner, Alex Chitsazan, Li Dai, Alexandra K Haugan, Kayla M Eschenbacher, Dana L Jackson, Cole Trapnell, Olivia Bermingham-McDonogh,[...]. Cell Rep 2020
40
75


Onecut1 and Onecut2 redundantly regulate early retinal cell fates during development.
Darshan Sapkota, Hemabindu Chintala, Fuguo Wu, Steven J Fliesler, Zihua Hu, Xiuqian Mu. Proc Natl Acad Sci U S A 2014
51
50

Influences on neural lineage and mode of division in the zebrafish retina in vivo.
Lucia Poggi, Marta Vitorino, Ichiro Masai, William A Harris. J Cell Biol 2005
128
50

All in the family: proneural bHLH genes and neuronal diversity.
Nicholas E Baker, Nadean L Brown. Development 2018
23
50

Reprogramming amacrine and photoreceptor progenitors into retinal ganglion cells by replacing Neurod1 with Atoh7.
Chai-An Mao, Jang-Hyeon Cho, Jing Wang, Zhiguang Gao, Ping Pan, Wen-Wei Tsai, Laura J Frishman, William H Klein. Development 2013
30
50

Rbpj direct regulation of Atoh7 transcription in the embryonic mouse retina.
Joel B Miesfeld, Myung-Soon Moon, Amy N Riesenberg, Ashley N Contreras, Rhett A Kovall, Nadean L Brown. Sci Rep 2018
7
50

A gene network downstream of transcription factor Math5 regulates retinal progenitor cell competence and ganglion cell fate.
Xiuqian Mu, Xueyao Fu, Hongxia Sun, Phillip D Beremand, Terry L Thomas, William H Klein. Dev Biol 2005
101
50

C8orf46 homolog encodes a novel protein Vexin that is required for neurogenesis in Xenopus laevis.
Kathryn B Moore, Mary A Logan, Issam Aldiri, Jacqueline M Roberts, Michael Steele, Monica L Vetter. Dev Biol 2018
8
50

Next generation sequencing identifies mutations in Atonal homolog 7 (ATOH7) in families with global eye developmental defects.
Kamron Khan, Clare V Logan, Martin McKibbin, Eamonn Sheridan, Nursel H Elçioglu, Ozlem Yenice, David A Parry, Narcis Fernandez-Fuentes, Zakia I A Abdelhamed, Ahmed Al-Maskari,[...]. Hum Mol Genet 2012
37
50


Diffusion pseudotime robustly reconstructs lineage branching.
Laleh Haghverdi, Maren Büttner, F Alexander Wolf, Florian Buettner, Fabian J Theis. Nat Methods 2016
342
50


Discrete gene sets depend on POU domain transcription factor Brn3b/Brn-3.2/POU4f2 for their expression in the mouse embryonic retina.
Xiuqian Mu, Phillip D Beremand, Sheng Zhao, Rashmi Pershad, Hongxia Sun, Ann Scarpa, Shuguang Liang, Terry L Thomas, William H Klein. Development 2004
98
50

The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis.
Issam Aldiri, Beisi Xu, Lu Wang, Xiang Chen, Daniel Hiler, Lyra Griffiths, Marc Valentine, Abbas Shirinifard, Suresh Thiagarajan, Andras Sablauer,[...]. Neuron 2017
97
50


The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.
Cole Trapnell, Davide Cacchiarelli, Jonna Grimsby, Prapti Pokharel, Shuqiang Li, Michael Morse, Niall J Lennon, Kenneth J Livak, Tarjei S Mikkelsen, John L Rinn. Nat Biotechnol 2014
50

ATOH7 mutations cause autosomal recessive persistent hyperplasia of the primary vitreous.
Lev Prasov, Tehmina Masud, Shagufta Khaliq, S Qasim Mehdi, Aiysha Abid, Edward R Oliver, Eduardo D Silva, Amy Lewanda, Michael C Brodsky, Mark Borchert,[...]. Hum Mol Genet 2012
42
50

Decomposing Cell Identity for Transfer Learning across Cellular Measurements, Platforms, Tissues, and Species.
Genevieve L Stein-O'Brien, Brian S Clark, Thomas Sherman, Cristina Zibetti, Qiwen Hu, Rachel Sealfon, Sheng Liu, Jiang Qian, Carlo Colantuoni, Seth Blackshaw,[...]. Cell Syst 2019
38
50

Math5 encodes a murine basic helix-loop-helix transcription factor expressed during early stages of retinal neurogenesis.
N L Brown, S Kanekar, M L Vetter, P K Tucker, D L Gemza, T Glaser. Development 1998
248
50




Onecut1 is essential for horizontal cell genesis and retinal integrity.
Fuguo Wu, Renzhong Li, Yumiko Umino, Tadeusz J Kaczynski, Darshan Sapkota, Shengguo Li, Mengqing Xiang, Steven J Fliesler, David M Sherry, Maureen Gannon,[...]. J Neurosci 2013
42
50

Epitope-tagging Math5 and Pou4f2: new tools to study retinal ganglion cell development in the mouse.
Xueyao Fu, Takae Kiyama, Renzhong Li, Mark Russell, William H Klein, Xiuqian Mu. Dev Dyn 2009
21
50




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.