A citation-based method for searching scientific literature

Ryan J Lu, Emily K Wang, Bérénice A Benayoun. Brief Funct Genomics 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Combinatorial Single-Cell Analyses of Granulocyte-Monocyte Progenitor Heterogeneity Reveals an Early Uni-potent Neutrophil Progenitor.
Immanuel Kwok, Etienne Becht, Yu Xia, Melissa Ng, Ye Chean Teh, Leonard Tan, Maximilien Evrard, Jackson L Y Li, Hoa T N Tran, Yingrou Tan,[...]. Immunity 2020
28
100

High neutrophil numbers in human carotid atherosclerotic plaques are associated with characteristics of rupture-prone lesions.
Mihaela G Ionita, Pleunie van den Borne, Louise M Catanzariti, Frans L Moll, Jean-Paul P M de Vries, Gerard Pasterkamp, Aryan Vink, Dominique P V de Kleijn. Arterioscler Thromb Vasc Biol 2010
154
100

Regulation of p53 target gene expression by peptidylarginine deiminase 4.
Pingxin Li, Hongjie Yao, Zhiqiang Zhang, Ming Li, Yuan Luo, Paul R Thompson, David S Gilmour, Yanming Wang. Mol Cell Biol 2008
138
100

DNA Modification Readers and Writers and Their Interplay.
Cathia Rausch, Florian D Hastert, M Cristina Cardoso. J Mol Biol 2019
20
100

Performance Evaluation and Online Realization of Data-driven Normalization Methods Used in LC/MS based Untargeted Metabolomics Analysis.
Bo Li, Jing Tang, Qingxia Yang, Xuejiao Cui, Shuang Li, Sijie Chen, Quanxing Cao, Weiwei Xue, Na Chen, Feng Zhu. Sci Rep 2016
79
100

Cross-Platform Comparison of Untargeted and Targeted Lipidomics Approaches on Aging Mouse Plasma.
Kévin Contrepois, Salah Mahmoudi, Baljit K Ubhi, Katharina Papsdorf, Daniel Hornburg, Anne Brunet, Michael Snyder. Sci Rep 2018
30
100

Regulation of FOXO Factors in Mammalian Cells.
Abigail K Brown, Ashley E Webb. Curr Top Dev Biol 2018
42
100

Neutrophil elastase promotes myofibroblast differentiation in lung fibrosis.
Alyssa D Gregory, Corrine R Kliment, Heather E Metz, Kyoung-Hee Kim, Julia Kargl, Brittani A Agostini, Lauren T Crum, Elizabeth A Oczypok, Tim A Oury, A McGarry Houghton. J Leukoc Biol 2015
77
100

Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses.
Bérénice A Benayoun, Elizabeth A Pollina, Param Priya Singh, Salah Mahmoudi, Itamar Harel, Kerriann M Casey, Ben W Dulken, Anshul Kundaje, Anne Brunet. Genome Res 2019
70
100

Progression of chronic liver inflammation and fibrosis driven by activation of c-JUN signaling in Sirt6 mutant mice.
Cuiying Xiao, Rui-Hong Wang, Tyler J Lahusen, Ogyi Park, Adeline Bertola, Takashi Maruyama, Della Reynolds, Qiang Chen, Xiaoling Xu, Howard A Young,[...]. J Biol Chem 2012
107
100

Changes in Neutrophil Metabolism upon Activation and Aging.
Barbara Christine Richer, Natallia Salei, Tamás Laskay, Karsten Seeger. Inflammation 2018
10
100

Neutrophil ageing is regulated by the microbiome.
Dachuan Zhang, Grace Chen, Deepa Manwani, Arthur Mortha, Chunliang Xu, Jeremiah J Faith, Robert D Burk, Yuya Kunisaki, Jung-Eun Jang, Christoph Scheiermann,[...]. Nature 2015
340
100

