A citation-based method for searching scientific literature

Arjun Bhattacharya, Yun Li, Michael I Love. PLoS Genet 2021
Times Cited: 4







List of co-cited articles
15 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A gene-based association method for mapping traits using reference transcriptome data.
Eric R Gamazon, Heather E Wheeler, Kaanan P Shah, Sahar V Mozaffari, Keston Aquino-Michaels, Robert J Carroll, Anne E Eyler, Joshua C Denny, Dan L Nicolae, Nancy J Cox,[...]. Nat Genet 2015
631
100

Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics.
Alvaro N Barbeira, Scott P Dickinson, Rodrigo Bonazzola, Jiamao Zheng, Heather E Wheeler, Jason M Torres, Eric S Torstenson, Kaanan P Shah, Tzintzuni Garcia, Todd L Edwards,[...]. Nat Commun 2018
271
100

Integrative approaches for large-scale transcriptome-wide association studies.
Alexander Gusev, Arthur Ko, Huwenbo Shi, Gaurav Bhatia, Wonil Chung, Brenda W J H Penninx, Rick Jansen, Eco J C de Geus, Dorret I Boomsma, Fred A Wright,[...]. Nat Genet 2016
598
75

Opportunities and challenges for transcriptome-wide association studies.
Michael Wainberg, Nasa Sinnott-Armstrong, Nicholas Mancuso, Alvaro N Barbeira, David A Knowles, David Golan, Raili Ermel, Arno Ruusalepp, Thomas Quertermous, Ke Hao,[...]. Nat Genet 2019
193
75

Integrative analysis of omics summary data reveals putative mechanisms underlying complex traits.
Yang Wu, Jian Zeng, Futao Zhang, Zhihong Zhu, Ting Qi, Zhili Zheng, Luke R Lloyd-Jones, Riccardo E Marioni, Nicholas G Martin, Grant W Montgomery,[...]. Nat Commun 2018
95
50

A transcriptome-wide association study of high-grade serous epithelial ovarian cancer identifies new susceptibility genes and splice variants.
Alexander Gusev, Kate Lawrenson, Xianzhi Lin, Paulo C Lyra, Siddhartha Kar, Kevin C Vavra, Felipe Segato, Marcos A S Fonseca, Janet M Lee, Tanya Pejovic,[...]. Nat Genet 2019
24
50

A transcriptome-wide association study of 229,000 women identifies new candidate susceptibility genes for breast cancer.
Lang Wu, Wei Shi, Jirong Long, Xingyi Guo, Kyriaki Michailidou, Jonathan Beesley, Manjeet K Bolla, Xiao-Ou Shu, Yingchang Lu, Qiuyin Cai,[...]. Nat Genet 2018
81
50

10 Years of GWAS Discovery: Biology, Function, and Translation.
Peter M Visscher, Naomi R Wray, Qian Zhang, Pamela Sklar, Mark I McCarthy, Matthew A Brown, Jian Yang. Am J Hum Genet 2017
50

The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019.
Annalisa Buniello, Jacqueline A L MacArthur, Maria Cerezo, Laura W Harris, James Hayhurst, Cinzia Malangone, Aoife McMahon, Joannella Morales, Edward Mountjoy, Elliot Sollis,[...]. Nucleic Acids Res 2019
984
50

Probabilistic fine-mapping of transcriptome-wide association studies.
Nicholas Mancuso, Malika K Freund, Ruth Johnson, Huwenbo Shi, Gleb Kichaev, Alexander Gusev, Bogdan Pasaniuc. Nat Genet 2019
71
50

TIGAR: An Improved Bayesian Tool for Transcriptomic Data Imputation Enhances Gene Mapping of Complex Traits.
Sini Nagpal, Xiaoran Meng, Michael P Epstein, Lam C Tsoi, Matthew Patrick, Greg Gibson, Philip L De Jager, David A Bennett, Aliza P Wingo, Thomas S Wingo,[...]. Am J Hum Genet 2019
24
50

Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.
Iris E Jansen, Jeanne E Savage, Kyoko Watanabe, Julien Bryois, Dylan M Williams, Stacy Steinberg, Julia Sealock, Ida K Karlsson, Sara Hägg, Lavinia Athanasiu,[...]. Nat Genet 2019
566
50

Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals.
Alexis Battle, Sara Mostafavi, Xiaowei Zhu, James B Potash, Myrna M Weissman, Courtney McCormick, Christian D Haudenschild, Kenneth B Beckman, Jianxin Shi, Rui Mei,[...]. Genome Res 2014
300
50

Partitioning heritability by functional annotation using genome-wide association summary statistics.
Hilary K Finucane, Brendan Bulik-Sullivan, Alexander Gusev, Gosia Trynka, Yakir Reshef, Po-Ru Loh, Verneri Anttila, Han Xu, Chongzhi Zang, Kyle Farh,[...]. Nat Genet 2015
771
50

Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.
J C Lambert, C A Ibrahim-Verbaas, D Harold, A C Naj, R Sims, C Bellenguez, A L DeStafano, J C Bis, G W Beecham, B Grenier-Boley,[...]. Nat Genet 2013
50

Tissue specific regulation of transcription in endometrium and association with disease.
Sally Mortlock, Raden I Kendarsari, Jenny N Fung, Greg Gibson, Fei Yang, Restuadi Restuadi, Jane E Girling, Sarah J Holdsworth-Carson, Wan Tinn Teh, Samuel W Lukowski,[...]. Hum Reprod 2020
16
25

Genome-wide association and transcriptome studies identify target genes and risk loci for breast cancer.
Manuel A Ferreira, Eric R Gamazon, Fares Al-Ejeh, Kristiina Aittomäki, Irene L Andrulis, Hoda Anton-Culver, Adalgeir Arason, Volker Arndt, Kristan J Aronson, Banu K Arun,[...]. Nat Commun 2019
31
25

Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.
Kyriaki Michailidou, Jonathan Beesley, Sara Lindstrom, Sander Canisius, Joe Dennis, Michael J Lush, Mel J Maranian, Manjeet K Bolla, Qin Wang, Mitul Shah,[...]. Nat Genet 2015
343
25

Sirtuin 1 is required for antagonist-induced transcriptional repression of androgen-responsive genes by the androgen receptor.
Yan Dai, Duyen Ngo, Lora W Forman, David C Qin, Johanna Jacob, Douglas V Faller. Mol Endocrinol 2007
74
25


Cancer incidence and mortality worldwide: sources, methods and major patterns in GLOBOCAN 2012.
Jacques Ferlay, Isabelle Soerjomataram, Rajesh Dikshit, Sultan Eser, Colin Mathers, Marise Rebelo, Donald Maxwell Parkin, David Forman, Freddie Bray. Int J Cancer 2015
25

Toward a Shared Vision for Cancer Genomic Data.
Robert L Grossman, Allison P Heath, Vincent Ferretti, Harold E Varmus, Douglas R Lowy, Warren A Kibbe, Louis M Staudt. N Engl J Med 2016
534
25

Conditional eQTL analysis reveals allelic heterogeneity of gene expression.
Rick Jansen, Jouke-Jan Hottenga, Michel G Nivard, Abdel Abdellaoui, Bram Laport, Eco J de Geus, Fred A Wright, Brenda W J H Penninx, Dorret I Boomsma. Hum Mol Genet 2017
70
25

FOXA1 positively regulates gene expression by changing gene methylation status in human breast cancer MCF-7 cells.
Lu Zheng, Bo Qian, Duo Tian, Tong Tang, Shengyun Wan, Lei Wang, Lixin Zhu, Xiaoping Geng. Int J Clin Exp Pathol 2015
10
25

Genome-wide association studies of cancer: current insights and future perspectives.
Amit Sud, Ben Kinnersley, Richard S Houlston. Nat Rev Cancer 2017
139
25

Reproductive factors and colorectal cancer.
C La Vecchia, S Franceschi. Cancer Causes Control 1991
47
25

CancerMine: a literature-mined resource for drivers, oncogenes and tumor suppressors in cancer.
Jake Lever, Eric Y Zhao, Jasleen Grewal, Martin R Jones, Steven J M Jones. Nat Methods 2019
44
25

Tumor suppressor miRNA-204-5p promotes apoptosis by targeting BCL2 in prostate cancer cells.
Yi-Chia Lin, Ji-Fan Lin, Te-Fu Tsai, Kuang-Yu Chou, Hung-En Chen, Thomas I-Sheng Hwang. Asian J Surg 2017
53
25

Arg/Abl2 promotes invasion and attenuates proliferation of breast cancer in vivo.
H Gil-Henn, A Patsialou, Y Wang, M S Warren, J S Condeelis, A J Koleske. Oncogene 2013
83
25

Upregulation of microRNA-3129 suppresses epithelial ovarian cancer through CD44.
Xiaochun Sun, Manhua Cui, Lingling Tong, Aichen Zhang, Kun Wang. Cancer Gene Ther 2018
11
25

Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.
Fredrick R Schumacher, Ali Amin Al Olama, Sonja I Berndt, Sara Benlloch, Mahbubl Ahmed, Edward J Saunders, Tokhir Dadaev, Daniel Leongamornlert, Ezequiel Anokian, Clara Cieza-Borrella,[...]. Nat Genet 2018
263
25

Identification of nine new susceptibility loci for endometrial cancer.
Tracy A O'Mara, Dylan M Glubb, Frederic Amant, Daniela Annibali, Katie Ashton, John Attia, Paul L Auer, Matthias W Beckmann, Amanda Black, Manjeet K Bolla,[...]. Nat Commun 2018
48
25