Changes in activation states of murine polymorphonuclear leukocytes (PMN) during inflammation: a comparison of bone marrow and peritoneal exudate PMN.
Takuya Itou, L Vincent Collins, Fredrik B Thorén, Claes Dahlgren, Anna Karlsson. Clin Vaccine Immunol 2006
48
100


Citrullination regulates pluripotency and histone H1 binding to chromatin.
Maria A Christophorou, Gonçalo Castelo-Branco, Richard P Halley-Stott, Clara Slade Oliveira, Remco Loos, Aliaksandra Radzisheuskaya, Kerri A Mowen, Paul Bertone, José C R Silva, Magdalena Zernicka-Goetz,[...]. Nature 2014
213
100

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
100

SIRT6 links histone H3 lysine 9 deacetylation to NF-kappaB-dependent gene expression and organismal life span.
Tiara L A Kawahara, Eriko Michishita, Adam S Adler, Mara Damian, Elisabeth Berber, Meihong Lin, Ron A McCord, Kristine C L Ongaigui, Lisa D Boxer, Howard Y Chang,[...]. Cell 2009
692
100

LION/web: a web-based ontology enrichment tool for lipidomic data analysis.
Martijn R Molenaar, Aike Jeucken, Tsjerk A Wassenaar, Chris H A van de Lest, Jos F Brouwers, J Bernd Helms. Gigascience 2019
29
100


ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing.
Xingqi Chen, Ying Shen, Will Draper, Jason D Buenrostro, Ulrike Litzenburger, Seung Woo Cho, Ansuman T Satpathy, Ava C Carter, Rajarshi P Ghosh, Alexandra East-Seletsky,[...]. Nat Methods 2016
80
100

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
100


Requirement of NPHP5 in the hierarchical assembly of basal feet associated with basal bodies of primary cilia.
Delowar Hossain, Marine Barbelanne, William Y Tsang. Cell Mol Life Sci 2020
2
100

Neutrophils and emerging targets for treatment in chronic obstructive pulmonary disease.
Mariska Meijer, Ger T Rijkers, Frans J van Overveld. Expert Rev Clin Immunol 2013
45
100

Genome-wide expression profiling identifies an impairment of negative feedback signals in the Crohn's disease-associated NOD2 variant L1007fsinsC.
Susanne Billmann-Born, Andreas Till, Alexander Arlt, Simone Lipinski, Christian Sina, Anna Latiano, Vito Annese, Robert Häsler, Martin Kerick, Thomas Manke,[...]. J Immunol 2011
17
100

Injections of Lipopolysaccharide into Mice to Mimic Entrance of Microbial-derived Products After Intestinal Barrier Breach.
Katarina Raduolovic, Rachel Mak'Anyengo, Berna Kaya, Anna Steinert, Jan Hendrik Niess. J Vis Exp 2018
7
100

InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation.
Karin Breuer, Amir K Foroushani, Matthew R Laird, Carol Chen, Anastasia Sribnaia, Raymond Lo, Geoffrey L Winsor, Robert E W Hancock, Fiona S L Brinkman, David J Lynn. Nucleic Acids Res 2013
551
100

Sex differences in immune responses.
Sabra L Klein, Katie L Flanagan. Nat Rev Immunol 2016
100

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
100

B-myb is an essential regulator of hematopoietic stem cell and myeloid progenitor cell development.
Stacey J Baker, Avi Ma'ayan, Yen K Lieu, Premila John, M V Ramana Reddy, Edward Y Chen, Qiaonan Duan, Hans-Willem Snoeck, E Premkumar Reddy. Proc Natl Acad Sci U S A 2014
23
100


Multi-level remodeling of transcriptional landscapes in aging and longevity.
Rochelle W Lai, Ryan Lu, Prakroothi S Danthi, Juan I Bravo, Alexandre Goumba, Nirmal Kumar Sampathkumar, Bérénice A Benayoun. BMB Rep 2019
13
100


Functional connection between deimination and deacetylation of histones.
Hélène Denis, Rachel Deplus, Pascale Putmans, Michiyuki Yamada, Raphaël Métivier, François Fuks. Mol Cell Biol 2009
59
100