Association analyses identify 31 new risk loci for colorectal cancer susceptibility.
Philip J Law, Maria Timofeeva, Ceres Fernandez-Rozadilla, Peter Broderick, James Studd, Juan Fernandez-Tajes, Susan Farrington, Victoria Svinti, Claire Palles, Giulia Orlando,[...]. Nat Commun 2019
70
25

Large-scale transcriptome-wide association study identifies new prostate cancer risk regions.
Nicholas Mancuso, Simon Gayther, Alexander Gusev, Wei Zheng, Kathryn L Penney, Zsofia Kote-Jarai, Rosalind Eeles, Matthew Freedman, Christopher Haiman, Bogdan Pasaniuc. Nat Commun 2018
51
25

Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.
Wei Zhou, Jonas B Nielsen, Lars G Fritsche, Rounak Dey, Maiken E Gabrielsen, Brooke N Wolford, Jonathon LeFaive, Peter VandeHaar, Sarah A Gagliano, Aliya Gifford,[...]. Nat Genet 2018
237
25

Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.
Christelle Adolphe, Angli Xue, Atefeh Taherian Fard, Laura A Genovesi, Jian Yang, Brandon J Wainwright. Genome Med 2021
1
100

Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets.
Zhihong Zhu, Futao Zhang, Han Hu, Andrew Bakshi, Matthew R Robinson, Joseph E Powell, Grant W Montgomery, Michael E Goddard, Naomi R Wray, Peter M Visscher,[...]. Nat Genet 2016
689
25

The role of MicroRNAs in human cancer.
Yong Peng, Carlo M Croce. Signal Transduct Target Ther 2016
824
25

Serum exosomal miR-4772-3p is a predictor of tumor recurrence in stage II and III colon cancer.
Chang Liu, Cathy Eng, Jianjun Shen, Yue Lu, Yoko Takata, Amir Mehdizadeh, George J Chang, Miguel A Rodriguez-Bigas, Yanan Li, Ping Chang,[...]. Oncotarget 2016
58
25


Transcriptional positive cofactor 4 promotes breast cancer proliferation and metastasis through c-Myc mediated Warburg effect.
Peng Luo, Chi Zhang, Fengying Liao, Long Chen, Zhenyu Liu, Lei Long, Zhongyong Jiang, Yawei Wang, Ziwen Wang, Zujuan Liu,[...]. Cell Commun Signal 2019
18
25


Ratio of miR-196s to HOXC8 messenger RNA correlates with breast cancer cell migration and metastasis.
Yong Li, Maoxiang Zhang, Huijun Chen, Zheng Dong, Vadivel Ganapathy, Muthusamy Thangaraju, Shuang Huang. Cancer Res 2010
119
25

Runx2 transcriptome of prostate cancer cells: insights into invasiveness and bone metastasis.
Sanjeev K Baniwal, Omar Khalid, Yankel Gabet, Ruchir R Shah, Daniel J Purcell, Deepak Mav, Alice E Kohn-Gabet, Yunfan Shi, Gerhard A Coetzee, Baruch Frenkel. Mol Cancer 2010
115
25

Heterogenous Nuclear Ribonucleoprotein H1 Promotes Colorectal Cancer Progression through the Stabilization of mRNA of Sphingosine-1-Phosphate Lyase 1.
Keitaro Takahashi, Mikihiro Fujiya, Hiroaki Konishi, Yuki Murakami, Takuya Iwama, Takahiro Sasaki, Takehito Kunogi, Aki Sakatani, Katsuyoshi Ando, Nobuhiro Ueno,[...]. Int J Mol Sci 2020
7
25

Breast and prostate cancer: more similar than different.
Gail P Risbridger, Ian D Davis, Stephen N Birrell, Wayne D Tilley. Nat Rev Cancer 2010
149
25

Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.
Catherine M Phelan, Karoline B Kuchenbaecker, Jonathan P Tyrer, Siddhartha P Kar, Kate Lawrenson, Stacey J Winham, Joe Dennis, Ailith Pirie, Marjorie J Riggan, Ganna Chornokur,[...]. Nat Genet 2017
142
25

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
25

Fusobacterium nucleatum Increases Proliferation of Colorectal Cancer Cells and Tumor Development in Mice by Activating Toll-Like Receptor 4 Signaling to Nuclear Factor-κB, and Up-regulating Expression of MicroRNA-21.
Yongzhi Yang, Wenhao Weng, Junjie Peng, Leiming Hong, Lei Yang, Yuji Toiyama, Renyuan Gao, Minfeng Liu, Mingming Yin, Cheng Pan,[...]. Gastroenterology 2017
285
25

Predicting gene targets from integrative analyses of summary data from GWAS and eQTL studies for 28 human complex traits.
Jennifer M Whitehead Pavlides, Zhihong Zhu, Jacob Gratten, Allan F McRae, Naomi R Wray, Jian Yang. Genome Med 2016
54
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.