Autophagy Primes Neutrophils for Neutrophil Extracellular Trap Formation during Sepsis.
So Young Park, Sanjeeb Shrestha, Young-Jin Youn, Jun-Kyu Kim, Shin-Yeong Kim, Hyun Jung Kim, So-Hee Park, Won-Gyun Ahn, Shin Kim, Myung Goo Lee,[...]. Am J Respir Crit Care Med 2017
62
100

The forkhead transcription factor FOXM1 controls cell cycle-dependent gene expression through an atypical chromatin binding mechanism.
Xi Chen, Gerd A Müller, Marianne Quaas, Martin Fischer, Namshik Han, Benjamin Stutchbury, Andrew D Sharrocks, Kurt Engeland. Mol Cell Biol 2013
123
100

Loss of FoxOs in muscle reveals sex-based differences in insulin sensitivity but mitigates diet-induced obesity.
Christie M Penniman, Pablo A Suarez Beltran, Gourav Bhardwaj, Taylor L Junck, Jayashree Jena, Kennedy Poro, Michael F Hirshman, Laurie J Goodyear, Brian T O'Neill. Mol Metab 2019
7
100

The B-MYB transcriptional network guides cell cycle progression and fate decisions to sustain self-renewal and the identity of pluripotent stem cells.
Ming Zhan, Daniel R Riordon, Bin Yan, Yelena S Tarasova, Sarah Bruweleit, Kirill V Tarasov, Ronald A Li, Robert P Wersto, Kenneth R Boheler. PLoS One 2012
26
100

Non-canonical mTORC2 Signaling Regulates Brown Adipocyte Lipid Catabolism through SIRT6-FoxO1.
Su Myung Jung, Chien-Min Hung, Samuel R Hildebrand, Joan Sanchez-Gurmaches, Barbara Martinez-Pastor, Jivani M Gengatharan, Martina Wallace, Dimpi Mukhopadhyay, Camila Martinez Calejman, Amelia K Luciano,[...]. Mol Cell 2019
21
100


Mice lacking neutrophil elastase reveal impaired host defense against gram negative bacterial sepsis.
A Belaaouaj, R McCarthy, M Baumann, Z Gao, T J Ley, S N Abraham, S D Shapiro. Nat Med 1998
484
100

Neutrophil elastase and myeloperoxidase regulate the formation of neutrophil extracellular traps.
Venizelos Papayannopoulos, Kathleen D Metzler, Abdul Hakkim, Arturo Zychlinsky. J Cell Biol 2010
937
100

Induction and Quantification of NETosis.
Carmelo Carmona-Rivera, Mariana J Kaplan. Curr Protoc Immunol 2016
23
100

Impaired neutrophil extracellular trap formation: a novel defect in the innate immune system of aged individuals.
Jon Hazeldine, Phillipa Harris, Iain L Chapple, Melissa Grant, Hannah Greenwood, Amy Livesey, Elizabeth Sapey, Janet M Lord. Aging Cell 2014
124
100

Autophagy-Dependent Generation of Free Fatty Acids Is Critical for Normal Neutrophil Differentiation.
Thomas Riffelmacher, Alexander Clarke, Felix C Richter, Amanda Stranks, Sumeet Pandey, Sara Danielli, Philip Hublitz, Zhanru Yu, Errin Johnson, Tobias Schwerd,[...]. Immunity 2017
107
100



Aging exacerbates neutrophil pathogenicity in ischemic stroke.
Meaghan A Roy-O'Reilly, Hilda Ahnstedt, Monica S Spychala, Yashasvee Munshi, Jaroslaw Aronowski, Lauren H Sansing, Louise D McCullough. Aging (Albany NY) 2020
8
100

Mechanisms of degranulation in neutrophils.
Paige Lacy. Allergy Asthma Clin Immunol 2006
171
100

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.
Jason D Buenrostro, Paul G Giresi, Lisa C Zaba, Howard Y Chang, William J Greenleaf. Nat Methods 2013
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.